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Revisión del 11:35 27 mar 2012
Surveys (wiki under construction)
Alexandre Manhães Savio
Studies
- Information Engineer (October 2006) - University of the Basque Country
- Currently: PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.
Work Experience
- February/2008 - December/2009 - Research assistant at the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country
- MR image processing and application of classification algorithms for the detection of brain neuronal disorders.
- April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.
- Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB
- July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.
- C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration
Courses
- July 7th-11th, 2008 - AERFAI Summer School - PRMA'08 - Pattern Recognition for Motion Analysis in the Computer Vision Center of the Universidad Autónoma de Barcelona.
- July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - Two-Week Multi-Modality Short Course
- May 31st - June 4th, 2010 - FSL Course organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg & Würzburg Universities in Heidelberg, Germany.
Internships
- January 24th - July 31st, 2011 - FMRIB, University of Oxford, UK with Dr. Saad Jbabdi. On ball&stick diffusion models for multishell HARDI and model selection.
Publications
Post-processed datasets from the work done in the group.
2012
- - S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems, Magnetic Resonance in Medicine - doi: 10.1002/mrm.24204
2011
- - A. Savio, A. Bourisly, M. Graña; On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques, ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. 13-16 October 2011. Montabaur, Germany
- - M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation., Neuroscience letters, Volume 502, Issue 3, 20 September 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055
- - Alexandre Savio, Manuel Graña, Jorge Villanúa, Deformation based features for Alzheimer's disease detection with linear SVM.; Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)
2010
- - Alexandre Savio, Maria T García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI, Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269
- - Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; Neural classifiers for schizophrenia diagnostic support on diffusion imaging data; Neural Network World 20(7):935-949 [1].. ISI JCR 2009: 0.475
- Data:
- Post-processed subjects: part 1, part 2 and part 3
- Correlation values: part 1, part 2 and part 3
- Feature masks
- Features vectors
- Data extracted from the NAMIC: Brain Multimodality database.
- - Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers
- - Darya Chyzhyk, Maite Termenón, Alexandre Savio; A Comparison of VBM Results by SPM, ICA and LICA; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; DOI 10.1007/978-3-642-13803-4_53
2009
- - Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; On the use of Morphometry based features for Alzheimer's Disease detection on MRI; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; DOI 10.1007/978-3-642-02478-8_120
- Data:
- List of 98 OASIS females
- - Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; Results of an Adaboost approach on Alzheimer's Disease detection on MRI; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; DOI 10.1007/978-3-642-02267-8_13
- draft
- Data:
- List of 98 OASIS females
- - Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; DOI: 10.1007/978-3-642-04394-9_78
- draft
- Data:
- List of 98 OASIS females
2008
- - Maite García-Sebastián, A. M. Savio, M. Graña; Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm; | link; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0
- - Alexandre Manhaes Savio; Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1
- slides_book
Projects
SAIOTEK 2009
SAIOTEK 2008
- Desarrollo de métodos y técnicas de análisis de imagen de resonancia magnética cerebral en el ámbito del software libre para estudio de enfermedades neurodegenerativas (BRAINER) [2]
- Investigadora principal: Carmen Hernandez Gomez
- Entidades: Ciencias de la Computación e Inteligencia Artificial (UPV/EHU), Fundación Vasca de Innovación e Investigación Sanitaria/B+I+O (Eusko Fundazioa), Departamento de Neurociencia (UPV/EHU)
- Año Solicitud: 2.008 Fecha entrada: 19/02/09
Programa "Red guipuzcoana de Ciencia, Tecnología e Innovación" Gipuzkoako Foru Aldundia/Diputación Foral de Guipúzcoa
- Detección preclínica del Alzheimer mediante Neuroimagen [3]
- Referencia: OF145/2007
- Investigadora principal: Maite García-Sebastián
- Organismo: Universidad del País Vasco
- Duración: 1 año
SAIOTEK 2007
- Desarrollo de técnicas de análisis de imágenes de Resonancia Magnética con aplicación en el diagnóstico preclínico de la enfermedad de Alzheimer [4], [5]
- Referencia: S-PR07UN02
- Investigadora principal: Maite García-Sebastián
- Entidades participantes: UPV/EHU-Departamento de CCIA, Osatek-Gipuzkoa.
- Duración: 2 años
- Otros proyectos del grupo [6]
Research Areas
- Pattern recognition applied to medical images
- Brain medical image processing
- Gesture recognition systems
Research Questions
- How does the multivariate tensor analysis work using all the deformation tensor information?
- Is there any SOM-based framework for diffusion data modelling?
- Any application of Lattice-Computing on Probabilistic Tractography?
Pending Tasks
- ITK, ANTS...
- OpenMP and MPI
- Multivariate Analysis
- Meditate
- DTI modeling
- Process Ann's DTI dataset
- Add MRI and ML related info pages with literature reviews on this wiki.
articulos de revistas en proceso de redacción
- TBM y Oasis
- Sampling approaches using DTI models
conferencias en el horno
Conferences
"I love deadlines. I especially like the whooshing sound they make as they go flying by." - Douglas Adams
Coming...
Current readings
Books
- Human Brain Function 2nd edition - J Ashburner, K Friston and W Penny PDF completo
- Medical Image Registration - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)
@book{mcconnell_applications_1960, title = {Applications of Tensor Analysis}, isbn = {0486603733}, publisher = {Dover Publications}, author = {A. J. {McConnell}}, month = jun, year = {1960} }
Working articles
- More information in my groupware articles Artículos Image Registration and Working Diaries
Congresos y revistas objetivo
Revistas (ordenadas por factor de impacto)
1- Journal of Magnetic Resonance Imaging
3- IEEE Transactions on Medical Imaging
4- Magnetic Resonance in Medicine
Otras revistas
Congresos
- WBIR WBIR 2010
- More conferences: [8]
Internet Bookmarks
Courses
Databases
Research Groups
- Oxford Centre for Functional MRI of the Brain - University of Oxford - JR Hospital - England
- Centre of Medical Image Computing - University College London - Gower Street - Eng. Building
- Structural Brain Mapping Group - University of Jena - Thüringen - central Germany
- Section of Biomedical Image Analysis - University of Pennsylvania
- Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental - Hospital General Universitario Gregorio Marañón
- McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI) - McGill University
- Asclepios project - INRIA Sophia-Antipolis
- ODYSSEE research project-team - INRIA Sophia-Antipolis
- Divisions of Bioimaging and MRI Technology - University and ETH Zurich
- Biomedical Imaging Group Rotterdam - Erasmus MC - University Medical Center Rotterdam
- A community portal for MIT brain research - Massachussets Institute of Technology
- Image Processing Lab de la FEI Sao Bernardo do Campo (SP) - Brasil
Utilities
Scientific Writing
- Chapter "How to Write an Introduction" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English ( Ref. )
Computer Settings
- Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL) Giclus10.04 Installation Procedure (PDF File)
Image Processing
- Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)
Pattern Recognition
- Invited speakers for SIAM Conference on Optimization (Modersitzki presentation on image registration)
Real World
- Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos. ( Página personal de Luis Ibañez en Kitware )
- Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009
Estado burocrático de la tesis
- Director
- Manuel Graña
- Trabajo de investigación aprobado.
- Beca de Formación de Personal Investigador del Gobierno Vasco para los 4 años a partir del 2010.