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Revisión del 15:06 11 oct 2010
Alexandre Manhães Savio
- Contact: alexandre.manhaes__at__ehu.es
Studies
- Engineer in Computer Science (October 2006) - University of the Basque Country
- Currently: PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country
Work Experience
- April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.
- Java, Spring Framework, Hibernate, C/C++, GTK+, Cairo graphics, DirectFB
- July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.
- C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration
Courses
- July 7th-11th, 2008 - AERFAI Summer School - PRMA'08 - Pattern Recognition for Motion Analysis in the Computer Vision Center of the Universidad Autónoma de Barcelona.
- July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - Two-Week Multi-Modality Short Course
- May 31st - June 4th, 2010 - FSL Course organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg & Würzburg Universities in Heidelberg, Germany.
Publications
2010
- Darya Chyzyk, Maite Termenón, Alexandre Savio
- A Comparison of VBM Results by SPM, ICA and LICA
- Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II
- Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435
- ISBN: 978-3-642-13802-7
- DOI 10.1007/978-3-642-13803-4_53
2009
- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa
- On the use of Morphometry based features for Alzheimer's Disease detection on MRI
- Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I)
- Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964
- ISBN 978-3-642-02477-1
- DOI 10.1007/978-3-642-02478-8_120
- Data:
- List of 98 OASIS females
- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa
- Results of an Adaboost approach on Alzheimer's Disease detection on MRI
- Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II)
- José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123
- ISBN 978-3-642-02266-1
- DOI 10.1007/978-3-642-02267-8_13
- Data:
- List of 98 OASIS females
- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa
- Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection
- Intelligent Data Engineering and Automated Learning - IDEAL 2009
- LNCS 5788, Springer Verlag 2009, pp. 641-648
- ISBN: 978-3-642-04393-2
- DOI: 10.1007/978-3-642-04394-9_78
- Data:
- List of 98 OASIS females
2008
- Maite García-Sebastián, A. M. Savio, M. Graña.
- Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm [1]
- Proceedings CEC 2008, pp.4146-4150
- ISBN 978-1-4244-1822-0
- Alexandre Manhaes Savio
- Brain Image Registration - Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08
- Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors)
- Servicio editorial de la UPV/EHU.
- ISBN 978-84-296-2316-1
Projects
SAIOTEK 2009
SAIOTEK 2008
- Desarrollo de métodos y técnicas de análisis de imagen de resonancia magnética cerebral en el ámbito del software libre para estudio de enfermedades neurodegenerativas (BRAINER) [2]
- Investigadora principal: Carmen Hernandez Gomez
- Entidades: Ciencias de la Computación e Inteligencia Artificial (UPV/EHU), Fundación Vasca de Innovación e Investigación Sanitaria/B+I+O (Eusko Fundazioa), Departamento de Neurociencia (UPV/EHU)
- Año Solicitud: 2.008 Fecha entrada: 19/02/09
Programa "Red guipuzcoana de Ciencia, Tecnología e Innovación" Gipuzkoako Foru Aldundia/Diputación Foral de Guipúzcoa
- Detección preclínica del Alzheimer mediante Neuroimagen [3]
- Referencia: OF145/2007
- Investigadora principal: Maite García-Sebastián
- Organismo: Universidad del País Vasco
- Duración: 1 año
SAIOTEK 2007
- Desarrollo de técnicas de análisis de imágenes de Resonancia Magnética con aplicación en el diagnóstico preclínico de la enfermedad de Alzheimer [4], [5]
- Referencia: S-PR07UN02
- Investigadora principal: Maite García-Sebastián
- Entidades participantes: UPV/EHU-Departamento de CCIA, Osatek-Gipuzkoa.
- Duración: 2 años
- Otros proyectos del grupo [6]
Research Areas
- Pattern recognition applied to medical images
- Brain medical image processing
- Gesture recognition systems
Research Questions
- Mutual information non linear registration procedures.
- Steps of cortical surface registration. Cortical topology reconstruction.
- Tensor-based Morphometry
- Applications of Lattice-Computing on Probabilistic Tractography?
Pending Tasks
- ITK, ANTS...
- OpenMP and MPI
- Multivariate Analysis
- Meditate
Conferences
"I love deadlines. I especially like the whooshing sound they make as they go flying by." - Douglas Adams
Coming...
Submission of full papers: March 11, 2010
Conference date: September 20-24, 2010
Beijing, China
Work diary (meetings with directors)
Current readings
Books
- Human Brain Function 2nd edition - J Ashburner, K Friston and W Penny PDF completo
- Medical Image Registration - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)
@book{mcconnell_applications_1960, title = {Applications of Tensor Analysis}, isbn = {0486603733}, publisher = {Dover Publications}, author = {A. J. {McConnell}}, month = jun, year = {1960} }
Working articles
- COMPARE: Classification of Morphological Patterns Using Adaptive Regional Elements - Yong Fan, Dinggang Shen, Ruben C. Gur, Raquel E. Gur, Christos Davatzikos - IEEE Trans. Med. Imaging 26(1): 93-105 (2007)
- Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration - Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang, Gary E. Christensen, Louis D. Collins, James Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey. NeuroImage (2009) DOI
- Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain - B.B. Avants, C.L. Epstein, M. Grossman and J.C. Gee. - Medical Image Analysis Volume 12, Issue 1, February 2008, Pages 26-41 - Special Issue on The Third International Workshop on Biomedical Image Registration – WBIR 2006
- A variational approach to multi-modal image matching - Hermosillo Gerardo; Chef d'Hotel Christophe; Faugeras Olivier - Variational and Level Set Methods in Computer Vision, 2001. Proceedings. IEEE Workshop on
- Point similarity measures for non-rigid registration of multi-modal data - Peter Rogelj, Stanislav Kovacic, James C. Gee, Computer Vision and Image UnderstandingVolume 92, Issue 1, , October 2003, Pages 112-140.
- More reading information in my groupware article Artículos Image Registration
Congresos y revistas objetivo
Revistas (ordenadas por factor de impacto)
1- Journal of Magnetic Resonance Imaging
3- IEEE Transactions of Medical Imaging
4- Magnetic Resonance in Medicine
Otras revistas
Congresos
- WBIR WBIR 2010
- More conferences: [8]
Internet Bookmarks
Courses
Databases
Research Groups
- Centre of Medical Image Computing - University College London - Gower Street - Eng. Building
- Structural Brain Mapping Group - University of Jena - Thüringen - central Germany
- Section of Biomedical Image Analysis - University of Pennsylvania
- Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental - Hospital General Universitario Gregorio Marañón
- McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI) - McGill University
- Asclepios project - INRIA Sophia-Antipolis
- ODYSSEE research project-team - INRIA Sophia-Antipolis
- Divisions of Bioimaging and MRI Technology - University and ETH Zurich
- Biomedical Imaging Group Rotterdam - Erasmus MC - University Medical Center Rotterdam
- A community portal for MIT brain research - Massachussets Institute of Technology
- Image Processing Lab de la FEI Sao Bernardo do Campo (SP) - Brasil
Utilities
Scientific Writing
- Chapter "How to Write an Introduction" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English ( Ref. )
Computer Settings
- Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL) Giclus10.04 Installation Procedure (PDF File)
Image Processing
- Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)
Pattern Recognition
- Invited speakers for SIAM Conference on Optimization (Modersitzki presentation on image registration)
Real World
- Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos. ( Página personal de Luis Ibañez en Kitware )
- Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009
Estado burocrático de la tesis
- Director
- Manuel Graña
- Trabajo de investigación aprobado.
- Beca de Formación de Personal Investigador del Gobierno Vasco para los 4 años a partir del 2010.