Usuario:Alexsavio

Alexandre Manhães Savio

• Contact: alexandre.manhaes__at__ehu.es

Studies

• Engineer in Computer Science (October 2006) - University of the Basque Country

• Currently: PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country

Courses

• 7th-11th July, 2008 - AERFAI Summer School - PRMA'08 - Pattern Recognition for Motion Analysis in the Computer Vision Center of the Universidad Autónoma de Barcelona.

Publications

2008

   Maite García-Sebastián, A. M. Savio, M. Graña.
   Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm 
   Proceedings CEC 2008, pp.4147-4151 
   ISBN 978-1-4244-1823-7

Research Areas

• MRI medical images segmentation and registration for brain functional localization
• Gesture recognition systems

Research Questions

• Mutual information non linear registration procedures.

• Steps of cortical surface registration. Cortical topology reconstruction.

• Tensor Based Morphometry

Pending Tasks

• Preparar informe sobre VBM
• Preparar capítulo de libro sobre registro no lineal.
• Learn 3DSlicer and FSL for registration.
• Learning how to use ITK, VTKEdge and ParaView.
• Creating plugin for 3DSlicer for groupwise registration method.

Deadlines de congresos y trabajos pendientes

"I love deadlines. I especially like the whooshing sound they make as they go flying by." - Douglas Adams

• BIOSTEC 2009

Regular Paper Submission: October 17, 2008

• SPIE Medical Imaging

Due Dates for Abstract Submission: 28 July 2008. Submit Your Manuscript: 12 January 2009.

• Annual Meeting of the Organization for Human Brain Mapping

Deadline: January 14, 2009

• IWANN 2009

Submission of papers: 23rd January 2009. - Changed to 30th January. Should not exceed 8 pages in the LNCS Springer-Verlag format.

WHOOOOSH!!!

Still coming...

• IWINAC 09

Final Date for Submission: February 15, 2009

• MICCAI 2009

Submission of full papers: 08/03/2009. Papers for MICCAI 2009 must be submitted in LNCS style, prepared for double-blind review, and may be up to 8 pages, including all references, tables and figures.

• CAIP 2009

Submission of full papers: 31/03/2009 Springer

• Neuroscience 2009

Submission: (April 23 - Abstract submission opens) - (May 14 - Abstract submission deadline) Journal of Neuroscience

• NSS/MIC 2009

Submission of full papers: 11/05/2009 IEEE

• ICPR 2010

Submission of full papers: Jan 15, 2010

Proyectos

• Petición Proyecto MICINN 2008

• Fin de SAIOTEK 2007

Current readings

Books

• Human Brain Function 2nd edition - J Ashburner, K Friston and W Penny PDF completo

• Medical Image Registration - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)

• Splines - A perfect Fit for Signal and Image Processing

Working articles

• Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location - Fennema-Notestine et al. - NeuroImage 2009 - Article In Press - Uncorrected proof

• Point similarity measures for non-rigid registration of multi-modal data - Peter Rogelj, Stanislav Kovacic, James C. Gee, Computer Vision and Image UnderstandingVolume 92, Issue 1, , October 2003, Pages 112-140.

• Quantitative comparison of algorithms next term for previous terminter-subject registration of 3D volumetric brain MRI scans - Babak A. Ardekania, Stephen Guckemusa, Alvin Bachmana, Matthew J. Hoptmanb, Michelle Wojtaszeka and Jay Nierenberga

• Nonrigid registration of brain MRI using NURBS - Jianzhe Wang and Tianzi Jian

• Contour Fitting Using an Adaptive Spline Model (1995) - Daniel Rueckert, Peter Burger

• More reading information in my groupware article Artículos Image Registration

Congresos y revistas objetivo

Revistas (ordenadas por factor de impacto)

1- Journal of Magnetic Resonance Imaging

2- Medical Image Analysis

3- IEEE Transactions of Medical Imaging

4- Magnetic Resonance in Medicine

Otras revistas

• Computer Assisted Radiology and Surgery

• Insight Journal

• Midas Journal

• Biomedical Imaging and Intervention Journal

• NeuroImage

• Brain

Congresos

• MICCAI Society

• BIOSTEC

• SPIE Medical Imaging

• Computer Assisted Radiology and Surgery

• More conferences: [1]

Direcciones web de interés

• CBU Imaging Wiki

• Kitware Youtube Channel

• BioInfoBank Library

• MindBoggle - A Project for Human Brain Labeling

• Supplementary Material Document from Klein NeuroImage 2009

• eigenfactor.org - ranking and mapping scientific knowledge

Cursos

• Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare

• Cursos de formación

Databases

• OASIS

• BrainMap

• Fractional Anisotropy Database

Research Groups

• Structural Brain Mapping Group - University of Jena - Thüringen - central Germany

• Section of Biomedical Image Analysis - University of Pennsylvania

• A community portal for MIT brain research - Massachussets Institute of Technology

• Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería - ULPGC

• Image Processing Lab de la FEI Sao Bernardo do Campo (SP) - Brasil

Utilidades

Computer Settings

• Install Cisco VPN client on Ubuntu 8.04

• SPIE LaTEX manuscript templates and writing guidelines

• BibTeX Style Examples

• Impressive - The stylish way of giving PDF presentations

• Install ITK and Kitware software from sources. [2] [3] (for more information ask me)

• Install python wrapper on building ITK from sources.

• Create a 3DSlicer Plugin

• Sync Tomboy Notes

• Push references from JabRef to Lyx

• Página de instalación de FSL en Debian

• Setting up FSL to use a SunGridEngine or computing cluster

• How to install Springer LNCS Style for Lyx

Image Processing

• Nomenclatura de los planos de corte en los seres vivos

• NA-MIC Software Repository

• ImageMagick Usage Examples

• FSL VBM How to

• BRAINSFit - Rigid Registration Tool

• Statistical Parametric Mapping

• SPM Programming Intro

• SPM5-Specific code snippets by John Ashburner

• A Quaternion and Rotation Primer

• FMRIB's Diffusion Toolbox - FDT v2.0

• 3D Slicer User Documentation

• Short introduction to DTI analysis

• Automatic Registration Toolbox (ART)

• A Quaternion and Rotation Primer

• Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)

Pattern Recognition

• My scripts

• Weka How Tos

• Matrices de confusión y otros valores estadísticos

• LIBSVM - A library for Support Vector Machines

• Teach Me Data Analysis (Range scaling)

Real World

• Some useful hints to know about the PhD

• Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos. ( Página personal de Luis Ibañez en Kitware )

• Collaborative Research Initiatives

• Principios de colaboración abierta en la investigación (2005)

• Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.

Estado burocrático de la tesis

Director

Manuel Graña

primer año de cursos de doctorado

matriculado para el trabajo de investigación