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[[Imagen:Borja-Color.jpg | right | 350px | alt=Borja Ayerdi photo]]

== Borja Ayerdi Vilches ==

''Imagine the future, change the present''

<h3>Personal Data</h3>

* <b>E-mail:</b> borja.ayerdi@ehu.es 

* <b>Address:</b>
:Computational Intelligence Group 
:Computer Science Faculty - Lab. 307 
:University Of The Basque Country (UPV/EHU) 
:Paseo Manuel Lardizabal 1 - CP: 20018 Donostia/San Sebastián (GUIPUZCOA) - Spain

* <b>Tfno.:</b> (+34) 943.01.80.47

== Studies ==

* Technical Engineering in Information Management (2006/2009) - Universidad del País Vasco (UPV/EHU).
* Computer Science Engineer (2009/2011) - Universidad del País Vasco (UPV/EHU).
* [http://www.kisa.ehu.es/ Masters Degree in Computational Engineering and Intelligent Systems] (2011/2012) - Universidad del País Vasco (UPV/EHU).
* Currently: 
: PhD Student in the [http://www.ehu.es/ccwintco/ Computational Intelligence Group] of the Computer Science and Artificial Intelligence Department - Universidad del País Vasco (UPV/EHU).


== Research Areas ==

* Medical Image segmentation and registration.
* Machine Learning application to medical image processing.
* Extreme Learning Machines.
* Hyperspectral imaging.
* Social Networks.
* Big data.
* Active learning.
* Hybrid classification ensembles.


== Working experience ==

* January 2012 - ongoing: [http://www.hezkuntza.ejgv.euskadi.net/r43-5552/es/contenidos/informacion/dib4/es_2035/bfi2_c.html Beca predoctoral / Predoctoral fellowship] granted by Gobierno Vasco / Basque Government.

* September 2011 - December 2011: Personal Investigador Contratado / Hired researcher at Universidad del País Vasco (UPV/EHU), [http://www.ehu.es/ccwintco/ Computational Intelligence Group].
: Project: EVARTRAC CIRUGÍA GUIADA POR IMAGEN: APLICACIÓN A LA REPARACIÓN ENDOVASCULAR DE ANEURISMAS DE AORTA.


== Teaching ==

* Computer Vision (UPV/EHU 2015/2016)
* Computer Vision (UPV/EHU 2014/2015)
* Machine Learning and Neural Networks (UPV/EHU 2013/2014)

== Courses ==

* Vitoria-Gasteiz 2009 - (Intensive Programme) Network Security and 4n6


== Intership ==

* 2013 - [http://www.kssk.pwr.wroc.pl/machine-learning-team/1469/?lang=en Machine Learning Group], Wrocław University of Technology, Poland with Prof. Michal Wozniak


== Research projects participation ==

* Proyecto: Aprendizaje cooperativo inter e intragrupal en el submodulo de escructura y arquitectura de computadores.
** Entidad adjudicataria: UPV/EHU, Proyecto de Innovación Educativa 6719.
** Investigador principal: Jose Manuel Lopez Guede.
** Fechas: 2014 – 2015.


* Proyecto: Técnicas de inteligencia computacional en el proceso de imagen hiperespectral y aplicaciones.
** Entidad adjudicataria: Ministerio de Ciencia e Innovación del Gobierno Español, TIN2011-28753-C02-02.
** Investigador principal: Prof. Alicia d'Anjou.
** Fechas: 2011 – 2013.


== Publications ==

<h3>
Submitted without decision
</h3>


* Borja Ayerdi, Manuel Grana
: "Anticipative Hybrid Extreme Rotation Forest"
: ''IEEE Transactions on Neural Networks and Learning Systems''
: JCR 2014 - 4.291



<h3>
2015
</h3>


* Borja Ayerdi, Manuel Graña
: "Hyperspectral Image Analysis by Spectral-Spatial Processing and Anticipatively Tuned Hybrid Extreme Rotation Forest Classification"
: ''IEEE Transactions on Geoscience and Remote Sensing (TGARS)''
: JCR 2014 - 3.514



* Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto
: "Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis"
: ''Frontiers in Aging Neuroscience''
: JCR 2014 - 4.000


* A Besga-Basterra, B Ayerdi, G Alcalde-Behold,  A Manzano-Ramirez, P Lopetegui-Eraso, M Graña,  A González-Pinto-Arrillaga
: "Risk factors for emergency department short time readmission in stratified population"
: ''Biomed Research International''
: JCR 2014 - 1.579


* Borja Ayerdi, Oier Echaniz, Alexandre Savio, Manuel Graña 
: “Automated segmentation of subcutaneous and visceral adipose tissues from MRI”
: ''InMed 2015''


* Borja Ayerdi, Manuel Graña
: "Random Forest Active Learning for Detecting Blood Vessels in Angiography"
: ''CORES 2015''


* Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto
: "White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging"
: ''Current Alzheimer Research''
: JCR 2014 - 3.889 (Q1 Clin Neurol, T1 Neurosciences)


* Borja Ayerdi, Manuel Graña
: "Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble"
: ''Neurocomputing''
: JCR 2014 - 2.083 (Q1 CSAI) / [5-Year Impact Factor: 2.292]


<h3>
2014
</h3>

* Borja Ayerdi, Manuel Graña
: "Hyperspectral Image Nonlinear Unmixing by Ensemble ELM Regression"
:  Jiuwen Cao et al. (Eds.): Proceedings of ELM-2014 Volume 2, Proceedings in Adaptation, Learning and Optimization1, pp. 289-297. Springer. 


* Borja Ayerdi, Ion Marqués and Manuel Grana
: "Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation"
: ''Neurocomputing''
: JCR 2014 - 2.083 (Q1 CSAI) / [5-Year Impact Factor: 2.292]


* Borja Ayerdi, Manuel Grana
: "Hybrid Extreme Rotation Forest"
: ''Neural Networks''
: JCR 2014 - 2.708 (Q1 CSAI) /  [5-Year Impact Factor: 2.729]


* Pawel Ksieniewicz, Dariusz Jankowski, Borja Ayerdi, Konrad Jackowski, Michal Wozniak and Manuel Graña
: "A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation"
: ''Logic Journal of the IGPL''
: JCR 2012 - 1.136 (Q1 MATHEMATICS, Q1 APPLIED MATHEMATICS, Q1 LOGIC) / [5-Year Impact Factor: 0.79]


<h3>
2013
</h3>

* Borja Ayerdi, Ion Marqués and Manuel Grana
: "Spectral-spatial semi-supervised hyperspectral  image segmentation using Ensembles of Extreme  Learning Machines"
: ''ELM 2013, Beijing, October 15-17, 2013.''


*  J. Maiora , G. García , B. Ayerdi , M. Graña , M. De Blas
: "Active Learning enhanced with Expert Knowledge for Computed Tomography Image Segmentation"
: ''InMed 2013, Greece, 17-19 July, 2013.''


*  Borja Ayerdi, Josu Maiora, Manuel Graña
: "Aplications of Hybrid Extreme Rotation Forests  for Image Segmentation"
: ''Journal of Hybrid Intelligent Systems''


*  Borja Ayerdi, Josu Maiora, Manuel Graña
: "Enhancing Active Learning Computed  Tomography Image Segmentation with Domain  Knowledge"
: ''HAIS 2013, Salamanca, 11-13 September, 2013.''


* Borja Ayerdi, Alexandre Savio, Manuel Graña
: "Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features"
:  J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122--130. Springer, Heidelberg (2013) 


* Borja Ayerdi, Manuel Graña
: "On Spatial Regularization for Semisupervised Hyperspectral Image Segmentation Using Hybrid Extreme Rotation Forest"
: ''WHISPERS 2013, Gainesville, USA, 25-28 June, 2013.''


* Darya Chyzhyk, Borja Ayerdi, Josu Maiora
: "Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation"
: ''Pattern Recognition Letters''
: JCR 2013 - 1.062 (T1, Q2 CSAI) /  [5-Year Impact Factor: 1.466]


* Josu Maiora, Borja Ayerdi, Manuel Graña
: "Random Forest Active Learning for Computed Tomography Angiography Image Segmentation"
: ''Neurocomputing''
: JCR 2013 - 2.005 (Q1 CSAI) / [5-Year Impact Factor: 2.102]


<h3>
2012
</h3>

* Borja Ayerdi Vilches, Manuel Graña
: "Hybrid Extreme Rotation Forest".
: ''ELM 2012, Singapore, 11-13 December, 2012''. 


* Borja Ayerdi, Josu Maiora, Manuel Graña
: "Active learning of Hybrid Extreme Rotation Forests for CTA image segmentation".
: ''Hybrid Intelligent Systems (HIS), 2012 12th International Conference on (pp. 543-548)''. IEEE.


<h3>
2010
</h3>

* Ekaitz Zulueta Guerrero, Naiara Telleria Garay, Jose Manuel Lopez-Guede, Borja Ayerdi Vilches, Eider Egilegor Iragorri, David Lecumberri Castaños, Ana Belén de la Hoz Rastrollo and Carlos Pertusa Peña
: "Prediction of Bladder Cancer Recurrences Using Artificial Neural Networks"
: ''Lecture Notes in Computer Science, 2010, Volume 6076, Hybrid Artificial Intelligence Systems, Pages 492-499''.

== Conferences ==

* PyData 2014, Berlin ,25-27 July 2014.
* Europython 2014, Berlin ,21-27 July 2014.
* ELM 2013, Beijing, October 15-17, 2013.
* HAIS 2013, Salamanca, 11-13 September, 2013. 
* WHISPERS 2013, Gainesville, USA, 25-28 June, 2013. 
* IWINAC 2013, Mallorca, 10-14 June, 2013. 
* FIA 2013, Dublin, 8-10 May, 2013. 
* ELM 2012, Singapore, 11-13 December 2012.
* HIS 2012, Pune (India), 04-07 December 2012.

== Reviewer ==

* KES 2012
* Pattern Recognition Letters
* Neurocomputing
* IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (JSTARS)
* Pattern Analysis and Applications
* InMed 2014

== Organizer ==

* Local organizing committee member of Europython 2015 ([http://ep2015.europython.eu/ Europython 2015])
* Local organizing committee member of Python San Sebastian 2014 ([http://www.pyss.org Pyss14])
* Local organizing committee member of the KES International Conference on Innovation in Medicine and Healthcare - ([http://inmed-14.innovationkt.org/ INMED 2014]) 7, 8 & 9 July 2014, San Sebastian, Spain.
* Local organizing committee member of the 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.

== Other activities ==

* Treasurer and board member of the non-profit Python San Sebastian society (ACPySS)
* Treasurer and board member of the non-profit Euskopython society
* Treasurer and board member of the non-profit Europython society (EPS)

== Awards ==

* Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm][http://www.basqueresearch.com/berria_irakurri.asp?Berri_Kod=4843&hizk=I#.Ut475RC0qUk][http://www.diariovasco.com/20131211/economia/recibe-premio-manuel-laborde-201312111847.html][http://www.abc.es/agencias/noticia.asp?noticia=1549703][http://www.ehu.es/p200-content/es/contenidos/noticia/20131211_premio_laborde/es_laborde/20131211_premio_laborde.html]

* Alexandre Savio, Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echevarria, 2014 [http://www.noticiasdegipuzkoa.com/2014/05/29/economia/los-toribio-premian-proyectos-de-tecnologia-computacional][http://www.toribioechevarria.com/eu/2013-2014ko-irabazleak/] [https://www.youtube.com/watch?v=gthFBCrw2VQ&t=62m]

* Videos [https://www.youtube.com/watch?v=_VUSjxMkxCo Euskadinnova] [https://www.youtube.com/watch?v=-0eNpmyOTxA Premios Toribio Echeverria]

== Semana de la ciencia ==

* XI Semana de la Ciencia 2011 ([http://www.diariovasco.com/v/20111112/al-dia-local/cientificos-20111112.html Diario Vasco])
* XII Semana de la Ciencia 2012


== Software ==
* [http://www.ehu.es/ccwintco/index.php/GIC-source-code-free-libre GIC Source Code]
* [http://www.ehu.es/ccwintco/uploads/6/69/HERF.tar.gz Hybrid Extreme Rotation Forest (HERF) basic code]
* [http://www.ehu.es/ccwintco/uploads/c/c9/Farzad.zip Basic ELM code example]
* [http://www.ehu.es/ccwintco/uploads/2/26/AdaHERF.zip Adaptative Extreme Rotation Forest (AdaHERF) python code]


== Datasets ==

<h3>General Datasets</h3>

* [http://www.eecs.berkeley.edu/Research/Projects/CS/vision/grouping/segbench/ The Berkeley Segmentation Dataset and Benchmark]
* [http://www.ehu.es/ccwintco/index.php/Hyperspectral_Remote_Sensing_Scenes Hyperspectral Remote Sensing Images (Salinas A, Salinas C, Indian Pines, Pavia University)]
* [http://archive.ics.uci.edu/ml/ UCI Machine Learning Repository]
* [[GIC-experimental-databases | Post-processed datasets by Alex Savio.]]


<h3>Hyperspectral Datasets</h3>

* [http://www.ehu.es/ccwintco/index.php/Hyperspectral_Remote_Sensing_Scenes Hyperspectral Remote Sensing Scenes]
* [http://www.ehu.es/ccwintco/index.php/Hyperspectral_Camera_SOC710_Nature_Datasets Our own dataset!]
* [http://personalpages.manchester.ac.uk/staff/david.foster/Hyperspectral_images_of_natural_scenes_04.html Foster Hyperspectral Images]
* [http://www.foi.se/FOI/templates/Page____9189.aspx FOI HyperSpectral Images]
* [http://www.spectir.com/download.html Spectir Hyperspectral Images]
* [http://www.cvc.uab.es/color_calibration/Bristol_Hyper/ Bristol Hyperspecrtal Images]
* [https://sourceforge.net/p/hyperspectralim/wiki/Home/ SourceForge repository]
* [https://sourceforge.net/projects/hyperspectralim/ SourceForge Hyperspectral repository]


<h3>Medical Datasets</h3>

* [http://www.oasis-brains.org OASIS]
* [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]
* [http://adni.loni.ucla.edu/ ADNI]
* [http://www.nitrc.org/projects/brainmap BrainMap]
* [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]
* [http://insight-journal.org/midas MIDAS]
* [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]
* [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]


== Target journals ==

* [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=91 IEEE Transactions on Fuzzy Systems (IF 5.484)]
* [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&punumber=34 IEEE Transactions on Pattern Analysis and Machine Intelligence (IF 4.795)]
* [http://www.journals.elsevier.com/knowledge-based-systems/ Knowledge-Based Systems (IF 4.104)]
* [http://www.journals.elsevier.com/information-sciences/ Information Sciences (IF 3.643)]
* [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=36 IEEE Transactions on Geoscience and Remote Sensing (IF 3.467)]
* [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=4609443 IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (IF 2.874))]
* [http://www.springer.com/computer/ai/journal/11063 Neural Processing Letters (IF 1.240)]


== Utilities ==

* [http://www.ehu.es/ccwintco/uploads/2/2d/Vision_20140908.pdf Intro 08/09/2014]
* [https://www.accesowok.fecyt.es/jcr JCR]
* [https://www.accesowok.fecyt.es/?page_id=658 Web of Knowledge]
* [https://gestion-empleado.ehu.es Gestión de empleados UPV/EHU]
* [http://gestioncvb.ehu.es Gestión de aulas virtuales]
* [http://moodle5.ehu.es/ MOODLE]
* [https://gestion.ehu.es/gaur GAUR]
* [http://www.tic.ehu.es/p265-shintrct/es/contenidos/informacion/wifi/es_wifi/wifi_manual.html Eduroam UPV/EHU]
* [http://www.tic.ehu.es/p265-shintrct/es/contenidos/enlace/vpn_indice/es_indizea/vpn_indizea.html VPN UPV/EHU]
* [https://github.com/borjaayerdi My github]
* [https://www.linkedin.com/pub/borja-ayerdi-vilches/3a/b87/12b My LinkedIn]
* [http://scholar.google.es/citations?user=bVAL794AAAAJ My Google Scholar]
* [http://braincloudcomputing.com Brain Cloud Computing (BCC)]
* [http://bcig.eu/ BCIG]
* [http://gitlab.braincloudcomputing.com/ Gitlab]
* [http://www.cpt.univ-mrs.fr/~masson/latex/Beamer-appearance-cheat-sheet.pdf Beamer appearance cheat sheet]

== Tutorials ==

* [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]
* [http://roundhere.net/journal/virtualenv-ubuntu-12-10/ Virtual enviroment (Ubuntu)]
* [http://sebastianraschka.com/Articles/2014_matrix_cheatsheet.html Matrix Cheat Sheet MATLAB, Python NumPy, R, and Julia]
* [http://bioinformatiquillo.wordpress.com/2009/06/17/beamerposter-posters-elegantes-con-la-clase-latex-beamer-en-lyx-y-presentaciones-en-formato-panoramico/ Beamer poster LyX]
* [http://nbviewer.ipython.org/url/jakevdp.github.com/downloads/notebooks/XKCD_plots.ipynb XKCD plots]
* [https://github.com/mwaskom/ziegler Ziegler: fMRI Reporting Webapp]