Informazio orokorra

BEAST 1.8.2 is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.

Nola erabili

input.xml sarrera fitxeroa exekutatzeko erabili:

/software/bin/beast input.xml > output.log

Beste BEAST instalatutako programak:

beast, beauti, loganalyser, logcombiner eta treeannotator.

Benchmark

Aurkezten ditugu zerbitzuko makinetan egindako benchamrk txikia BEASTeko errendimendua aztertzeko. Beast oso ondo eskalatzen du 8 koreetaraino. 16 koreak erabiltzea pena merezi dezake oso lan luzeetan denbora oraindik nahiko murrizten delako, baina efizienzia ez da jadanik oso ona.

Informazio gehiago

BEAST programari buruz BEAST.