BLAST

General Information

2.2.24 version of BLAST de NCBI. Due to performance reasons it has not been installed in Itanium nodes.

 

Data bases

The Service has installed several data bases, contact the technicians to use them or install new ones.

How to use

To submit jobs to the queue system we strongly recomend to use the command

send_blast

it will make some questions to prepare the job

Performance and gpuBLAST

We have compared BLAST with mpiBLAST and gpuBLAST, the result of the bechmarks are in the blog of Service. [intlink id=”1495″ type=”post” target=”_blank”]mpiBLAST[/intlink] is installed in the Service.

 

More information

BLAST web page.

[intlink id=”1493″ type=”post”]Blast2GO[/intlink] y [intlink id=”1495″ type=”post” target=”_blank”]mpiBLAST[/intlink] is also installed.