General information
1.1.3 version. CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as [intlink id=”5875″ type=”post”]structure[/intlink], so that they match up as closely as possible. The user has the option of choosing one of three algorithms for aligning replicates, with a tradeoff of speed and similarity to the optimal alignment.
How to use
To execute CLUMPP in the queue system you must include in the script of the queue system:
/software/bin/CLUMPP
with the corresponding options of structure. We recommend to use [intlink id=”233″ type=”post”]qsub in interactive mode[/intlink] to submit the jobs