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R, RCommander and RStudio

General information

R 3.3.3 is a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.

RStudio an RCommander are a graphical front ends for R.

Installed packages

abind, ape, biomformat, cummeRbund, DCGL, DESeq2, DEXSeq, e1071, edgeR, FactoMineR, GEOquery, lavaan, metagenomeSeq, mnormt, optparse, psych, randomForest, Rcmdr, RColorBrewer, ReactomePA, RUVSeq, vegan, WGCNA, xlsx.

Please, ask if you need any more.

How to use it

To use R in the queue scripts execute:

/software/bin/R CMD BATCH  R-input-file.R

to execute RStudio you must connect to Txinparta or Katramila with X2Go and execute

rstudio

to execute RCommander you must connect to Txinparta or Katramila with X2Go and execute R. Then inside R load

library(Rcmdr)

More information

R web page.

rstudio web page.

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