https://ehu.eus/ccwintco/api.php?action=feedcontributions&feedformat=atom&user=Alexsavio 2026-04-11T21:39:21Z Contribuciones del usuario MediaWiki 1.38.6 https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=19503 2019-02-04T12:37:49Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * November/2018 - present - Cloud Applications Developer in Nordcloud Deutschland GmbH, München.<br /> <br /> * November/2017 - present - Part-time post-doctoral researcher in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München'''.<br /> <br /> * November/2017 - October/2018 - Engineer in Siemens AG, München.<br /> <br /> * April/2017 - October/2017 - IT Architect for MaibornWolff Gmbh, München.<br /> <br /> * October/2015 - March/2017 - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> ; Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev<br /> : ''Pypes: Workflows for Processing Multimodal Neuroimaging Data''<br /> : Front. Neuroinform., 11 April 2017<br /> : doi: 10.3389/fninf.2017.00025<br /> : https://doi.org/10.3389/fninf.2017.00025<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=19502 2019-02-04T12:37:30Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2018 - present - Cloud Applications Developer in Nordcloud Deutschland GmbH, München.<br /> <br /> * November/2017 - present - Part-time post-doctoral researcher in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München'''.<br /> <br /> * November/2017 - October/2018 - Engineer in Siemens AG, München.<br /> <br /> * April/2017 - October/2017 - IT Architect for MaibornWolff Gmbh, München.<br /> <br /> * October/2015 - March/2017 - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> ; Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev<br /> : ''Pypes: Workflows for Processing Multimodal Neuroimaging Data''<br /> : Front. Neuroinform., 11 April 2017<br /> : doi: 10.3389/fninf.2017.00025<br /> : https://doi.org/10.3389/fninf.2017.00025<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=19362 2018-04-22T09:03:21Z

<p>Alexsavio: </p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * November/2017 - present - Part-time post-doctoral researcher in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München'''<br /> <br /> * November/2017 - present - Engineer in Siemens AG, München<br /> <br /> * April/2017 - October/2017 - IT Architect for MaibornWolff Gmbh, München<br /> <br /> * October/2015 - March/2017 - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> ; Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev<br /> : ''Pypes: Workflows for Processing Multimodal Neuroimaging Data''<br /> : Front. Neuroinform., 11 April 2017<br /> : doi: 10.3389/fninf.2017.00025<br /> : https://doi.org/10.3389/fninf.2017.00025<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=19303 2017-12-30T12:46:48Z

<p>Alexsavio: </p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * November/2017 - present - Part-time post-doctoral researcher in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München'''<br /> <br /> * November/2017 - present - Engineer in Siemens AG, München<br /> <br /> * April/2017 - October/2017 - IT Architect for MaibornWolff Gmbh, München<br /> <br /> * October/2015 - March/2017 - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> ; Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev<br /> : ''Pypes: Workflows for Processing Multimodal Neuroimaging Data''<br /> : Front. Neuroinform., 11 April 2017<br /> : doi: 10.3389/fninf.2017.00025<br /> : https://doi.org/10.3389/fninf.2017.00025<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=19127 2017-04-11T12:53:27Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> ; Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev<br /> : ''Pypes: Workflows for Processing Multimodal Neuroimaging Data''<br /> : Front. Neuroinform., 11 April 2017<br /> : doi: 10.3389/fninf.2017.00025<br /> : https://doi.org/10.3389/fninf.2017.00025<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18937 2017-03-03T10:20:19Z

<p>Alexsavio: /* Software */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18936 2017-03-03T10:19:26Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2017<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev<br /> : ''Resting state networks as simultaneously measured with fMRI and PET''<br /> : The Journal of Nuclear Medicine, First published March 2, 2017, <br /> : doi: 10.2967/jnumed.116.185835<br /> : http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract<br /> <br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18918 2017-02-15T12:57:45Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2016<br /> &lt;/h3&gt;<br /> ; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev<br /> : ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI''<br /> : The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.<br /> : http://jnm.snmjournals.org/content/57/supplement_2/237.abstract<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18566 2016-04-11T15:41:44Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18554 2016-03-29T09:08:28Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Miembros&diff=18390 2016-01-31T15:16:03Z

<p>Alexsavio: /* Doctores egresados que no son profesores de la UPV/EHU */</p> <hr /> <div>==Profesorado UPV/EHU==<br /> <br /> *[[usuario:fx.albizuri | Albizuri, Xabier]]<br /> *[[usuario:Alicia.danjou | D'Anjou, Alicia]]<br /> *[[usuario:Bortx | Fernandez, Borja]]<br /> *[[usuario:josune.gallego | Gallego, Josune]]<br /> *[[usuario:AI.Gonzalez | González, Ana Isabel]]<br /> *[[usuario:manuel.grana | Graña, Manuel]]<br /> *[[usuario:Eloy.irigoyen| Irigoyen, Eloy]]<br /> *[[usuario:joseluis.jimenez | Jiménez, José Luis]]<br /> *[[usuario:juantonio.jimenezdevicuna | Jiménez de Vicuña, Juan Antonio]]<br /> *[[usuario:jm.lopez | López Guede, José Manuel]]<br /> *[[usuario:jmaiora | Maiora Oria, Josu]]<br /> *[[usuario:mariaeugenia.martinez | Martínez, Maria Eugenia]]<br /> *[[usuario:jibmomoa | Moujahid, Abdelmalik]]<br /> *[[usuario:Ekaitz.Zulueta | Zulueta, Ekaitz]]<br /> <br /> == Jubilados ==<br /> *[[usuario:Fernando.Ferreres | Ferreres, Fernando]]<br /> *[[usuario:Francisco.torrealdea | Torrealdea, Francisco Javier]]<br /> <br /> ==Doctorandos==<br /> <br /> <br /> *[[usuario:Borja.ayerdi | Borja Ayerdi]]<br /> <br /> * [[usuario:david.nunez | Jose David Nuñez Gonzalez]]<br /> <br /> * [[usuario:leire.ozaeta | Leire Ozaeta]]<br /> <br /> * [[usuario:oier.echaniz | Oier Echaniz]]<br /> <br /> * Julian Estevez<br /> <br /> * Maider<br /> <br /> * Eduardo Carrasco<br /> <br /> * Leire Ozaeta<br /> <br /> * Oier Etxaniz<br /> <br /> ==Doctores egresados que no son profesores de la UPV/EHU==<br /> *[[usuario:ion.marques | Marqués, Ion]]<br /> *[[usuario:Alexsavio | Savio, Alexandre]] post doc, promotor de Neurita, Brain Cloud Computing, post doc en la Technische Universitaet Muenchen<br /> *[http://www.cvc.uab.es/personal2.asp?id=287 Bogdan Raducanu]<br /> *[[usuario:orlmaldonado | Maldonado, Orlando]] actualmente en la Universidad de Pamplona en Colombia<br /> * Imanol Echave, trabaja en RSI internacional con sede en Paris.<br /> *[[usuario:Andoni.beristain | Beristain, Andoni]] actualmente en Vicomtech<br /> *[[usuario:zechegoyen | Echegoyen, Zelmar]] actualmente en Tecnalia. [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=165&amp;query=zelmar]<br /> *[[usuario:Ctoro | Toro, Carlos]] en Vicomtech<br /> *[[Macia, Ivan ]] en Vicomtech<br /> *[[Ramón Moreno Jiménez | Moreno Jiménez, Ramón]] postdoc en el GIC hasta diciembre 2012<br /> *[[usuario:maitelasarte | García-Sebastián, Maite]] <br /> *[[usuario:i.rebollo | Rebollo, Israel]] en Informatica 68 I+D S.L.<br /> *[[usuario:ivan.villaverde | Villaverde, Ivan]], actualmente en Tecnalia. [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=159]<br /> *[[usuario:maveganzones | Veganzones, Miguel Ángel]] en GIPSA-Lab, INP Universidad de Grenoble<br /> *[[usuario:ibarandiaran | Barandiarán, Iñigo]] en Vicomtech<br /> *[[usuario:daria.chizhik | Chyzhyk, Darya]] postodoc en la UPV/EHU<br /> *[[usuario:Elsa.Fernandez | Fernández, Elsa]]<br /> *[[usuario:eider.sanchez | Eider Sanchez]]<br /> * [[usuario:Rosalia | Rosalia Dacosta Aguayo]]<br /> <br /> == antiguos alumnos que no han realizado la tesis ==<br /> <br /> *[[usuario:pablo.ayala | Ayala, Pablo]]<br /> *[[usuario:josu.larranaga | Larrañaga, Josu]]<br /> *[[usuario:mikel.pajares | Pajares, Mikel]]<br /> *[[usuario:mai.termenon | Termenón, Maite]]<br /> *[[usuario:David.vicente | Vicente, David]]<br /> <br /> ==Grupos y personas con las que el grupo mantiene contacto==<br /> <br /> * Aalto University<br /> ** Francesco Corona [http://users.ics.tkk.fi/fcorona/]<br /> <br /> * Amparo Alonso Betanzos [http://aliana.dc.fi.udc.es/www-lidia/]<br /> <br /> * [http://bisite.usal.es/ Biomedicina, Sistemas Informáticos Inteligentes y Tecnología Educativa (BISITE)]<br /> ** Juan Corchado<br /> * [http://gti.upf.edu/catala/equip/00index_html Josep Blat]<br /> <br /> *[http://www.brahnam.info/index.php Sheryl Brhanam]<br /> <br /> * [http://www.icm.csic.es/ Instituto de Ciencias del Mar, CSIC]<br /> ** Emilio R. García Ladona<br /> <br /> * [http://www.cvc.uab.es/ Computer Vision Center]<br /> ** Bogdan Raducanu<br /> ** Juan J. Villanueva<br /> ** [http://www.cvc.uab.es/personal2.asp?id=76 Jordi Vitriá]<br /> <br /> * Javie de Lope Asian, UPM, [http://www.dia.fi.upm.es/~jdlope/publications.html]<br /> * [http://www2.ubu.es/gicap/ Emilio Corchado]<br /> <br /> <br /> * [http://home.utad.pt/~floresta Departamento Florestal - Universidade de Trás-os-Montes e Alto Douro]<br /> ** Domingos Lopes<br /> ** Leonia Nunes<br /> * Depto. Tecnología Informática y Computación, Universidad de Alicante<br /> ** [http://www.dtic.ua.es/~jgarcia José García]<br /> * [http://www.gii.udc.es Grupo Integrado de Ingeniería, Universidad de A Coruña]<br /> ** Richard J. Duro<br /> <br /> * Hatami, Nima [http://inls.ucsd.edu/~nima/]<br /> <br /> *INSTEC [http://www.instec.cu/]<br /> * [http://gici.uab.es/index.html Group of Interactive Coding of Images]<br /> ** Joan Serra<br /> * [http://www.ucm.es/info/QCAFCAII/grupos%20de%20investigacion.htm Instituto de Estudios Biofuncionales UCM]<br /> ** Manuel Cortijo<br /> ** Jesús Ruíz-Cabello<br /> * [http://www.innovaevision.com/ Innovae Vision]<br /> * [http://iiu.teikav.edu.gr/users/vgkabs Vassilis G. Kaburlasos]<br /> <br /> *KES International, Robert Howlett [http://www.rjhowlett.co.uk/]<br /> * Li-Wei Kuo, National Health Research Institutes, Taiwan <br /> <br /> * [http://www.fmri.uji.es/ Laboratorio de Neuroimagen funcional UJI] [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=408 en el groupware]<br /> ** Cesar Avila<br /> ** Alfonso Roberto Barrós Loscertales<br /> <br /> * [http://www2.hud.ac.uk/staffprofiles/staffcv.php?staffid=67 Joan Lu]<br /> * [http://www.umbc.edu/rssipl/people/aplaza/ Antonio Plaza] [http://www.unex.es/investigacion/grupos/hypercomp Grupo Hypercomp, Universidad de Extremadura]<br /> * [http://www3.uji.es/~pobil/ Angel P. del Pobil]<br /> * [http://atc.ugr.es/~aprieto/ Alberto Prieto]<br /> * [http://www.upriss.org.uk/top/research.html Uta Priss]<br /> * [http://www.ccd.uab.es/~josep/ Josep Rifá]<br /> * [http://www.cise.ufl.edu/~ritter/ Gerhard X. Ritter]<br /> <br /> *Dimitri Solomatine, Professor, Head of the Hydroinformatics Chair Group, UNESCO-IHE Institute for Water Education Web page: http://www.unesco-ihe.org/hi/sol<br /> <br /> <br /> *[http://samos.univ-paris1.fr/spip/ SAMOS Universite Paris 1]<br /> ** [http://samos.univ-paris1.fr/spip/COTTRELL-Marie?var_recherche=marie%20cottrell Marie Cottrell]<br /> * [http://www.multimag.es/grupo_UNED_02_detalle.php?User_Session=3a15fe34e375c95cf069c8aafd4948d7 Manuel Sebastian, Grupo de Investigación en Envejecimiento y Enfermedades Neurodegenerativas.UNED.]<br /> * Ann K. Shinn [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=406 sobre los datos]<br /> * [http://www.ime.unicamp.br/~sussner/ Peter Sussner]<br /> * Harri Valpola<br /> * [http://www.dice.ucl.ac.be/~verleyse/ Michael Verleysen]<br /> *P.P. Wang, Duke University, Prof. emeritus<br /> <br /> ==Visitantes==<br /> ; Provenientes del [http://www.isbs.fr/ ISBS] de la Universidad Paris XII<br /> <br /> * Mayo-Julio 2008: Jean Luc Lor, Charlotte Rosak [[lor-rosak-working-page|Working page]] sus cosas en el groupware están en[http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=137] Cosas de skull stripping [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=124&amp;query=skull%2Bstripping]<br /> * Mayo-Julio 2010: Juliette Charpentier, trabajando sobre imagen de resonancia magnética de difusión DTI<br /> <br /> ==Redes de las que el grupo es miembro==<br /> * [http://www.redaf.es/ Red de Agentes Físicos] (Miembro del GIC de contacto con la red: José Manuel López Guede)</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18293 2015-11-23T14:33:04Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK<br /> : ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI''<br /> : XX Medical Informatics &amp; Technologies Conference - 21-23 October 2015. Szcyrk, Poland.<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18291 2015-11-23T14:24:14Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto<br /> : ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis''<br /> : Frontiers in Aging Neuroscience. JCR 2014 - 4.000 <br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder''<br /> : Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> : ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification''<br /> : Neurocomputing (aceptado 6 de marzo) [6] <br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18245 2015-11-05T14:59:23Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany,<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br /> : Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18217 2015-10-13T20:41:37Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br /> : Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : http://dx.doi.org/10.1016/j.neucom.2014.02.076<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> ; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró<br /> : ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> ; Borja Ayerdi, Alexandre Savio, Manuel Graña<br /> : ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features''<br /> : IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> : J.M. Ferrandez et al. (Eds.): <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> : I. Rojas, G. Joya, and J. Cabestany (Eds.)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Manuel Graña<br /> : ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease''<br /> : Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio and Manuel Grana<br /> : ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI''<br /> : ELM 2012<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''<br /> : Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. <br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> ; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens<br /> : ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems''<br /> : Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> ; A. Bourisly, A. Savio, M. Graña<br /> : ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''<br /> : OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> ; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> : ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI''<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> ; A. Savio, A. Bourisly, M. Graña<br /> : ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques''<br /> : ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> ; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> : ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.''<br /> : Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''Deformation based features for Alzheimer's disease detection with linear SVM.''<br /> : [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> ; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa<br /> : ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI''<br /> : Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> : ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> : ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI''<br /> : Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> : Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),<br /> <br /> ; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández<br /> : ''A Lattice Computing approach for On-line fMRI analysis''<br /> : Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ; Darya Chyzhyk, Maite Termenón, Alexandre Savio<br /> : ''A Comparison of VBM Results by SPM, ICA and LICA''<br /> : Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''<br /> : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''<br /> : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa<br /> : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''<br /> : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> ; Maite García-Sebastián, A. M. Savio, M. Graña<br /> : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''<br /> : [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> ; Alexandre Manhaes Savio<br /> : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''<br /> : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18215 2015-10-13T20:34:13Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study''<br /> : Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br /> : Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI''<br /> : Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> ; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio<br /> : ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio &amp; Manuel Graña<br /> : ''Brain Cloud Computing: Brain image pre-processing made easy and boring''<br /> : Neurogune 14, San Sebastián, Spain.<br /> <br /> ; Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> : ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI''<br /> : 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.<br /> : Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> ; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> : ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''<br /> : Neurocomputing (in press)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18213 2015-10-13T20:31:38Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I; ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study'', Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> ; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br /> : Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18155 2015-10-02T14:11:47Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.<br /> : Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I; ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study'', Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18119 2015-09-22T09:56:06Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I; ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study'', Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18117 2015-09-22T09:55:54Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I; ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study'', Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18115 2015-09-22T09:55:13Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study<br /> : Contemporary Clinical Trials<br /> : Article accepted for publication: 21 Sep 2015<br /> : DOI: 10.1016/j.cct.2015.09.017<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Revistas&diff=18113 2015-09-22T09:54:47Z

<p>Alexsavio: /* aceptados */</p> <hr /> <div>[[media:Revistas-GIC-1984-2009.bib.zip|bib de revistas hasta 2009]]<br /> ==submitidos sin decision==<br /> <br /> <br /> ; Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Torán Pera, Forés Rosa, Dávalos A, Tibor A and Mataró M<br /> :Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br /> <br /> ;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br /> :Further Results Learning Hose Transport Control with Q-learning<br /> : Journal of Physical Agents (aceptado con revisiones)<br /> <br /> ; Borja Ayerdi, Manuel Grana<br /> : Adaptive Hybrid Extreme Rotation Forest<br /> : Neural Processing Letters<br /> : JCR 2013 1.237 (Q2 CSAI)<br /> <br /> ; Borja Ayerdi, Bartosz Krawczyk, Manuel Graña, Michal Wozniak<br /> : Combining One-Class Classifiers for Hyperspectral Image Segmentation<br /> : Fundamenta Informaticae<br /> ;Rosalia Dacosta Aguayo, PhD student; Tibor Auer; Manuel Graña; Carles Falcon; Marina Fernández-Andújar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargalló; Maite Barrios; IC Clemente; Toran Pera; Rosa Fores; Antoni Dávalos; Maria Mataró<br /> :Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br /> : Plos One<br /> <br /> ==aceptados ==<br /> <br /> ; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I<br /> : The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study<br /> : Contemporary Clinical Trials<br /> : Article accepted for publication: 21 Sep 2015<br /> : DOI: 10.1016/j.cct.2015.09.017<br /> <br /> <br /> ; Manuel Graña, Darya Chyzhyk<br /> : Image Understanding Applications of Lattice Auto-Associative Memories <br /> : IEEE Transactions on Neural Networks and Learning Systems, (aceptdo 24 julio)<br /> : DOI 10.1109/TNNLS.2015.2461451<br /> : JCR (2014) 4.291 (Q1 CSAI)<br /> <br /> ;Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br /> : White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br /> : Current Alzherimer Research, (accepted)<br /> : JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences) (2014) 3.889<br /> <br /> <br /> ;I. Macía, M. de Blas, J.H. Legarreta, L. Kabongo, O. Hernández, J.M. Egaña, J.I. Emparanza, A. García-Familiar, M. Graña<br /> :Standard and Fenestrated Endograft Sizing in EVAR Planning: Description and Validation of a Semi-automated 3D Software<br /> : Computerized Medical Imaging and Graphics [http://www.sciencedirect.com/science/article/pii/S0895611115000099] [http://www.journals.elsevier.com/computerized-medical-imaging-and-graphics/] (accept 16 enero 2015)<br /> : JC· 2013 1.496 (Q3 RNMMI)<br /> <br /> <br /> <br /> ;Fernández-Andújar M, Doornink F, Dacosta-Aguayo R, Soriano-Raya JJ, Miralbell J, Bargalló N, López-Cancio E, Pérez de la Ossa N, Gomis M, Millán M, ;Barrios M, Cáceres C, Clemente I, Dávalos A, Mataró M <br /> : Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients <br /> : Neuropsychology (aceptado 4 de abril 2014)<br /> : JCR (2012): 3.477 (Q1)<br /> <br /> ;Maria Mataró, Juan José Soriano-Raya, Jorge López-Olóriz, Júlia Miralbell, Rosalia Dacosta-Aguayo<br /> :CEREBROVASCULAR MARKERS IN LOWERED COGNITIVE FUNCTION<br /> :Journal of Alzheimer Disease, (accepted)<br /> :JCR (2013) 3.612 (Q1 clinical neu.)<br /> <br /> == online first==<br /> <br /> ;Manuel Graña, Eider Sanchez, Michal Wozniak<br /> :Editorial: Special Issue on Innovation in Medicine and Healthcare<br /> : Biosystems Engineering<br /> : DOi 10.1016/j.biosystemseng.2015.06.009<br /> :JCR (2014) ***<br /> <br /> <br /> ; Alexandre Savio, Manuel Graña<br /> :Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI<br /> :Neurocomputing (aceptado 10 enero 2015) [http://authors.elsevier.com/sd/article/S0925231215002970]<br /> : DOI 10.1016/j.neucom.2015.01.079<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> <br /> ;PAWEL KSIENIEWICZ, DARIUSZ JANKOWSKI, BORJA AYERDI, KONRAD JACKOWSKI, MICHAL WOZNIAK, MANUEL GRANA<br /> :A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation<br /> : Logic journal IGPL (aceptado noviembre 2014) [http://jigpal.oxfordjournals.org/content/early/2014/12/29/jigpal.jzu045.short]<br /> : JCR 2013 0.530 (Q2 Logic, Q3 Mathematics, Q4 MA) (2014) 0.461 (Q3 Logic, Q3 Mathematics, Q4 MA)<br /> <br /> ;Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br /> :Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification<br /> :Neurocomputing (aceptado 6 de marzo) [http://www.sciencedirect.com/science/article/pii/S0925231215011388]<br /> <br /> ; Borja Ayerdi, Manuel Graña<br /> : Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble<br /> : Neurocomputing [http://www.sciencedirect.com/science/article/pii/S0925231215011339]<br /> : doi 10.1016/j.neucom.2015.04.10<br /> <br /> ==2015==<br /> <br /> ; Manuel Graña, Eider Sanchez, Michal Woazniak<br /> : Special issue on innovations in medicine and healthcare<br /> : Biosystems Engineering, Volume 138, October 2015, Pages 1–3 [http://www.sciencedirect.com/science/article/pii/S1537511015001099]<br /> : DOI 10.1016/j.biosystemseng.2015.06.009<br /> <br /> ;Borja Fernandez-Gauna; Jose Manuel Lopez-Guede; Ismael Etxeberria-Agiriano; Igor Ansoategi; Manuel Graña<br /> :Reinforcement Learning endowed with safe veto policies to learn the control of L-MCRS<br /> :Information Sciences Volume 317, 1 October 2015, Pages 25–47 [http://www.sciencedirect.com/science/article/pii/S002002551500273X]<br /> : DOI 10.1016/j.ins.2015.04.005<br /> : JCR (2014) 4.038 (Q1 CSAI)<br /> <br /> ;Lopez-Guede, Jose M.; Fernandez-Gauna, Borja; Graña, Manuel; Zulueta, Ekaitz; <br /> :Training Multi-agent systems by Q-learning: approaches and empirical results<br /> : Computational Intelligence vol 31 num 3 pp. 498-512 [http://onlinelibrary.wiley.com/doi/10.1111/coin.12035/abstract]<br /> : DOI: 10.1111/coin.12035<br /> : JCR (2012) 1.000 (Q3 CSAI) (2013) 0.870 (2014) 0.673<br /> <br /> ;J. David Nuñez-Gonzalez, Manuel Graña, Bruno Apolloni, <br /> :Reputation Features for Trust Prediction in Social Networks, <br /> :Neurocomputing Volume 166, 20 October 2015, Pages 1–7 [http://www.sciencedirect.com/science/article/pii/S0925231215005494]<br /> : DOI 10.1016/j.neucom.2014.10.099<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> ;Ion Marques, Manuel Graña, Anna Kamińska-Chuchmała, Bruno Apolloni, <br /> :An experiment of subconscious intelligent social computing on household appliances, <br /> :Neurocomputing, Volume 167, 1 November 2015, Pages 32–43 (aceptado agosto 2014) [http://www.sciencedirect.com/science/article/pii/S0925231215005718]<br /> : DOI 10.1016/j.neucom.2014.08.103<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br /> : Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br /> : Neural Networks Volume 68, August 2015, Pages 23–33. [http://www.sciencedirect.com/science/article/pii/S0893608015000805]<br /> : DOI information: 10.1016/j.neunet.2015.04.002 <br /> : JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences) (2014) 2.708<br /> <br /> ; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br /> : Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br /> : International Journal of Neural Systems 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] [http://www.worldscientific.com/doi/abs/10.1142/S0129065715500070?src=recsys&amp;journalCode=ijns&amp;]<br /> : JCR 2013 6.056 (Q1 CSAI) (2014) 6.507<br /> <br /> ;A. Suberbiola, E. Zulueta, J.M. Lopez-Guede, I. Etxeberria-Agiriano, and M. Graña<br /> : Arm Orthosis/Prosthesis Movement Control Based on Surface EMG Signal<br /> : International Journal of Neural Systems 25(3):1550009 [http://www.worldscientific.com/doi/10.1142/S0129065715500094] (2015)<br /> : JCR 2013 6.056 (Q1 CSAI) (2014) 6.507<br /> <br /> ; MANUEL GRAÑA, J. DAVID NUÑEZ-GONZALEZ, LEIRE OZAETA, ANNA KAMIŃSKA-CHUCHMAŁA<br /> :Experiments of Trust Prediction in Social Networks by Artificial Neural Networks [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007725#.VRJqFkvXmlI]<br /> : Cybernetics and Systems Volume 46, Issue 1-2, 2015 pages 19-34<br /> : JCR (2012): 0.973 (Q3 CSC) (2013) 0.507 (2014) 0.840<br /> : DOI:10.1080/01969722.2015.1007725<br /> <br /> ; EIDER SANCHEZ, CARLOS TORO, MANUEL GRAÑA, CESAR SANIN, EDWARD SZCZERBICKI<br /> :Extended Reflexive Ontologies for the generation of clinical recommendations [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007723#abstract]<br /> : Cyberntetics and Systems Volume 46, Issue 1-2, 2015 pages 4-18<br /> : JCR (2012): 0.973 (Q3 CSC) (2013) 0.507 (2014) 0.840<br /> <br /> <br /> ;Julián Estévez, Jose Manuel Lopez-Guede, Manuel Graña<br /> : Quasi-stationary State Transportation of a Hose with Quadrotors<br /> : Robotics and Automous Systems (aceptado 5 sept) Volume 63, Part 2, January 2015, Pages 187–194 [http://www.sciencedirect.com/science/article/pii/S0921889014001791]<br /> : JCR (2013) 1.105, (Q3 Robotics, Q3 CSAI, Q3 ACS) (2014) 1.256 (Q2 Robotics, Q3 CSAI, Q3 ACS)<br /> <br /> <br /> ;M Graña, B Raducanu<br /> :Bioinspired and knowledge based techniques and applications<br /> : Neurocomputing Volume 150, Part A, 20 February 2015, Pages 1–3<br /> :DOI 10.1016/j.neucom.2014.09.039<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> <br /> ;Darya Chyzhyk, Manuel Graña<br /> :Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br /> : Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br /> : DOI 10.1016/j.neucom.2014.09.075<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> ;Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br /> :An active learning approach for Stroke lesion segmentation on multimodal MRI data<br /> : Neurocomputing Volume 150, Part A, 20 February 2015, Pages 26–36 [http://www.sciencedirect.com/science/article/pii/S0925231214012466]<br /> :DOI:10.1016/j.neucom.2014.01.077<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> <br /> ;Borja Ayerdi, Ion Marqués, Manuel Graña<br /> :Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation<br /> : Neurocomputing (aceptado 18 de enero 2014) Volume 149, Part A, 3 February 2015, Pages 373–386 [http://www.sciencedirect.com/science/article/pii/S0925231214011424] <br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> : DOI 10.1016/j.neucom.2014.01.068<br /> <br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna,Jose Antonio Ramos-Hernanz<br /> :Single robot dynamics approximation by ELM for Reinforcement Learning for hose control<br /> : Neurocomputing Volume 150, Part A, 20 February 2015, Pages 116–123<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> <br /> ;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> :A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data [http://www.sciencedirect.com/science/article/pii/S0925231214012454]<br /> : Neurocomputing Volume 150, Part A, 20 February 2015, Pages 37–42<br /> : JCR 2013 2.005 (Q1 CSAI) (2014) 2.083 (Q2 CSAI)<br /> <br /> ;Dacosta-Aguayo, Rosalia; Graña, Manuel; Iturria-Medina, Yasser; Fernández-Andújar, Marina; López-Cancio, Elena; Caceres, Cynthia; Bargallo, Nuria; Barrios, Maite; Clemente, Imma; Pera, Guillem; Fores, Rosa; Davalos, Antoni; Mataro, Maria<br /> :Impairment of Functional Integration of the Default Mode Network correlates with Cognitive Outcome at three months after Stroke<br /> : Human Brain Mapping Volume 36, Issue 2, February 2015, Pages: 577–590<br /> : DOI: 10.1002/hbm.22648<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences) (2014) 5.969<br /> <br /> ;Borja Fernandez-Gauna; Ismael Etxeberria-Agiriano; Manuel Graña<br /> :Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning<br /> : PlosOne, Volume 10(7): e0127129 ( published 09 Jul 2015)<br /> : JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.) (2014) 3.234<br /> : DOI 10.1371/journal.pone.0127129<br /> <br /> == 2014 ==<br /> <br /> ;Eider Sanchez, Peng Wang, Carlos Toro, Cesar Sanin, Manuel Graña, Edward Szczerbicki, Eduardo Carrasco, Frank Guijarro and Luis Brualla<br /> :Decisional DNA for modeling and reuse of experiential-based clinical assessments in breast cancer diagnosis and treatment<br /> : Neurocomputing Volume 146, 25 December 2014, Pages 308–318 [http://www.sciencedirect.com/science/article/pii/S0925231214007826]<br /> : JCR 2013 2.005 (Q1 CSAI)<br /> <br /> ; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br /> : Educational innovation project in the field of Industrial Informatics <br /> : Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 20–24<br /> : DOI 10.1016/j.sbspro.2014.05.006<br /> <br /> ; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br /> : Retrospective Vision of a Long Term Innovative Experience<br /> : Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 15–19<br /> : DOI 10.1016/j.sbspro.2014.05.005<br /> <br /> ;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br /> :Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br /> : Human Brain Mapping (aceptado 15 nov 2013) Volume 35, Issue 8, pages 3819–3831, August 2014 [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences) (2014) 5.969<br /> <br /> ;Borja Fernández-Gauna; Igor Ansoategui; Ismael Etxeberria-Agiriano; Manuel Graña<br /> :Reinforcement Learning of ball screw feed drive controllers<br /> :Engineering Applications of Artificial Intelligence Volume 30, April 2014, Pages 107–117 [http://www.sciencedirect.com/science/article/pii/S0952197614000220]<br /> : JCR (2011) 1.665 (Q1 ENG) (2012) 1.625 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2013) 1.962 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2014) 2.207 (Q1 ENG, Q2 ACS, Q1 CSAI, Q1 EEE)<br /> <br /> ;Borja Ayerdi and Manuel Graña<br /> :Hybrid Extreme Rotation Forest <br /> : Neural Networks Volume 52, April 2014, Pages 33–42 [http://www.sciencedirect.com/science/article/pii/S0893608014000045]<br /> : JCR (2012) 1.927 (Q1 CSAI, Q3 NS) (2013) 2.076 (Q1 CSAI, Q3 NS) (2014) 2.708<br /> <br /> ;Tuia, D. ; Merenyi, E. ; Jia, X. ; Grana-Romay, M.<br /> :Foreword to the Special Issue on Machine Learning for Remote Sensing Data Processing [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6804709]<br /> : Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of (Volume:7 , Issue: 4 ) pp. 1007 - 1011<br /> : JCR (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS) (2013) 2.827 (Q2 GP, Q1 ISPT, Q1 RS, Q1 EEE)<br /> <br /> ; Abdelmalik Moujahid, Alicia d'ANjou, Manuel Graña<br /> :Energy demands of diverse spiking cells from the neocortex, hippocampus and thalamus<br /> : Frontiers in Computational Neuroscience (2014) 8:41 [http://journal.frontiersin.org/Journal/10.3389/fncom.2014.00041/abstract]<br /> : DOI: 10.3389/fncom.2014.00041<br /> : JCR (2013) 2.233 (Q1 MCB, Q2 neurosciences)<br /> <br /> ;Iker Mesa, Eider Sanchez, Carlos Toro, Javier Diaz, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, Cesar Martinez, Jose Manuel Jimenez, Shabs Rajasekharan, Jose Antonio Alarcon, Alessandro De Mauro.<br /> :Design and Development of a Mobile Cardiac Rehabilitation System<br /> :Cybernetics and Systems: An International Journal, Volume 45 Issue 2 (2014), pp 92-108 [http://www.tandfonline.com/doi/full/10.1080/01969722.2014.874804#.UyF23OCEl48]<br /> :JCR (2012): 0.973 (Q3 CSC) (2013) 0.507 (2014) 0.840<br /> <br /> ;Israel Rebollo-Ruiz and Manuel Graña<br /> :An empirical evaluation of Gravitational Swarm Intelligence for Graph Coloring algorithm<br /> : Neurocomputing Volume 132, 20 May 2014, Pages 79–84 [http://www.sciencedirect.com/science/article/pii/S0925231213011041]<br /> : JCR (2011) 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> ;Rosalia Dacosta-Aguayo; Manuel Graña; Marina Fernandez-Andujar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargallo; Maite Barrios; Imma Clemente; Antoni Dávalos; Auer Tibor; Maria Mataró<br /> :Structural integrity of the contralesional hemisphere predicts cognitive impairment in ischemic stroke at three months<br /> : PLosONe January 2014 | Volume 9 | Issue 1 | e86119 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086119]<br /> : JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.) (2014) 3.234<br /> <br /> ; Ramon Moreno, Francesco Corona, Amaury Lendasse, Manuel Grana and Lenio Galvao<br /> : Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images<br /> : Neurocomputing Volume 128, 27 March 2014, Pages 207–216 [http://dx.doi.org/10.1016/j.neucom.2013.03.057]<br /> : JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> ; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br /> : Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br /> : Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br /> : ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br /> : JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> ;Josu Maiora; Borja Ayerdi; Manuel Graña<br /> : Random forest active learning for AAA thrombus segmentation in computed tomography angiography images<br /> : Neurocomputing Volume 126, 27 February 2014, Pages 71–77 [http://www.sciencedirect.com/science/article/pii/S0925231213006978]<br /> : (2011) JCR 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> ;Michal Wozniak,, Manuel Graña, Emilio Corchado, <br /> : A Survey of Multiple Classifier System as Hybrid Systems <br /> : Information Fusion Volume 16, March 2014, Pages 3–17 [http://www.sciencedirect.com/science/article/pii/S156625351300047X]<br /> : JCR (2011) 1.467 (Q2 CSAI, Q1 CSTM) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472 (2014) 3.681<br /> <br /> ; Michal Wozniak, Emilio Corchado, Manuel Graña<br /> :Guest Editorial: Hybrid Intelligent Fusion Systems<br /> : Information Fusion Volume 16, March 2014, Pages 2<br /> : (2011) JCR 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472 (2014) 3.681<br /> <br /> ;Carmen Hernández , Leónia Nunes , Domingos Lopes , Manuel Graña <br /> :Data Fusion for high spatial resolution LAI estimation <br /> :Information Fusion Volume 16, March 2014, Pages 59–67 [http://www.sciencedirect.com/science/article/pii/S1566253512000395]<br /> : JCR (2010) 1.621 (2011) 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472 (2014) 3.681<br /> <br /> ;B Ayerdi, J Maiora, A d'Anjou, M Graña<br /> :Applications of Hybrid Extreme Rotation Forests for image segmentation<br /> :International Journal of Hybrid Intelligent Systems 11 (1), 13-24<br /> <br /> ;Noelia Oses, Fadi Dornaika, and Abdelmalik Moujahid<br /> :Image-based delineation and classification of built heritage masonry [http://www.mdpi.com/2072-4292/6/3/1863]`<br /> :Remote Sens. 2014, 6(3), 1863-1889; doi:10.3390/rs6031863<br /> <br /> ==2013==<br /> <br /> ;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana<br /> :&quot;State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems&quot; , <br /> : International Journal of Uncertainty Fuzziness and Knowledge-Based Systems 21, supp02, 99-116 [http://www.worldscientific.com/doi/abs/10.1142/S0218488513400199]<br /> : JCR (2011) 1.781 (Q2 CSAI) (2012) 0.886 (Q3 CSAI)<br /> <br /> ;Miguel A. Veganzonesa, Mihai Datcu, Manuel Graña,<br /> : Further results on dissimilarity spaces for hyperspectral images RF-CBIR<br /> : Pattern Recognition Letters Volume 34, Issue 14, 15 October 2013, Pages 1659-1668 [http://www.sciencedirect.com/science/article/pii/S0167865513002237]<br /> : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br /> <br /> ;Israel Rebollo-Ruiz and Manuel Graña Romay <br /> :Swarm Graph Coloring for the identification of user groups on ERP logs <br /> : Cybernetics and systems Volume 44, Issue 6-7: 489–504, (2013) [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.803891#.UhuA7Ra5fyI]<br /> : JCR 2012 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br /> <br /> ; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br /> : Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br /> : Pattern Recognition Letters 34 (2013), pp. 1602-1608<br /> : DOI: 10.1016/j.patrec.2013.03.024<br /> : JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br /> <br /> ;Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Cesar Sanin, Edward Szczerbicki, Eduardo Carrasco and Frank Guijarro<br /> :Bridging challenges of Clinical Decision Support Systems with a semantic approach . A case study on breast cancer.<br /> : Pattern Recognition Letters 34 (2013), pp. 1758-1768 [http://authors.elsevier.com/sd/article/S016786551300144X] <br /> : JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br /> <br /> <br /> ;Edward Szczerbicki, Manuel Graña, Jorge Posada &amp; Carlos Toro <br /> : CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART I<br /> : Cybernetics and Systems 44(2-3):95-97 [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762247]<br /> : JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br /> <br /> ;Edward Szczerbicki, Manuel Graña, Jorge Posada &amp; Carlos Toro <br /> : CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART II<br /> : Cybernetics and Systems 44(2-3):184-186[http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762254]<br /> : JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br /> <br /> ;Iñigo Barandiaran, Manuel Graña, Marcos Nieto<br /> :An Empirical Evaluation of Interest Point Detectors<br /> :Cybernetics and Systems 44(2-3):98-117 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br /> : JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br /> <br /> <br /> ;Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbick, Manuel Graña, Jorge Posada<br /> : Impact of Reflexive Ontologies in Semantic Clinical Decision Support Systems [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762256]<br /> :Cybernetics and Systems 44(2-3):187-203 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br /> : JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br /> <br /> ;Borja Fernandez-Gauna; Ion Marques; Manuel Graña<br /> :Undesired State-Action Prediction in Multi-Agent Reinforcement Learning. Application to Multicomponent Robotic System control<br /> : Information Sciences (2013) 232:309–324 [http://www.sciencedirect.com/science/article/pii/S0020025513000133]<br /> : (2011) JCR 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS) (2013) 3.893<br /> <br /> ;Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila<br /> :&quot;Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural MRI data &quot; , <br /> : Neural Processing Letters December 2013, Volume 38, Issue 3, pp 375-387 [http://link.springer.com/article/10.1007/s11063-013-9277-x]<br /> : JCR (2012) 1.240 (Q2 CSAI) 2013 1.237 (Q2 CSAI)<br /> <br /> <br /> ;M. Termenon, M. Graña, A. Besga, J. Echeveste, A. Gonzalez-Pinto <br /> :Lattice Independent Component Analysis feature selection on Diffusion Weighted Imaging for Alzheimer’s Disease Classification <br /> : Neurocomputing (2013) Volume 114, 19 August 2013, Pages 132–141 [http://dx.doi.org/10.1016/j.neucom.2012.08.044]<br /> : JCR (2011) 1.580: (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) <br /> <br /> ;Eloy Irigoyen, , Gorka Miñano<br /> :A NARX neural network model for enhancing cardiovascular rehabilitation therapies<br /> : Neurocomputing (2013) 109(3):9–15<br /> : JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> <br /> ;Ion Marques, Manuel Graña<br /> : Fusion of lattice independent and linear features improving face identification<br /> : Neurocomputing Volume 114, 19 August 2013, Pages 80–85<br /> : JCR (2011) 1.580 : (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> ; M. Graña, A.I Gonzalez-Acuña<br /> : Learning Parsimonious Dendritic Classifiers<br /> : Neurocomputing (2013) 109(3):3–8 [http://dx.doi.org/10.1016/j.neucom.2012.03.025] [http://www.sciencedirect.com/science/article/pii/S0925231212006765]<br /> : JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : Deformation Based Feature Selection for Computer Aided Diagnosis of Alzheimer's Disease<br /> : Expert Systems With Applications 40 (2013), pp. 1619-1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009]<br /> : JCR (2011) 2.203 (Q1 in CSAI) (2012) (Q2 CSAI, Q1 EEE, Q1 ORMS) (2013) 1.965 (Q1 CSAI, Q2 EEE, Q1 ORMS)<br /> <br /> ; F. Dornaika, A. Moujahid, and B. Raducanu<br /> : Facial expression recognition using tracked facial actions: Classifier performance analysis<br /> : Engineering Applications of Artificial Intelligence 26(1), pp.467-477 (2013).<br /> : 5-Year Impact Factor: 1.844<br /> <br /> ;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> :Transfer Learning with Partially Constrained Models: application to reinforcement learning of linked multicomponent robot system control<br /> : Robotics and Autonomous Systems 61 (7) (2013):694–703 [http://dx.doi.org/10.1016/j.robot.2012.07.020]<br /> : JCR (2011) 1.056 (Q2 ACS, Q3 CSAI, Q3 Rob.) (2012) 1.156 (Q3 ACS, Q3 CSAI, Q2 Robotics) (2013) 1.105 (Q3 ACS, Q3 CSAI, Q3 Robotics)<br /> <br /> ; Manuel Graña, Adrian Agreda<br /> :Trust models and applications in communication and multi-agent systems<br /> : International Journal of Knowledge-based and Intelligent Engineering Systems 17 (2013) 187–193<br /> <br /> ;Diego Acosta · John Congote · Iñigo Barandiaran · Oscar Ruiz · Alejandro Hoyos · Manuel Graña<br /> :Tuning of Adaptive Weight Depth Map Generation Algorithms Exploratory Data Analysis and Design of Computer Experiments (DOCE)<br /> :Journal of Mathematical Imaging and Vision 47:3-12 [http://www.springer.com/alert/urltracking.do?id=Lcb6681Ma53e73Sa]<br /> : JCR (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767 (Q2 CSAI, Q1 CSSE, Q1 MA) (2013) 2.330 (Q1 CSAI, Q1 CSSE, Q1 MA) <br /> <br /> ;Bosaghzadeh, A., Moujahid, A., &amp; Dornaika, F. <br /> :Parameterless local discriminant embedding. <br /> :Neural Processing Letters August 2013, Volume 38, Issue 1, pp 53-67<br /> : JCR (2012) 1.240 2013 1.237 (Q2 CSAI)<br /> <br /> == 2012 ==<br /> <br /> <br /> ;Jose Manuel Lopez-Guede, Borja Fernadez-Gauna, Manuel Graña, Fernando Oterino and Jesus Maria Larrañaga <br /> :Effect of the Lambda Parameter in Dynamic Matrix Controllers Performance<br /> : Journal of Computer and Information Technology Vol.2, No.2, pp. 81-88<br /> <br /> ;A. Moujahid, A. D'Anjou<br /> :Metabolic efficiency with fast spiking in the squid axon<br /> : Front. Comput. Neurosci. 6:95. doi: 10.3389/fncom.2012.00095 [http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00095/abstract]<br /> : 5-Year Impact Factor: 2.147<br /> <br /> ;R. Moreno , D. M. Ramik , M. Graña , and K. Madani<br /> :Image Segmentation on the Spherical Coordinate Representation of the RGB Color Space [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&amp;arnumber=6407287]<br /> :IET Image Processing 6(9):1275 - 1283<br /> : jCR (2010) 0.862 (2011) 0.639 (Q3 EEE) (2012) 0.895 (Q3 EEE)<br /> <br /> ; A. Moujahid, A. D'Anjou, B. Cases<br /> : Community structure in real-world networks from a non-parametrical synchronization-based dynamical approach. <br /> : Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena<br /> : Volume 45, Issues 9–10, September–October 2012, Pages 1171–1179 <br /> : JCR 5-Year Impact Factor: 1.41<br /> <br /> ; A. Besga, M. Termenon, M. Graña, J. Echeveste, J. M. Perez, A. Gonzalez-Pinto<br /> : &quot;Discovering Alzheimer's disease and bipolar disorder white matter effects building computer aided diagnostic systems on brain diffusion tensor imaging features&quot; [http://www.sciencedirect.com/science/article/pii/S0304394012006799].<br /> : '''Neuroscience Letters''', Volume 520, Issue 1, 27 June 2012, Pages 71–76.<br /> : JCR (2011) 2.105 (Q3 Neurosciences) (2012) 2.026 (Q3 Neurosciences)<br /> <br /> ;Manuel Graña, Miguel A. Veganzones<br /> : [http://www.sciencedirect.com/science/article/pii/S0031320312001483 &quot;An Endmember-based distance for content based hyperspectral image retrieval.&quot;]<br /> : Pattern Recognition 49(9), pp 3472-3489. September 2012. [http://dx.doi.org/10.1016/j.patcog.2012.03.015 doi]<br /> : JCR (2010) 2.607 (2011) 2.292 (Q1 CSAI, Q1 EEE) (2012) 2.632<br /> <br /> ;Ion Marques, Manuel Graña<br /> :Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines<br /> : Soft Computing, 2012,Volume 16, Issue 9, pp 1525-1537 [http://dx.doi.org/10.1007/s00500-012-0826-4 DOI]<br /> : JCR (2010) 1.512 (2011) 1.880 (Q2 CSAI, Q1 CSIA) (2012) 1.124 (Q3 CSAI, Q3 CSIA)<br /> <br /> ; Israel Rebollo, Manuel Graña, Blanca Cases<br /> :On the effect of spatial percolation on the convergence of Graph Coloring Boid Swarm<br /> : Int. Journal on Artificial Intelligence Tools (2012) 21(6): 1250015 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/87/IJAIT-convergence-percolation-boids-2010-12-26-submitted.zip] [http://www.worldscientific.com/doi/abs/10.1142/S0218213012500157]<br /> : JCR (2010) 0.330 (2011) 0.217 (2012) 0.250 (Q4 CSAI, Q4 CSIA)<br /> <br /> ; Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TE<br /> : Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems<br /> : Magnetic Resonance in Medicine (2012) 68(6):1846-1855 [http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract]<br /> : ISSN 0740-3194<br /> : JCR (2010): 3.268 (2011) 2.964 (2012) 3.267 (Q1 RNMMI)<br /> <br /> ;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br /> : Improving the control of single robot hose transport <br /> : Cybernetics and Systems: An International Journal, 2012, 43:4, 261-275<br /> : JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br /> <br /> ;Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br /> :Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br /> : Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br /> : [http://dx.doi.org/10.1016/j.neucom.2011.02.024 DOI]<br /> : ISSN 0925-2312<br /> : ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> ; Emilio Corchado, Manuel Graña, Michal Wozniak<br /> : Neurocomputing January 2012, Volume 75, Issue 1, pp. 61-63<br /> : editorial New trends and applications on hybrid artificial intelligence systems [http://www.sciencedirect.com/science/article/pii/S0925231211004206]<br /> : JCR (2010) 1.429, : (2011) JCR 1.580 (Q2 CSAI)<br /> <br /> ;Miguel A. Veganzones and Manuel Graña<br /> :[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&amp;arnumber=6169956&amp;contentType=Journals+%26+Magazines&amp;queryText%3Dspectral+spatial+cbir &quot;A spectral/spatial CBIR system for hyperspectral images.&quot;]<br /> : IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing 5(2), pp 488-500. April 2012.<br /> : JCR (2010) 1.140 (2011) 1.489 (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS)<br /> <br /> ;Manuel Graña and Miguel A. Veganzones<br /> :[http://asp.eurasipjournals.com/content/2012/1/64 &quot;Endmember induction by Lattice Associative Memories and Multi-Objective Genetic Algorithms.&quot;]<br /> : EURASIP Journal on Advances in Signal Processing 2012, nº. 1 (marzo 13, 2012): 64. [http://www.biomedcentral.com/content/qcpdf/1687-6180-2012-64.pdf pdf]<br /> :JCR (2010) 1.012 (2011) 0.811 (2012) 0.807 (Q3 EEE)<br /> <br /> ;Maite Termenon, Manuel Graña<br /> :A two stage sequential ensemble applied to the classification of Alzheimer's Disease based on MRI features [http://www.springerlink.com/content/x74212k073375777/]<br /> : Neural Processing Letters (2012) 35(1): 1-12 <br /> : JCR (2010) 1.088 (2012) 1.240 (Q2 CSAI)<br /> <br /> ;Ivan Macia, Manuel Graña; Celine Paloc,<br /> : Knowledge Management in Image-based Analysis of Blood Vessel Structures<br /> :Knowledge and Information Systems 30(2) (2012):457-491 [http://www.springerlink.com/content/l747p10765858h1j/]<br /> : JCR Impact factor (2009) 2.211 (2010) 2.000 (2011) 2.225<br /> <br /> <br /> ;Andoni Beristain, Manuel Graña, Ana I. Gonzalez<br /> :A Pruning Algorithm for Stable Voronoi Skeletons<br /> : Journal of Mathematical Imaging and Vision (2012) 42:225–237 <br /> : JCR (2009) 1.437 (2010) 1.244 (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br /> <br /> ;Z. Echegoyen, J.M. Lopez-Guede, B. Fernandez-Gauna and M. Graña<br /> : Visual Servoing of Legged Robots<br /> : Journal of Mathematical Imaging and Vision 42(2) (2012): 196-211 [http://www.springerlink.com/content/c4x1r11188l31083/ doi]<br /> : JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br /> <br /> ;Peter Sussner, Estevão L.Esmi, Ivan Villaverde, Manuel Graña<br /> :The Kosko Subsethood FAM: Mathematical Background, Properties, and Some Experimental Results in Computer Vision<br /> : Journal of Mathematical Imaging and Vision (2012) 42:134–149 <br /> : JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br /> <br /> ;Manuel Graña, Emilio Corchado, Michal Wozniak<br /> :Special Issue on Hybrid Artificial Intelligent Systems <br /> : Journal of Mathematical Imaging and Vision: Volume 42, Issue 2 (2012), Page 101-102 [http://www.springerlink.com/content/457024354t87u21u/ doi]<br /> : JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br /> <br /> ;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. &amp; Graña M. (2011). <br /> :Experiments for the selection of sub-word units in the Basque context for semantic tasks, <br /> :International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 49-56<br /> : DOI 10.1007/s10772-011-9109-1<br /> <br /> ;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. &amp; Graña M. (2011) <br /> :Semantic Speech Recognition in the Basque context Part I: Cross-lingual approaches, <br /> :International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 33-40<br /> : DOI 10.1007/s10772-011-9111-7<br /> <br /> ;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. &amp; Graña M. (2011). <br /> :Semantic Speech Recognition in the Basque context Part II: Language Identification for under-resourced languages, <br /> :International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 41-47<br /> : DOI 10.1007/s10772-011-9114-4<br /> <br /> ;Juan José Valera García Vicente Gómez Garay, Eloy Irigoyen Gordo, Fernando Artaza Fano, Mikel Larrea Sukia<br /> :Intelligent Multi-Objective Nonlinear Model Predictive Control (iMO-NMPC): Towards the ‘on-line’ optimization of highly complex control problems<br /> :Expert Systems with Applications, Volume 39, Issue 7, 1 June 2012, Pages 6527–6540<br /> : JCR (2010) 1.924<br /> <br /> ;Carlos Toro, Eider Sanchez, Eduardo Carrasco, Leonardo Mancilla-Amaya, Cesar Sanín, Edward Szczerbicki, Manuel Graña, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro<br /> :USING SET OF EXPERIENCE KNOWLEDGE STRUCTURE TO EXTEND A RULE SET OF CLINICAL DECISION SUPPORT SYSTEM FOR ALZHEIMER'S DISEASE DIAGNOSIS [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/465/ToroSanchez2012.pdf]<br /> :Cybernetics and Systems: An International Journal, 2012. Volume 43, Issue 2, pp 81-95 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2012.654070 doi]<br /> :JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br /> <br /> Carlos Toro, Javier Vaquero, Manuel Graña, Cesar Sanín, Edward Szczerbicki &amp; Jorge Posada<br /> :BUILDING DOMAIN ONTOLOGIES FROM ENGINEERING STANDARDS [http://www.tandfonline.com/doi/full/10.1080/01969722.2012.654073#.VDGS9ufhpiU]<br /> ;Cybernetics and Systems 2012, 43(2): 114-126<br /> :JCR (2010) 0.662 (2011) 1.182 (Q2 CSC) (2012) 0.973<br /> <br /> <br /> ;Blanca Cases, Israel Rebollo, Manuel Graña <br /> :A Spatial-social-logical model explaining human behavior in emergency situations <br /> : Logic Journal of the IGPL 20(3):625-633<br /> : Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br /> <br /> ;Josune Gallego, Carmen Hernandez, Manuel Graña<br /> :A Morphological Cellular Automata based on Morphological Independence <br /> : Logic Journal of the IGPL 20(3):617-624<br /> : Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br /> <br /> ; Manuel Graña, Emilio Corchado, Michal Wozniak<br /> :Special issue: HAIS 2010<br /> : Logic Journal of the IGPL 20(3):533-534<br /> : doi: 10.1093/jigpal/jzr001 [http://jigpal.oxfordjournals.org/content/early/2011/02/24/jigpal.jzr001.full.pdf]<br /> : Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br /> <br /> <br /> ;G. García, J. Maiora A. Tapia, M. De Blas<br /> :Evaluation of Texture for Classification of Abdominal Aortic Aneurysm After Endovascular Repair<br /> :Journal of Digital Imaging 25(3):369-376<br /> :(ISI JCR 0.96) (2011) 1.255 (Q3 RNMMI)<br /> <br /> ; Manuel Graña, Ivan Villaverde, Jose Manuel Lopez-Guede, Borja Fernandez-Gauna<br /> : Lattice Independent Component Analysis for Appearance Based Mobile Robot Localization<br /> : Neural Computing and applications, 21(5) (2012): 1031-1042<br /> : Indice de impacto JCR (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI) (2012) (Q3 CSAI) (2012) 1.168<br /> <br /> ==2011==<br /> <br /> ; Josu Maiora, Manuel Graña<br /> : A computer aided diagnostic system for survival analysis after EVAR treatment<br /> : Journal of Medical Informatics &amp; Technologies, (2011) 18:51-58<br /> <br /> ;Ivan Macia; Manuel Graña; Josu Maiora; Celine Paloc; Mariano de Blas<br /> :Detection of Type II Endoleaks in Abdominal Aortic Aneurysms After Endovascular Repair<br /> :Computers in Biology and Medicine 41(10): 871-880 [http://dx.doi.org/10.1016/j.compbiomed.2011.07.005]<br /> : ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br /> <br /> ;M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br /> :Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson’s correlation<br /> :Neuroscience letters,Volume 502, Issue 3, 20 September 2011, Pages 225-229 [http://dx.doi.org/10.1016/j.neulet.2011.07.049 on line]<br /> : Indice de impacto JCR (2010) 2.055 (2011) 2.105 (Q3 Neurosciences)<br /> <br /> ; Manuel Graña, Borja Fernandez-Gauna, Jose Manuel Lopez-Guede<br /> :Cooperative Multi-Agent Reinforcement Learning for Multi-Component Robotic Systems: guidelines for future research<br /> : Paladyn . Journal of Behavioral Robotics. [http://www.editorialmanager.com/paladyn/mainpage.html] 2(2):71-81 [[media:Draft-2011-07-01-Paladyn.MARLReview.Grana.Borja.pdf|draft]]<br /> <br /> ;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br /> :Energy and information in Hodgkin-Huxley neurons<br /> :Phys. Rev. E 83, 031912 (2011)<br /> :Impact Factor: 2.400<br /> <br /> ;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br /> :Efficient synchronization of structurally adaptive coupled Hindmarsh-Rose neurons<br /> :Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena, DOI:10.1016/j.chaos.2011.07.005 (2011)<br /> :Impact Factor: 1.72<br /> <br /> ; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br /> : Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br /> : Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI]<br /> : ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br /> <br /> ;Borja Fernandez-Gauna, Jose Manuel Lopez Guede, Ekaitz Zulueta, Zelmar Echegoyen, Manuel Graña<br /> : Basic Results and Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation <br /> : International Journal of Artificial Intelligence (IJAI) 6(S11):183-202 [http://www.ceserp.com/cp-jour/index.php?journal=ijai&amp;page=article&amp;op=view&amp;path%5B%5D=923]<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d’Anjou<br /> :Illumination Source Chromaticity Estimation Based on Spherical Coordinates in RGB<br /> : Electronics letters, (2011) 47(1):28–30 [http://dx.doi.org/10.1049/el.2010.2735 DOI]<br /> : An implementation can be found in [[Illumination Source Chromaticity Estimation (ISC)]] <br /> : ISI JCR (2009) 0.970<br /> <br /> ;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br /> :Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br /> : Information Sciences 181 (2011), pp. 1910-1928 <br /> :Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.836 (2011) 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS)<br /> : [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br /> <br /> ;Javier Vaquero, Carlos Toro, Manuel Graña<br /> : Preserving Virtual Engineering Knowledge thorough the Product Life Cycle<br /> : Cybernetics &amp; Systems 42 (2): 124-138. <br /> : ISSN: 0196-9722 (Print), 1087-6553 (Online), Taylor and Francis publishers (2011)<br /> : ISI JCR (2009) 0.780 (2010) 0.662 (2011) 1.182 (Q2 CSC)<br /> : [[media:Draft jvaquero 2010.pdf|draft of the paper]]<br /> <br /> <br /> ; Ivan Villaverde, Manuel Graña<br /> :Neuro-Evolutionary mobile robot egomotion estimation with a 3D ToF camera<br /> : Neural Computing and applications 20(3): 345-354, [http://dx.doi.org/10.1007/s00521-010-0384-6 DOI]<br /> : ISI JCR (2008) 0.767 (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI)<br /> <br /> ==2010==<br /> <br /> ; Miguel Angel Veganzones, Leonia Nunes, Domingos Lopes, Carmen Hernández and Manuel Graña<br /> : Implementation of an user-friendly interface of the Forest-BGC model for regional/global-scale researches<br /> : [http://www.inrb.pt/inia/silva-lusitana SILVA LUSITANA], Año XVIII, December 2010.<br /> : Instituto Nacional de Investigaçao Agraria (Eds.); Portugal.<br /> : ISSN 0870-6352.<br /> <br /> ;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta, Manuel Graña <br /> :Learning hose transport control with Q-learning <br /> : Neural Network World 20(7):913-923 [http://www.nnw.cz/obsahy10.html]<br /> : ISI JCR 2009: 0.475 (2010) 0.511<br /> <br /> ;Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br /> :Neural classifiers for schizophrenia diagnostic support on diffusion imaging data<br /> : Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html]<br /> : ISI JCR 2009: 0.475 (2010) 0.511 (2011) 0.646 (Q4 CSAI)<br /> <br /> ;E. Irigoyen, M. Larrea, J. Valera, V. Gómez, F. Artaza<br /> :A Neuro‐Genetic Control Scheme application for industrial R^3 workspaces<br /> : Neural Network World 20(7):811-824 [http://www.nnw.cz/obsahy10.html]<br /> : ISI JCR 2009: 0.475 (2010) 0.511<br /> <br /> ;Maiora, J., Garcia, G., Tapia, A., Macia, I., Legarreta, J.H., Paloc, C., De Blas, M. &amp; Grana, M.<br /> :Thrombus Change Detection After Endovascular Abdominal Aortic Aneurysm Repair<br /> :International Journal of Computer Assisted Radiology and Surgery<br /> :Springer-Verlag, 2010, Vol. 5 (Suppl 1), pp. S15<br /> : IF JCR (2011) 1.481<br /> <br /> ; Iñigo Barandiaran, Celine Paloc, Manuel Graña<br /> :Real-time Optical Markerless Tracking for Augmented Reality Applications<br /> :J Real-Time Image Processing 5(2):129-138 [http://www.springerlink.com/content/1861-8200], doi [http://www.springerlink.com/content/x281360862565132/]<br /> : Impact factor JCR (2010): 0.962 (2011) 1.020 (Q3 CSAI, Q3 EEE, Q2 ISPT)<br /> <br /> ;Z. Echegoyen, I. Villaverde, R. Moreno, M. Graña, A. d’Anjou<br /> :Linked Multi-Component Mobile Robots: modeling, simulation and control<br /> : Robotics and Autonomous Systems 58(12) : 1292-1305<br /> :Impact Factor (2008): 1.214 (2009) 1.361 (2010) 1.313<br /> : DOI [http://dx.doi.org/10.1016/j.robot.2010.08.008]<br /> <br /> ; Ramón Moreno, Manuel Graña, Ekaitz Zulueta<br /> :An RGB Color Gradient following Color Constancy Preservation<br /> : Electronics Letters 46(13): 908--910<br /> : ISI JCR (2009) 0.970 (2010) 1.001<br /> <br /> ;Richard J Duro; Manuel Graña Romay; Javier de Lope Asiain,<br /> :On the Potential Contributions of Hybrid Intelligent Approaches to Multicomponent Robotic System Development [[media:14-04-09-Hais2008-Duro.pdf|draft]] <br /> : Information Sciences 180 (14):2635-2648<br /> : DOI [http://dx.doi.org/10.1016/j.ins.2010.02.005]<br /> : Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.833<br /> <br /> ; Andoni Beristain, Manuel Graña<br /> : A pruning algorithm for Voronoi Skeletons<br /> : Electronics Letters 46(1):39-41 <br /> :ISI JCR (2008) 1.140 (2009) 0.970 (2010) 1.001<br /> <br /> ;Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández. <br /> :A Lattice Computing approach for On-line fMRI analysis, <br /> :Image and Vision Computing 28(7):1155-1161, July 2010, <br /> : DOI http://dx.doi.org/10.1016/j.imavis.2009.10.004<br /> :ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> ==2009==<br /> <br /> ;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid, N. Vélez de Mendizábal<br /> :Energy efficiency of information transmission by electrically coupled neurons<br /> :Biosystems, Volume 97, Issue 1, July 2009, Pages 60-71<br /> :Impact factor: 1.646<br /> <br /> ;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou<br /> :Energy consumption and information transmission in model neurons<br /> :Chaos, Solitons &amp; Fractals, Volume 40, Issue 1, 15 April 2009, Pages 60-68<br /> :Impact factor: 3.025 (2009) 3.315<br /> <br /> ;Maite García-Sebastián, Ana Isabel González, Manuel Graña<br /> :An Adaptive Field Rule for Non-parametric MRI Intensity Inhomogeneity Estimation Algorithm [http://dx.doi.org/10.1016/j.neucom.2008.12.034]<br /> :Neurocomputing 72 (2009) 3556–3569<br /> :DOI: doi:10.1016/j.neucom.2008.12.034<br /> : ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br /> :JCR (2008) 1.234<br /> <br /> ;Abdelmalik Moujahid, Blanca Cases, F.J. Olasagasti<br /> :Consensus dynamics in a dolphin social network<br /> :CEUR Workshop Proceedings, vol-442,2 (ISSN 1613-0073) <br /> <br /> ;Blanca Cases, F.Javier Olasagasti, Abdelmalik Moujahid, Alicia D'Anjou <br /> :Swarm Intelligence: una aplicación a la toma de decisiones colectivas<br /> :CEUR Workshop Proceedings, vol-442,6 (ISSN 1613-0073) <br /> <br /> ;Andoni Beristain, Manuel Graña.<br /> :Emotion Recognition Based on the Analysis of Facial Expressions.<br /> : New Mathematics and Natural Computation (NMNC), 5(2) pp.513-534 (world scientific press [http://www.worldscinet.com/nmnc/nmnc.shtml])<br /> <br /> ;Manuel Graña, Ivan Villaverde, José Orlando Maldonado, Carmen Hernandez<br /> :Two Lattice Computing approaches for the unsupervised segmentation of Hyperspectral Images<br /> : Neurocomputing, 72(2009):2111–2120<br /> : ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br /> : DOI 10.1016/j.neucom.2008.06.026<br /> <br /> ; Manuel Graña<br /> : Special issue on the Lattice Computing and Natural Computing track from JCIS 2007<br /> : Neurocomputing 72:2065–2066<br /> : ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br /> : DOI http://dx.doi.org/10.1016/j.neucom.2008.11.021<br /> <br /> ;Maite García-Sebastián, Carmen Hernandez, Alicia d'Anjou<br /> :Robustness of an Adaptive MRI Segmentation Algorithm Parametric Intensity Inhomogeneity Modeling [http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6V10-4V59VW3-8&amp;_user=984461&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;view=c&amp;_acct=C000049823&amp;_version=1&amp;_urlVersion=0&amp;_userid=984461&amp;md5=706b7323a65e4074fdf4015bcb1a34d3]<br /> :Neurocomputing 72 (2009) 2146-2152. [[BibTeX]]<br /> : ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br /> : DOI 10.1016/j.neucom.2008.07.014<br /> <br /> ==2008==<br /> <br /> ;Pablo González-Nalda and Blanca Cases<br /> :Topos: Spiking neural networks for temporal pattern recognition in complex real sounds<br /> :Neurocomputing, (2008) 71(4-6) :721-732<br /> : JCR 2008 1.234 JCR 2009 1.440<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen, Manuel Graña<br /> : Neuro-Evolutive system for ego-motion estimation with a 3D camera<br /> : Australian Journal of Intelligent Information Systems, 10(1):59-70<br /> : ISSN 1321-2133<br /> <br /> ;Israel Rebollo, Manuel Graña<br /> : Aplicaciones de RFID<br /> : Novatica,195:42-46, sept. 2008, <br /> <br /> ; Jose Orlando Maldonado, Manuel Graña<br /> :Recycled paper visual indexing for quality control<br /> : Expert Systems with Applications, 45(4) pp 8807–8815<br /> : ISI JCR 2007 1.177- 2008 2.596 (Q1 CSAI, Q1 EEE, Q1 ORMS)<br /> : http://dx.doi.org/10.1016/j.eswa.2008.11.023<br /> <br /> ;Sanin, C., Toro, C., Vaquero, J., Szczerbicki, E. Posada, J. <br /> :Implementing Decisional DNA in Industrial Maintenance by a knowledge SOUPA Extension <br /> : Systems Science, Vol. 33 No. 2:61-68 <br /> : ISSN: 0137-1223, Wroclaw, Poland 2008.<br /> <br /> ;Toro, C ,Sanin, C. / Szczerbicki, E. / Posada, J. <br /> : Reflexive Ontologies: Enhancing Ontologies with self-contained queries <br /> :Cybernetics and Systems: An International Journal, 39: 1–19 <br /> :ISSN: 0196-9722 print, 1087-6553 online, USA 2008.<br /> : ISI JCR 2006 0.964<br /> <br /> ;Eloy Irigoyen, Miguel Pinzolas<br /> :Numerical bounds to assure initial local stability of NARX multilayer perceptrons and radial basis functions<br /> :Neurocomputing, 72; 539-547<br /> :ISSN: 0925-2312<br /> :ISI JCR 2008 1.745<br /> :http://dx.doi.org/10.1016/j.neucom.2007.11.018<br /> <br /> ==2007==<br /> <br /> ;Maite Garcia-Sebastián, Elsa Fernandez, M. Graña, Francisco J. Torrealdea<br /> :''A parametric gradient descent MRI intensity inhomogeneity correction algorithm'' (pdf [http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6V15-4NT84HV-2&amp;_user=984461&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_searchStrId=940574918&amp;_rerunOrigin=google&amp;_acct=C000049823&amp;_version=1&amp;_urlVersion=0&amp;_userid=984461&amp;md5=112b05574e5ac5481a15297bb531da15])<br /> :Pattern Recognition Letters 28(13):1657-1666<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005, 2006, 2007) 0.552, 1.138 0.952 0.853<br /> <br /> ;Ivan Villaverde, Alicia d'Anjou, M. Graña<br /> :''Morphological Neural Networks and Vision Based Simultaneous Localization and Mapping''<br /> :Integrated Computer-Aided Engineering 14(4):355-363<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.444, JCR 2006 0.236, JCR 2007 0.113, JCR 2008 0.617<br /> <br /> ;Toro, C. / Posada, J / Oyarzun, J / Falcón, J<br /> : Supporting the CAD Structural Design Process with knowledge based tools, <br /> :Journal of Cybernetics and systems, <br /> :ISBN 1087-6553 (electronic) 0196-9722 (paper), Taylor and Francis publishers, 2007.<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.681, JCR 2006 0.964, JCR 2007 0.655<br /> <br /> ;Sanin, C. / Szczerbicki, E. / Toro, C. <br /> : An OWL Ontology of Set of Experience Knowledge Structure <br /> : Journal of Universal Computer Science , Volume 13, number 2, pages 209-223, 2007<br /> <br /> ; EKAITZ ZULUETA GUERRERO; PEDRO MARIA IRIONDO BENGOA; JOSE MANUEL LOPEZ GUEDE; Ander Etxeberria <br /> : Entropy Analysis for Stochastic System Control<br /> : INTERNATIONAL JOURNAL OF FACTORY AUTOMATION, ROBOTICS AND SOFT COMPUTING 2(2): 88-92<br /> <br /> ==2006==<br /> <br /> ;F.J. Torrealdea, A. d'Anjou, Manuel Graña, C. Sarasola<br /> :''Energy aspects of the synchronization of model neurons''<br /> : Physical Review E 74:011905<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2006 2.438<br /> <br /> ;Toro, C. Posada, J Wundrak, S Stork, A<br /> : Improving Virtual Reality Applications in CAD through Semantics,<br /> :The International Journal of Virtual Reality, 2006, volume 5, Number 4, pages 39-46<br /> <br /> ;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br /> : Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br /> : Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br /> <br /> ==2005==<br /> <br /> ; Gurutze Arzamendi, Alicia d'Anjou, Manuel Graña, José R. Leiza, José M. Asua<br /> : ''Model reduction in emulsion polymerization using hybrid first principles/artificial neural networks models 2a Long Chain Branching Kinetics''<br /> : Macromolecular Theory and Simulations 14:125-132<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 1.544<br /> <br /> ; C. Sarasola, A. d'Anjou, F.J. Torrealdea, Manuel Graña<br /> : ''Minimization of the energy flow in the synchronization of nonindentical chaotic systems''<br /> : Physical Review E 72:026223<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.418<br /> <br /> ;C. Sarasola, , A. d'Anjou, F. J. Torrealdea and A. Moujahid<br /> : ''Energy-like functions for some dissipative chaotic systems.'' <br /> : Int. J. Bifurcation and Chaos 15(8), 2507-2521<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.845<br /> <br /> ; A. d'Anjou, C. Sarasola, , F. J. Torrealdea. <br /> : ''On the characterization of different synchronization stages by energy considerations.''<br /> : Journal of Physics: Conference Series, 23, 238–251<br /> <br /> ;Blanca Cases and Manuel Alfonseca<br /> :Towards a proof of the decidability of the momentary stagnation of the growth function of D0L systems<br /> :Theoretical Computer Science, Volume 341, Issues 1-3, 5 September 2005, Pages 247-262<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br /> <br /> ;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br /> : Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br /> : Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br /> <br /> ==2004==<br /> <br /> ; M. Graña, J. Gallego, C. Hernandez<br /> : ''A Single Individual Evolutionary Strategy for Endmember Search in Hyperspectral Images.''<br /> :Information Sciences, Int. J 161(3-4):181-197<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br /> <br /> ;B. Raducanu, Manuel Graña, F.X. Albizuri, A. d'Anjou<br /> : ''A Probabilistic Hit-and-Miss Tranform for Face Localization''<br /> :Pattern Análisis and Applications 7:117-127<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.803<br /> <br /> ;Elsa Fernandez, Manuel Graña, Jesús Ruiz-Cabello<br /> : ''On a Gradient Based Evolution Strategie For Parametric Illumination Correction''<br /> :Electronics Letters 40(9):531-532<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.968<br /> <br /> ;Cecilia Sarasola, Francisco J. Torrealdea, Alicia d'Anjou, A. Moujahid, Manuel Graña<br /> : ''Energy balance in feedback synchronization of chaotic systems''<br /> : Physical review E 69-011606<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004 2.352<br /> <br /> ==2003==<br /> <br /> ; F. Xabier Albizuri, Manuel Graña, Bogdan Raducanu <br /> :Statistical transmission delay guarantee for nonreal-time traffic multiplexed with real-time traffic<br /> :Computer Communications 26 (2003) 1365–1375<br /> : Indicadores de calidad, JCR (2005) 0.556 (2009) 0.933<br /> <br /> ; M. Graña, P. Sussner, G.X. Ritter<br /> : [[media:Grana-sussner-ritter-2003-mathware.pdf|Innovative Applications of Associative Morphological Memories]]<br /> : Mathware &amp; Soft Computing 10(3):155-168<br /> : [http://ic.ugr.es/Mathware/index.php/Mathware/issue/view/6 journal web page]<br /> <br /> ;A. d'Anjou, F. J. Torrealdea, J.R. Leiza, J.M. Asua, G. Arzamendi <br /> : ''Model reduction in emulsion polymerization using Hybrid First-Principles/Artificial Neural Networks models''<br /> : Macromolecular Theory and Simulation 12:42-56<br /> : indicadores de calidad, JCR (2005) 1.544 (2006) 1.073 (2007) 1.792 (2008) 1.912 (2009) 1.683<br /> <br /> ; C. Sarasola, F.J. Torrealdea, A. d'Anjou, A. Moujahid and M. Graña<br /> : ''Feedback synchronization of chaotic systems''<br /> : Int. J. Bifurcation and Chaos 13(1):177-191<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.014<br /> <br /> ;B. Raducanu, M. Graña, F.X. Albizuri<br /> : ''Morphological Scale Spaces and Associative Morphological Memories: Results on Robustness and Practical Applications''<br /> : Journal of Mathematical Imaging and Vision 9(2):113-131<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.617,2.197<br /> <br /> ;C. Sarasola, F.J. Torrealdea, A. d’Anjou, A. Moujahid, M. Graña,<br /> : ''Nonzero error synchronization of chaotic systems via dynamic coupling''<br /> : Physica D 177(1-4):39-49<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2002,2003:1.144,1.014<br /> <br /> ;R. Perez de Alejo, J. Ruiz-Cabello, M. Cortijo, I. Rodriguez, I. Echave, J. Regadera, J. Arrazola, P. Avilés, P. Barreiro, D. Gargallo, M. Graña<br /> : ''Computer- Assisted Enhanced Volumetric Segmentation Magnetic Resonance Imaging Data Using a Mixture of Artificial Neural Networks''<br /> : Magnetic Resonance Imaging 21:901-912<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.420<br /> <br /> ; JOSE MARIA GONZALEZ DE DURANA GARCIA; TEODORO RICO PASTRANA; EKAITZ ZULUETA GUERRERO<br /> : HYBRID MODELING OF OPEN LOOP DC-DC CONVERTERS.<br /> : FACING 11(2): 41--47<br /> <br /> ==2002==<br /> <br /> ;C. Sarasola, F.J. Torrealdea, A. d'Anjou, M. Graña<br /> : ''Cost of synchronizing different chaotic systems''<br /> : Mathematics and Computers in Simulation 58:309-327<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005): 0.253,0.554<br /> <br /> ; Jesús Ruiz-Cabello, Javier Regadera, Carmen Santisteban, Manuel Graña, Rigoberto Pérez de Alejo, Imanol Echave, Pablo Avilés, Ignacio Rodriguez, Inmaculada Santos, Domingo Gargallo, Manuel Cortijo<br /> : ''Monitoring actute inflammatory processes in the mouse muscle by MR imaging and spectroscopy: a comparision with pathological results''<br /> : NMR in Biomedicine 15:204-214<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2002,2005) 2.160, 2.469<br /> <br /> ==2001==<br /> <br /> ; B. Raducanu, M. Graña, F.X. Albizuri, A. D'Anjou<br /> : ''Face localization based on the morphological multiscale fingerprints''<br /> : Pattern Recognition Letters 22:359-371<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.552, 1.138<br /> <br /> ;A.I. Gonzalez, M. Graña, J. Ruiz-Cabello, A. d'Anjou<br /> : ''Experimental results of an Evolution-based Adaptation Strategy for VQ Image Filtering'' [[media:IS2001_Evolution_VQfilter.pdf|pdf]]<br /> : Information Sciences, Int. J. 133 (3-4):249-266<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br /> <br /> ; M.C. Hernandez, F.X Albizuri, A. d'Anjou, M. Graña, F.J. Torrealdea<br /> : ''Efficient solution of MAX-SAT and SAT via higher order Boltzmann Machines''<br /> : Investigacion Operacional 22(1):67-78<br /> :Indicadores de calidad (Índice de Impacto o similares): <br /> :Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br /> <br /> ;Israel Rebollo, Manuel Graña y Carmen Hernández<br /> :APLICACION DE ALGORITMOS ESTOCASTICOS DE OPTIMIZACION AL PROBLEMA DE LA DISPOSICION DE OBJETOS NO-CONVEXOS. [[http://rev-inv-ope.univ-paris1.fr/files/22201/IO-22201-11.pdf]]<br /> : Investigacion Operacional 22(2):184-192<br /> :Indicadores de calidad (Índice de Impacto o similares): <br /> :Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br /> <br /> ; A. d'Anjou,C. Sarasola, F.J. Torrealdea, R. Orduna, M. Graña<br /> : ''Parameter adaptive identical synchronization disclosing Lorenz chaotic mask''<br /> : Physical Review E E63-046213<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.202, (JCR 2002 2.397)<br /> <br /> ; S. O. Anchorena, B. Cases<br /> : ''Modeling Chaotic Series by Simple Eco-Grammar Systems with Reproduction, Death and Maturation of Agents.''<br /> : Grammars, vol. 6 num. 3, pp. 155-168 (2003)<br /> : EE: http://www.springerlink.com/content/n68251124147700r/<br /> <br /> ==2000==<br /> <br /> ;A.I. Gonzalez, M. Graña, F.X. Albizuri, A. D'Anjou, F.J. Torrealdea<br /> : A Near Real-Time Evolution-based Adaptation Strategy for Dynamic Color Quantization of Image Sequences [[media:IS2000_Evolution_CQ_image_sequence.pdf|pdf]]<br /> : Information Sciences, Int. J. 122:161-183<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.447, 0.723<br /> <br /> ;J. Ruiz Cabello, I Rodriguez, P. Avilés, M. Graña, I. Echave, J. Regadera, D. Gargallo, M. Cortijo<br /> : Magnetic resonance imaging to monitor the biology of inflammation<br /> : European Biophysics Journal 29(4-5):363<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005) 1.917,1.811 <br /> :ISSN: 0175-7571<br /> <br /> ;I Rodriguez, M. Graña, I. Echave, P. Barreiro, M. Cortijo, J. Ruiz Cabello<br /> : MR image processing using neural networks and vector quantization<br /> : Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA) 11 (supl. 1):143<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.836<br /> <br /> ;F.X. Albizuri, A.I. Gonzalez, M. Graña, A. D'Anjou<br /> : ''Neural learning for distributions on categorical data''[[media:Albizuri2000_Neural_learning.pdf|pdf]]<br /> : Neurocomputing 34:1-9<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.534, 0.790<br /> <br /> ==1999==<br /> <br /> ;J.A. Lozano, P. Larrañaga, M. Graña, F.X. ALbizuri<br /> : ''Genetic Algorithms: bridging the convergence gap''<br /> : Theoretical Computer Science 229:11-22<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br /> <br /> ;A.I. Gonzalez, M. Graña, M. Cottrell<br /> : ''Basic competitive neural networks as adaptive mechanisms for non-stationary color quantization'' [[media:Ai-gonzalez-neural-computing-appl-1999.pdf|pdf]]<br /> : Neural Computing and Applications 8: 347-367<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.403<br /> <br /> ==1998==<br /> <br /> ; A. I. Gonzalez, M. Graña<br /> : ''Una estrategia evolutiva para clustering no estacionario''<br /> : Inteligencia Artificial, Revista Iberoamericana de Inteligencia Artificial, 2(5): 68-73<br /> <br /> ;A. I. Gonzalez, M. Graña, A. D'Anjou, F.X. Albizuri, F.J Torrealdea<br /> : ''A comparison of experimental results with a Evolution Strategy and Competitive Neural Networks for near real-time Color Quantization of image sequences'' [[media:AppInt1998_Evol_CNN_CQ_sequences.pdf|pdf]]<br /> : Applied Intelligence 8 (1): 43-51<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.9<br /> <br /> ==1997==<br /> <br /> ; M. Graña, A. D´Anjou, F.J. Torrealdea<br /> : User expectations for the intelligent blackboard [[media:M-grana-displays-1997.pdf|pdf]]<br /> : Displays 17 (3-4): 143-146<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor: 0.947, JCR 2007 1.179<br /> <br /> ; A. I. Gonzalez, M. Graña, A. D´Anjou, F.X. Albizuri, M. Cottrell<br /> : A sensitivity analysis of the Self Organizing Map as an Adaptive One-pass Non-stationary Clustering algorithm: the case of Color Quantization of image sequences [[media:NPL1997_SOM_onepass_nonstat_clustering.pdf|pdf]]<br /> : Neural Processing Letters 6: 77-89<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.701<br /> <br /> ; F.X. Albizuri, A. D'Anjou, M. Graña, P. Larrañaga<br /> : Structure of the high-order Boltzmann Machine from Independence Maps<br /> : IEEE trans. Neural Networks 8 (6): 1351-1358<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.205<br /> <br /> ; M. Graña, A. D'Anjou , F.X. Albizuri, M. Hernandez, F. J. Torrealdea, A.I. Gonzalez<br /> : Experiments of fast learning with High Order Boltzmann Machines [[media:Grana-HOBM-appl-int-1997.pdf|pdf]]<br /> : Applied Intelligence 7 (4): 287-303<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.569<br /> <br /> ==1996==<br /> <br /> ; F.X. Albizuri, A. D'Anjou , M. Graña,J.A. Lozano<br /> : Convergence properties of High-Order Boltzmann Machines<br /> : Neural Networks 9(9): 1561-1567<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 1.665<br /> <br /> ;M. Graña, A. D'Anjou , F.X. Albizuri, J.A. Lozano, P. Larrañaga, Y. Yurramendi, M. Hernandez, J.L. Jimenez, F. J. Torrealdea, M. Poza, A.I. Gonzalez<br /> : Experimentos de aprendizaje con Máquinas de Boltzmann de alto orden [[media:Inf-y-automatica-exp-HOBM-96.pdf|draft]]<br /> : Informática y Automática 29(4): 42-57<br /> <br /> ==1995==<br /> <br /> ;A. I. González , M. Graña - A. D'Anjou<br /> : An analysis of the GLVQ algorithm [[media:IEEENN95_analysis_GLVQ.pdf|pdf]]<br /> : IEEE Transactions on Neural Netwoks 6 (4): 1012-1016<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br /> <br /> ; F. X. Albizuri - A. D'Anjou - M. Graña - F. J. Torrealdea - M. C. Hernández<br /> : The high order Boltzmann machine: learned distribution and topology<br /> : IEEE Transactions. on Neural Networks 6 (3): 767-770<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br /> <br /> ; M. Graña - A. D'Anjou - A. I. González - F. X. Albizuri - M. Cottrell<br /> : Competitive stochastic neural networks for vector quantization of images [[media:Neurocomputing95_CSNN_VQ.pdf|pdf]]<br /> : Neurocomputing 7: 187-195<br /> : Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.790<br /> <br /> ==1993==<br /> <br /> ;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br /> : Solving satisfiability via Boltzmann machines [[media:Danjou-pami-1993.pdf|pdf]]<br /> : IEEE Transactions on pattern analysis and machine intelligence, 15:514-521<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.923<br /> <br /> ==1992==<br /> <br /> ;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br /> : Máquinas de Boltzmann para la resolución del problema de la satisfacibilidad en el cálculo proposicional<br /> : Revista Española de Informática y Automática 24: 40-49<br /> <br /> ==1987==<br /> <br /> ;Luis M. Alonso - Manuel Graña<br /> : Formal techniques and concurrent systems<br /> : Communications ACM 30: 752-753<br /> Indicadores de calidad (Índice de Impacto o similares): ISI JCR (2008) 2.646<br /> <br /> ==1986==<br /> <br /> ;Manuel Graña - Fco. Javier Torrealdea<br /> : Hierarchically structured Systems [[media:Grana-torrealdaea-1986.zip|scan]] [[media:Grana-torrealdea-1986.pdf|scan compressed]]<br /> : European Journal of Operational Research 25:20-26<br /> Indicadores de calidad ISI JCR: (2008) 1.627, <br /> <br /> ; Fco. Javier Torrealdea - Manuel Graña - Fernando Ferreres<br /> : A comparison between stochastic and deterministic simulation<br /> : Advances in Modelling and Simulation (AMSE press) 5:15-32<br /> :Indicadores de calidad (Índice de Impacto o similares):<br /> <br /> ; T. Alvarez - J. J. Dolado - M. Graña - I. Sukia - F. J. Torrealdea<br /> : Una versión de GPSS<br /> : Revista Española de Informática y Automática 19:45-59<br /> : Indicadores de calidad (Índice de Impacto o similares):<br /> <br /> ==1984==<br /> <br /> ;Fco. Javier Torrealdea - Manuel Graña<br /> : Some ideas for a history dynamics model.<br /> : Dynamica 10: 103-106 [http://www.systemdynamics.org/dynamica/articles/102/5.pdf]<br /> :Originalmente editada por el Bradford System Dynamics group fue posteriormente asumida por la System Dynamics Society y convertida en la actual The International Journal of System Dynamics, manteniendo los fondos bibliograficos asociados a Dynamica.<br /> : [http://www.systemdynamics.org/conferences/1983/proceed/parallel-vol2/torre913.pdf la publicación en la conferencia de System Dynamics que dió lugar al artículo]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18107 2015-09-15T20:33:36Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18105 2015-09-15T20:32:18Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae.<br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=18103 2015-09-15T20:31:52Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * October/2015 - current - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechst der Isar''', Munich, Germany.<br /> :multi-modal brain PET-MRI processing and classification for detection of dementiae.<br /> <br /> <br /> * January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland.<br /> :collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> <br /> * December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.<br /> <br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Actividades_de_difusi%C3%B3n_de_la_ciencia_y_la_tecnolog%C3%AD%C2%ADa&diff=17776 2015-05-12T08:28:19Z

<p>Alexsavio: /* Actividades de Divulgación científica */</p> <hr /> <div>== Edición de revistas ==<br /> <br /> ===Miembro de comite editorial ===<br /> <br /> * Manuel Graña<br /> ** Journal of Mathematical Imaging and Vision, (Ed. Springer Verlag)<br /> ** Information Fusion, Elsevier<br /> ** Computational intelligence and neuroscience, Hindawi [http://www.hindawi.com/journals/cin/]<br /> ** Intelligent decision technologies, IOS Press [http://content.iospress.com/journals/intelligent-decision-technologies]<br /> <br /> === [[journal-reviews | Review de artículos para revistas]] ===<br /> <br /> <br /> <br /> <br /> == Organización de congresos ==<br /> <br /> === Congresos internacionales ===<br /> <br /> * EuroPython 2015 [http://ep2015.europython.eu/]<br /> * InMed 2014, international conference on Innovation in Medicine and healthcare [http://inmed-14.innovationkt.org/] [[media:Chairs-Innovation-In-Medicine-and-Healthcare-2014-Organisation.pdf|Chairs]], [[media:Home-Page-Innovation-In-Medicine-and-Healthcare-2014-Welcome.pdf|home page]]<br /> <br /> * Special session on Lattice Computing en WCCI 2014 [http://ieee-cis.blogspot.gr/2013/11/call-for-papers-wcci-2014-special_12.html]<br /> <br /> * Special session on Hibrid Computational Intelligence and Lattice computing for image and signal processing, HAIS 2012, Salamanca, Spain [http://hais.usal.es/] [[Imagen:Cfp-special-session-HAIS-2012-lattice-computing-and-applications.png|100px|thumb]]<br /> <br /> *[http://kes2012.kesinternational.org/ KES 2012 16th International Conference on Knowledge-Based and Intelligent Information &amp; Engineering Systems]<br /> <br /> ** [[media:Programme KES 2012, version 2 agosto.pdf|program]]<br /> **[http://booksonline.iospress.nl/Content/View.aspx?piid=31939 online proceedings]<br /> <br /> * [http://hais.pwr.wroc.pl/ss10.htm HAIS 2011 Special Session on HYBRID INTELLIGENT APPROACHES IN COOPERATIVE MULTI-ROBOT SYSTEMS]<br /> <br /> * [[KES 2011 Recent trends in Knowledge Engineering, Smart Systems and their applications, C. Sanin, C. Toro]]<br /> <br /> * [http://www.ehu.es/ccwintco/hais2010/ HAIS 2010] <br /> ** [[HAIS2010 | Detailed program and slides]] <br /> ** [http://www.ehu.es/ccwintco/index.php/HAIS-2010-press-releases Press releases]<br /> <br /> * [http://paams.usal.es/index.php?option=com_content&amp;task=view&amp;id=26&amp;Itemid=32 Systems, Man, &amp; Cybernetics Workshop. : SMC-Workshop.-IEEE.-SPANISH CHAPTER]<br /> <br /> * [http://gicap.ubu.es/ideal2009/spsessions/spsessionslist.shtml IDEAL 2009 special session on Intelligent Computational Techniques in Medical Image Processing]<br /> <br /> *[[IWINAC2009-multirobot | IWINAC special session on Bio-inspired computation in cooperative multi-robot systems]]<br /> <br /> * [[KES2009|Special sessions KES 2009]]<br /> <br /> *6th International Conference on Photonics, Networking and Computing, 11th JCIS, [http://www.jcis.org.cn/tracks.html]<br /> <br /> * CLA2008 Workshop on Lattice Based Modelling [[http://iiu.teikav.edu.gr/users/vgkabs/CLA2008.htm]], los artículos están en [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=163]<br /> <br /> *[[HAIS2008-multirobot | HAIS 2008 special session on Hybrid Intelligent Systems for Multi-robot and multi-agent systems]]<br /> <br /> * [[ICONIP 2008 Special Session | ICONIP 2008 Special Session on Neural Information Processing in Cooperative Multi-Robot Systems]]<br /> <br /> * [[KES2008|Special sessions KES 2008]]<br /> <br /> * 9th International Work-Conference on Artificial Neural Networks (IWANN'2007) - Computational and Ambient Intelligence [http://iwann2005.ugr.es/2007/index.html]<br /> <br /> * [[media:JCIS2005.zip | Joint Conference on Information Sciences 2005, Salt Lake City, July 2005]]<br /> <br /> === Congresos nacionales y locales ===<br /> * [[media:2011-11-22-cartel-jornadas-hiperespectrales-ferrol.pdf|1a Jornada de Imagenes Hiperespectrales y Computación de Altas Prestaciones, Ferrol, 22 nov. 2011]]<br /> ** [[media:Presentacion-GIC-jornada-hiperespectrales-ferrol-2011-11-22.pdf|Presentación del Grupo de Inteligencia Computacional]]<br /> <br /> * [[2-9-10-11-december-2009|Workshop on Computational Intelligence Trends and Methologies]]<br /> <br /> * [[jic09|Terceras Jornadas de Inteligencia Computacional (JIC'09)]]<br /> <br /> *[[Vicomtech-GIC-workshop-09-05-27| Workshop on Knowledge Engineering, Visualization and Interaction in Computer Aided Design and other Industrial Applications]]<br /> <br /> * [[jic08|Segundas Jornadas de Inteligencia Computacional (JIC'08)]]<br /> <br /> * [[jic07|Primeras Jornadas de Inteligencia Computacional (JIC'07)]]<br /> <br /> === [[participacion-comites-de-programa | Participación en comités de programa]] ===<br /> <br /> ==Conferencias y charlas ==<br /> ; Pedro Alberto González <br /> : PRIVACIDAD Y SEGURIDAD DE LA INFORMACIÓN<br /> : Agencia Vasca de Protección de Datos<br /> : Día 17 de junio, martes, a las 16:00 horas , Lugar: sala de juntas, facultad de informática<br /> <br /> ; Manuel Graña<br /> : Lattice Computing: Computational Intelligence based on Lattice Theory<br /> : University of Hong Kong, Invited Talk at the Computer Science Department, June 5, 2008<br /> <br /> ; Dominik Maximilián Ramík<br /> : A Real-time Approach to Humanoid Robot Learning of Objects through Visual Saliency [[media:DOMINIK.zip |(slides)]]<br /> : Laboratoire Images, Signaux et Systèmes Intelligents (LISSI / EA 3956), Université Paris-Est, Institut Universitaire de Technologie de Sénart<br /> : At San Sebastian, UPV/EHU, Faculty of Informatics, 24-jun-2011<br /> <br /> ; Wang Ting <br /> : Multi Agent Robots Navigating in the Unknown Environment [[media:TING.zip |(Slides)]]<br /> : Laboratoire Images, Signaux et Systèmes Intelligents (LISSI / EA 3956), Université Paris-Est, Institut Universitaire de Technologie de Sénart<br /> : At San Sebastian, UPV/EHU, Faculty of Informatics, 24-jun-2011<br /> <br /> == Actividades de Divulgación científica ==<br /> <br /> *[[10-12-11-2011|Semana de la Ciencia 2011]]<br /> <br /> *[[08-11-2011|I Jornada Universitaria de Informática Médica]]<br /> <br /> *[[11-13-11-2010|Semana de la Ciencia 2010]]<br /> <br /> *[[12-14-11-2009|Semana de la Ciencia 2009]]<br /> <br /> * [[Semana de la ciencia 2008]]<br /> <br /> * [[28-09-07|Researcher's Night (Septiembre 28, 2007)]]<br /> <br /> * [[08-11-07|Semana de la Ciencia, (Noviembre 8 y 9, 2007)]]<br /> <br /> * [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Jornada de sensibilización sobre robótica con alumnos de 4 curso de Orixe Ikastola, [https://www.youtube.com/playlist?list=PL_t7JYzT5r0-UGv1f6JZWpGq1JUW7qpYn]<br /> <br /> * Jornada con ASPANOGI - Drone Eguna 2015.3.14 [https://www.youtube.com/watch?v=oJM3hBTdJtM] [https://www.youtube.com/watch?v=IKdvU_fRYJM]<br /> <br /> * Software Carpentry para investigadores organizado junto con el Centro de Física de Materiales (CSIC-UPV/EHU) [http://luispedro.github.io/2015-06-15-cfmehu/]<br /> <br /> == Recortes de prensa ==<br /> *[[HAIS-2010-press-releases]]<br /> *[[Diario Vasco 11-Marzo-2008]]<br /> *[http://www.ehu.es/p055-8898/es/contenidos/noticia/tesis_interpre_habla_10032008/es_tesis/tesis_interpret_habla_10042008.html La web de la UPV/EHU]<br /> * [[Elhuyar-Marzo-2008]]<br /> *[[Gara 11-marzo-2008]]<br /> *[[Berria 11-Marzo-2008]]<br /> <br /> == Participación en sociedades científicas y tecnológicas ==<br /> * Miembros del Capítulo español de la sociedad System, Man &amp; Cybernetics [http://www.ieee-smc.es/main/index.shtml]<br /> <br /> * [[elecciones-RAS-2008 | Comite electoral del capítulo español del IEEE Robotics and Automation Society]]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Actividades_de_difusi%C3%B3n_de_la_ciencia_y_la_tecnolog%C3%AD%C2%ADa&diff=17770 2015-05-11T11:34:58Z

<p>Alexsavio: /* Actividades de Divulgación científica */</p> <hr /> <div>== Edición de revistas ==<br /> <br /> ===Miembro de comite editorial ===<br /> <br /> * Manuel Graña<br /> ** Journal of Mathematical Imaging and Vision, (Ed. Springer Verlag)<br /> ** Information Fusion, Elsevier<br /> <br /> === [[journal-reviews | Review de artículos para revistas]] ===<br /> <br /> <br /> <br /> <br /> == Organización de congresos ==<br /> <br /> === Congresos internacionales ===<br /> <br /> * EuroPython 2015 [http://ep2015.europython.eu/]<br /> * InMed 2014, international conference on Innovation in Medicine and healthcare [http://inmed-14.innovationkt.org/] [[media:Chairs-Innovation-In-Medicine-and-Healthcare-2014-Organisation.pdf|Chairs]], [[media:Home-Page-Innovation-In-Medicine-and-Healthcare-2014-Welcome.pdf|home page]]<br /> <br /> * Special session on Lattice Computing en WCCI 2014 [http://ieee-cis.blogspot.gr/2013/11/call-for-papers-wcci-2014-special_12.html]<br /> <br /> * Special session on Hibrid Computational Intelligence and Lattice computing for image and signal processing, HAIS 2012, Salamanca, Spain [http://hais.usal.es/] [[Imagen:Cfp-special-session-HAIS-2012-lattice-computing-and-applications.png|100px|thumb]]<br /> <br /> *[http://kes2012.kesinternational.org/ KES 2012 16th International Conference on Knowledge-Based and Intelligent Information &amp; Engineering Systems]<br /> <br /> ** [[media:Programme KES 2012, version 2 agosto.pdf|program]]<br /> **[http://booksonline.iospress.nl/Content/View.aspx?piid=31939 online proceedings]<br /> <br /> * [http://hais.pwr.wroc.pl/ss10.htm HAIS 2011 Special Session on HYBRID INTELLIGENT APPROACHES IN COOPERATIVE MULTI-ROBOT SYSTEMS]<br /> <br /> * [[KES 2011 Recent trends in Knowledge Engineering, Smart Systems and their applications, C. Sanin, C. Toro]]<br /> <br /> * [http://www.ehu.es/ccwintco/hais2010/ HAIS 2010] <br /> ** [[HAIS2010 | Detailed program and slides]] <br /> ** [http://www.ehu.es/ccwintco/index.php/HAIS-2010-press-releases Press releases]<br /> <br /> * [http://paams.usal.es/index.php?option=com_content&amp;task=view&amp;id=26&amp;Itemid=32 Systems, Man, &amp; Cybernetics Workshop. : SMC-Workshop.-IEEE.-SPANISH CHAPTER]<br /> <br /> * [http://gicap.ubu.es/ideal2009/spsessions/spsessionslist.shtml IDEAL 2009 special session on Intelligent Computational Techniques in Medical Image Processing]<br /> <br /> *[[IWINAC2009-multirobot | IWINAC special session on Bio-inspired computation in cooperative multi-robot systems]]<br /> <br /> * [[KES2009|Special sessions KES 2009]]<br /> <br /> *6th International Conference on Photonics, Networking and Computing, 11th JCIS, [http://www.jcis.org.cn/tracks.html]<br /> <br /> * CLA2008 Workshop on Lattice Based Modelling [[http://iiu.teikav.edu.gr/users/vgkabs/CLA2008.htm]], los artículos están en [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=163]<br /> <br /> *[[HAIS2008-multirobot | HAIS 2008 special session on Hybrid Intelligent Systems for Multi-robot and multi-agent systems]]<br /> <br /> * [[ICONIP 2008 Special Session | ICONIP 2008 Special Session on Neural Information Processing in Cooperative Multi-Robot Systems]]<br /> <br /> * [[KES2008|Special sessions KES 2008]]<br /> <br /> * 9th International Work-Conference on Artificial Neural Networks (IWANN'2007) - Computational and Ambient Intelligence [http://iwann2005.ugr.es/2007/index.html]<br /> <br /> * [[media:JCIS2005.zip | Joint Conference on Information Sciences 2005, Salt Lake City, July 2005]]<br /> <br /> === Congresos nacionales y locales ===<br /> * [[media:2011-11-22-cartel-jornadas-hiperespectrales-ferrol.pdf|1a Jornada de Imagenes Hiperespectrales y Computación de Altas Prestaciones, Ferrol, 22 nov. 2011]]<br /> ** [[media:Presentacion-GIC-jornada-hiperespectrales-ferrol-2011-11-22.pdf|Presentación del Grupo de Inteligencia Computacional]]<br /> <br /> * [[2-9-10-11-december-2009|Workshop on Computational Intelligence Trends and Methologies]]<br /> <br /> * [[jic09|Terceras Jornadas de Inteligencia Computacional (JIC'09)]]<br /> <br /> *[[Vicomtech-GIC-workshop-09-05-27| Workshop on Knowledge Engineering, Visualization and Interaction in Computer Aided Design and other Industrial Applications]]<br /> <br /> * [[jic08|Segundas Jornadas de Inteligencia Computacional (JIC'08)]]<br /> <br /> * [[jic07|Primeras Jornadas de Inteligencia Computacional (JIC'07)]]<br /> <br /> === [[participacion-comites-de-programa | Participación en comités de programa]] ===<br /> <br /> ==Conferencias y charlas ==<br /> ; Pedro Alberto González <br /> : PRIVACIDAD Y SEGURIDAD DE LA INFORMACIÓN<br /> : Agencia Vasca de Protección de Datos<br /> : Día 17 de junio, martes, a las 16:00 horas , Lugar: sala de juntas, facultad de informática<br /> <br /> ; Manuel Graña<br /> : Lattice Computing: Computational Intelligence based on Lattice Theory<br /> : University of Hong Kong, Invited Talk at the Computer Science Department, June 5, 2008<br /> <br /> ; Dominik Maximilián Ramík<br /> : A Real-time Approach to Humanoid Robot Learning of Objects through Visual Saliency [[media:DOMINIK.zip |(slides)]]<br /> : Laboratoire Images, Signaux et Systèmes Intelligents (LISSI / EA 3956), Université Paris-Est, Institut Universitaire de Technologie de Sénart<br /> : At San Sebastian, UPV/EHU, Faculty of Informatics, 24-jun-2011<br /> <br /> ; Wang Ting <br /> : Multi Agent Robots Navigating in the Unknown Environment [[media:TING.zip |(Slides)]]<br /> : Laboratoire Images, Signaux et Systèmes Intelligents (LISSI / EA 3956), Université Paris-Est, Institut Universitaire de Technologie de Sénart<br /> : At San Sebastian, UPV/EHU, Faculty of Informatics, 24-jun-2011<br /> <br /> == Actividades de Divulgación científica ==<br /> <br /> *[[10-12-11-2011|Semana de la Ciencia 2011]]<br /> <br /> *[[08-11-2011|I Jornada Universitaria de Informática Médica]]<br /> <br /> *[[11-13-11-2010|Semana de la Ciencia 2010]]<br /> <br /> *[[12-14-11-2009|Semana de la Ciencia 2009]]<br /> <br /> * [[Semana de la ciencia 2008]]<br /> <br /> * [[28-09-07|Researcher's Night (Septiembre 28, 2007)]]<br /> <br /> * [[08-11-07|Semana de la Ciencia, (Noviembre 8 y 9, 2007)]]<br /> <br /> * [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Jornada de sensibilización sobre robótica con alumnos de 4 curso de Orixe Ikastola, [https://www.youtube.com/playlist?list=PL_t7JYzT5r0-UGv1f6JZWpGq1JUW7qpYn]<br /> <br /> * Jornada con ASPANOGI - Drone Eguna 2015.3.14 [https://www.youtube.com/watch?v=oJM3hBTdJtM] [https://www.youtube.com/watch?v=IKdvU_fRYJM]<br /> <br /> * Software Carpentry para investigadores organizado en conjunto con el Materials Physics Center [http://luispedro.github.io/2015-06-15-cfmehu/]<br /> <br /> == Recortes de prensa ==<br /> *[[HAIS-2010-press-releases]]<br /> *[[Diario Vasco 11-Marzo-2008]]<br /> *[http://www.ehu.es/p055-8898/es/contenidos/noticia/tesis_interpre_habla_10032008/es_tesis/tesis_interpret_habla_10042008.html La web de la UPV/EHU]<br /> * [[Elhuyar-Marzo-2008]]<br /> *[[Gara 11-marzo-2008]]<br /> *[[Berria 11-Marzo-2008]]<br /> <br /> == Participación en sociedades científicas y tecnológicas ==<br /> * Miembros del Capítulo español de la sociedad System, Man &amp; Cybernetics [http://www.ieee-smc.es/main/index.shtml]<br /> <br /> * [[elecciones-RAS-2008 | Comite electoral del capítulo español del IEEE Robotics and Automation Society]]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=17524 2015-01-31T09:44:37Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=17522 2015-01-31T09:40:28Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1]<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=17520 2015-01-31T09:26:05Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)<br /> <br /> :- Darya Chyhzhyk, Alexandre Savio, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM'', Neural Networks (Q1 CSAI: 2.076) (to be accepted)<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=17518 2015-01-31T09:15:44Z

<p>Alexsavio: /* Software */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [https://github.com/neurita Neurita free software packages]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015) <br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=17474 2015-01-13T17:29:07Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2015<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'', Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015) <br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Archivo:Logo_pyss.png&diff=17098 2014-09-16T20:51:23Z

<p>Alexsavio: </p> <hr /> <div></div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16887 2014-07-12T19:22:07Z

<p>Alexsavio: Deshecha la revisión 16881 de Alexsavio (disc.)</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Alexsavio_own_bibLatex&diff=16885 2014-07-12T19:20:35Z

<p>Alexsavio: </p> <hr /> <div>&lt;nowiki&gt;<br /> <br /> @incollection{savio_classification_2009,<br /> title = {Classification Results of Artificial Neural Networks for Alzheimer’s Disease Detection},<br /> url = {http://dx.doi.org/10.1007/978-3-642-04394-9_78},<br /> abstract = {Detection of Alzheimer’s disease on brain Magnetic Resonance Imaging ({MRI}) is a highly sought goal in the Neurosciences. We<br /> used four different models of Artificial Neural Networks ({ANN}): Backpropagation ({BP}), Radial Basis Networks ({RBF}), Learning<br /> Vector Quantization Networks ({LVQ}) and Probabilistic Neural Networks ({PNN}) to perform classification of patients of mild Alzheimer’s<br /> disease vs. control subjects. Features are extracted from the brain volume data using Voxel-based Morphometry ({VBM}) detection<br /> clusters. The voxel location detection clusters given by the {VBM} were applied to select the voxel values upon which the classification<br /> features were computed. We have evaluated feature vectors computed from the {GM} segmentation volumes using the {VBM} clusters<br /> as voxel selection masks. The study has been performed on {MRI} volumes of 98 females, after careful demographic selection from<br /> the Open Access Series of Imaging Studies ({OASIS}) database, which is a large number of subjects compared to current reported<br /> studies.},<br /> pages = {641-648},<br /> booktitle = {Intelligent Data Engineering and Automated Learning - {IDEAL} 2009},<br /> author = {Savio, Alexandre and García-Sebastián, Maite and Hernández, Carmen and Graña, Manuel and Villanúa, Jorge},<br /> urldate = {2010-01-13},<br /> date = {2009},<br /> file = {SpringerLink Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/KPQDVTNZ/8q670qm0g4377822.html:text/html}<br /> }<br /> <br /> @inproceedings{savio_results_2009,<br /> location = {Santiago de Compostela, Spain},<br /> title = {Results of an Adaboost Approach on Alzheimer's Disease Detection on {MRI}},<br /> isbn = {978-3-642-02266-1},<br /> url = {http://portal.acm.org/citation.cfm?id=1574369},<br /> abstract = {In this paper we explore the use of the Voxel-based Morphometry ({VBM}) detection clusters to guide the feature extraction processes for the detection of Alzheimer's disease on brain Magnetic Resonance Imaging ({MRI}). The voxel location detection clusters given by the {VBM} were applied to select the voxel values upon which the classification features were computed. We have evaluated feature vectors computed over the data from the original {MRI} volumes and from the {GM} segmentation volumes, using the {VBM} clusters as voxel selection masks. We use the Support Vector Machine ({SVM}) algorithm to perform classification of patients with mild Alzheimer's disease vs. control subjects. We have also considered combinations of isolated cluster based classifiers and an Adaboost strategy applied to the {SVM} built on the feature vectors. The study has been performed on {MRI} volumes of 98 females, after careful demographic selection from the Open Access Series of Imaging Studies ({OASIS}) database, which is a large number of subjects compared to current reported studies. Results are moderately encouraging, as we can obtain up to 85\% accuracy with the Adaboost strategy in a 10-fold cross-validation.},<br /> pages = {114-123},<br /> booktitle = {Proceedings of the 3rd International Work-Conference on The Interplay Between Natural and Artificial Computation: Part {II}: Bioinspired Applications in Artificial and Natural Computation},<br /> publisher = {Springer-Verlag},<br /> author = {Savio, Alexandre and García-Sebastián, Maite and Graña, Manuel and Villanúa, Jorge},<br /> urldate = {2010-01-13},<br /> date = {2009},<br /> note = {Editors: Marios Polycarpou, André C. P. L. F. de Carvalho, Jeng-Shyang Pan, Michał Woźniak, Héctor Quintian, Emilio Corchado},<br /> file = {ACM Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/TNTTW7NV/citation.html:text/html}<br /> }<br /> <br /> @inproceedings{garcia-sebastian_use_2009,<br /> location = {Salamanca, Spain},<br /> title = {On the Use of Morphometry Based Features for Alzheimer's Disease Detection on {MRI}},<br /> isbn = {978-3-642-02477-1},<br /> url = {http://portal.acm.org/citation.cfm?id=1573045},<br /> abstract = {We have studied feature extraction processes for the detection of Alzheimer's disease on brain Magnetic Resonance Imaging ({MRI}) based on Voxel-based morphometry ({VBM}). The clusters of voxel locations detected by the {VBM} were applied to select the voxel intensity values upon which the classification features were computed. We have explored the use of the data from the original {MRI} volumes and the {GM} segmentation volumes. In this paper, we apply the Support Vector Machine ({SVM}) algorithm to perform classification of patients with mild Alzheimer's disease vs. control subjects. The study has been performed on {MRI} volumes of 98 females, after careful demographic selection from the Open Access Series of Imaging Studies ({OASIS}) database, which is a large number of subjects compared to current reported studies.},<br /> pages = {957-964},<br /> booktitle = {Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part I: Bio-Inspired Systems: Computational and Ambient Intelligence},<br /> publisher = {Springer-Verlag},<br /> author = {García-Sebastián, Maite and Savio, Alexandre and Graña, Manuel and Villanúa, Jorge},<br /> urldate = {2010-01-13},<br /> date = {2009},<br /> file = {ACM Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/AIF49A4M/citation.html:text/html}<br /> }<br /> <br /> @inproceedings{garcia-sebastian_comments_2008,<br /> title = {Comments on an evolutionary intensity inhomogeneity correction algorithm},<br /> doi = {10.1109/CEC.2008.4631363},<br /> abstract = {{\textless}p{\textgreater}We discuss some aspects of a well known algorithm for inhomogeneity intensity correction in Magnetic Resonance Imaging ({MRI}), the parametric bias correction ({PABIC}) algorithm. In this approach, the intensity inhomogeneity is modelled by a linear combination of 2D or 3D Legengre polynomials (computed as outer products of 1D polynomials). The model parameter estimation process proposed in the original paper is similar to a (1+1) Evolution Strategy, with some small and subtle differences. In this paper we discuss some features of the algorithm elements, trying to uncover sources of undesired behaviors and the limits to its applicability. We study the energy function proposed in the original paper and its relation to the image formation model. We also discuss the original minimization algorithm behavior. We think that this detailed discussion is needed because of the high impact that the original paper had in the literature, leading to an implementation into the well known {ITK} library, which means that it has become a de facto standard.{\textless}/p{\textgreater}},<br /> eventtitle = {Evolutionary Computation, 2008. {CEC} 2008. ({IEEE} World Congress on Computational Intelligence). {IEEE} Congress on},<br /> pages = {4146-4150},<br /> booktitle = {Evolutionary Computation, 2008. {CEC} 2008. ({IEEE} World Congress on Computational Intelligence). {IEEE} Congress on},<br /> author = {Garcia-Sebastian, M. and Savio, A.M. and Grana, M.},<br /> date = {2008},<br /> keywords = {biomedical {MRI}, energy function, evolutionary computation, evolutionary intensity inhomogeneity correction algorithm, evolution strategy, image formation model, {ITK} library, Legendre polynomials, Legengre polynomials, magnetic resonance imaging, medical image processing, minimization algorithm, parameter estimation, parameter estimation process, parametric bias correction},<br /> file = {IEEE Xplore PDF:/home/alexandre/Dropbox/Documents/zotero/storage/TW3GSN6F/Garcia-Sebastian et al. - 2008 - Comments on an evolutionary intensity inhomogeneit.pdf:application/pdf}<br /> }<br /> <br /> @incollection{savio_deformation_2011,<br /> title = {Deformation Based Features for Alzheimer’s Disease Detection with Linear {SVM}},<br /> rights = {©2011 Springer Berlin Heidelberg},<br /> isbn = {978-3-642-21221-5, 978-3-642-21222-2},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-21222-2_41},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Detection of Alzheimer’s disease over brain Magnetic Resonance Imaging ({MRI}) data is a priority goal in the Neurosciences. In previous works we have studied the accuracy of feature vectors obtained from {VBM} studies of the {MRI} data. In this paper we report results working on deformation based features, obtained from the deformation vectors computed by non-linear registration processes. Feature selection is based on the correlation between the scalar values computed from the deformation maps and the control variable. Results with linear kernel {SVM} reach accuracies comparable to previous best results.},<br /> pages = {336-343},<br /> number = {6679},<br /> booktitle = {Hybrid Artificial Intelligent Systems},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Savio, Alexandre and Grana, Manuel and Villanúa, Jorge},<br /> editor = {Corchado, Emilio and Kurzyński, Marek and Woźniak, Michał},<br /> urldate = {2013-09-12},<br /> date = {2011-01-01},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computation by Abstract Devices, Database Management, Information Storage and Retrieval, Information Systems Applications (incl.Internet)},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/UF4QA6DG/10.html:text/html}<br /> }<br /> <br /> @article{savio_neural_2010,<br /> title = {Neural classifiers for Schizophrenia diagnostic support on Diffusion imaging data},<br /> volume = {20},<br /> issn = {1210-0552},<br /> abstract = {Abstract: Diagnostic support for psychiatric disorders is a very interesting goal because of the... {\textbar} Article from Neural Network World January 1, 2010},<br /> pages = {935-949},<br /> journaltitle = {Neural Network World},<br /> author = {Savio, Alexandre and Charpentier, Juliette and Termenón, Maite and Shinn, Ann K. and Graña, Manuel},<br /> urldate = {2013-09-13},<br /> date = {2010-01-01},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/H9JTSDK2/1P3-2340740301.html:text/html}<br /> }<br /> <br /> @incollection{manuel_gorriz_machine_2012,<br /> title = {Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from {MRI}},<br /> isbn = {9781608052189},<br /> url = {http://www.eurekaselect.com/node/53989},<br /> pages = {141-148},<br /> booktitle = {Recent Advances in Biomedical Signal Processing},<br /> publisher = {{BENTHAM} {SCIENCE} {PUBLISHERS}},<br /> author = {Bentham Science Publisher, Bentham Science Publisher},<br /> editor = {Manuel Górriz, Juan and W. Lang, Elmar and Ramírez, Javier},<br /> urldate = {2013-09-12},<br /> date = {2012-03-29}<br /> }<br /> <br /> @incollection{savio_ensemble_2013,<br /> title = {An Ensemble of Classifiers Guided by the {AAL} Brain Atlas for Alzheimer’s Disease Detection},<br /> rights = {©2013 Springer-Verlag Berlin Heidelberg},<br /> isbn = {978-3-642-38681-7, 978-3-642-38682-4},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-38682-4_13},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Detection of Alzheimer’s disease based on Magnetic Resonance Imaging ({MRI}) still is one of the most sought goals in the neuroscientific community. Here, we evaluate a ensemble of classifiers each independently trained with disjoint data extracted from a partition of the brain data volumes performed according to the 116 regions of the Anatomical Automatic Labeling ({AAL}) brain atlas. Grey-matter probability values from 416 subjects (316 controls and 100 patients) of the {OASIS} database are estimated, partitioned into {AAL} regions, and summary statistics per region are computed to create the feature sets. Our objective is to discriminate between control subjects and Alzheimer’s disease patients. For validation we performed a leave-one-out process. Elementary classifiers are linear Support Vector Machines ({SVM}) with model parameter estimated by grid search. The ensemble is composed of one {SVM} per {AAL} region, and we test 6 different methods to make the collective decision. The best performance achieved with this approach is 83.6\% accuracy, 91.0\% sensitivity, 81.3\% specificity and 0.86 of area under the {ROC} curve. Most discriminant regions for some of the collective decision methods are also provided.},<br /> pages = {107-114},<br /> number = {7903},<br /> booktitle = {Advances in Computational Intelligence},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Savio, Alexandre and Graña, Manuel},<br /> editor = {Rojas, Ignacio and Joya, Gonzalo and Cabestany, Joan},<br /> urldate = {2013-09-12},<br /> date = {2013-01-01},<br /> keywords = {Artificial Intelligence (incl. Robotics), Bioinformatics, Computational Biology/Bioinformatics, Data Mining and Knowledge Discovery, Models and Principles, pattern recognition},<br /> file = {Full Text PDF:/home/alexandre/Dropbox/Documents/zotero/storage/4H3U6CTA/Savio and Graña - 2013 - An Ensemble of Classifiers Guided by the AAL Brain.pdf:application/pdf;Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/ESZW753K/10.html:text/html}<br /> }<br /> <br /> @article{savio_deformation_2013,<br /> title = {Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease},<br /> volume = {40},<br /> issn = {0957-4174},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0957417412010639},<br /> doi = {10.1016/j.eswa.2012.09.009},<br /> abstract = {Deformation-based Morphometry ({DBM}) allows detection of significant morphological differences of brain anatomy, such as those related to brain atrophy in Alzheimer’s Disease ({AD}). {DBM} process is as follows: First, performs the non-linear registration of a subject’s structural {MRI} volume to a reference template. Second, computes scalar measures of the registration’s deformation field. Third, performs across volume statistical group analysis of these scalar measures to detect effects. In this paper we use the scalar deformation measures for Computer Aided Diagnosis ({CAD}) systems for {AD}. Specifically this paper deals with feature extraction methods over five such scalar measures. We evaluate three supervised feature selection methods based on voxel site significance measures given by Pearson correlation, Bhattacharyya distance and Welch’s t-test, respectively. The {CAD} system discriminating between healthy control subjects ({HC}) and {AD} patients consists of a Support Vector Machine ({SVM}) classifier trained on the {DBM} selected features. The paper reports experimental results on structural {MRI} data from the cross-sectional {OASIS} database. Average 10-fold cross-validation classification results are comparable or improve the state-of-the-art results of other approaches performing {CAD} from structural {MRI} data. Localization in the brain of the most discriminant deformation voxel sites is in agreement with findings reported in the literature.},<br /> pages = {1619-1628},<br /> number = {5},<br /> journaltitle = {Expert Systems with Applications},<br /> shortjournal = {Expert Systems with Applications},<br /> author = {Savio, Alexandre and Graña, Manuel},<br /> urldate = {2014-02-13},<br /> date = {2013-04},<br /> note = {00006},<br /> keywords = {Alzheimer’s disease, Computed Aided Diagnosis, Feature selection, magnetic resonance imaging, Suppor Vector Machines}<br /> }<br /> <br /> @incollection{savio_computer_2014,<br /> title = {Computer Aided Diagnosis of Schizophrenia Based on Local-Activity Measures of Resting-State {fMRI}},<br /> rights = {©2014 Springer International Publishing Switzerland},<br /> isbn = {978-3-319-07616-4, 978-3-319-07617-1},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-319-07617-1_1},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Resting state functional Magnetic Resonance Imaging (rs-{fMRI}) is increasingly used for the identification of image biomarkers of brain diseases or psychiatric conditions, such as Schizophrenia. One approach is to perform classification experiments on the data, using feature extraction methods that allow to localize the discriminant locations in the brain, so that further studies may assess the clinical value of such locations. The classification accuracy results ensure that the located brain regions have some relation to the disease. In this paper we explore the discriminant value of brain local activity measures for the classification of Schizophrenia patients. The extensive experimental work, carried out on a publicly available database, provides evidence that local activity measures such as Regional Homogeneity ({ReHo}) may be useful for such purposes.},<br /> pages = {1-12},<br /> number = {8480},<br /> booktitle = {Hybrid Artificial Intelligence Systems},<br /> publisher = {Springer International Publishing},<br /> author = {Savio, Alexandre and Chyzhyk, Darya and Graña, Manuel},<br /> editor = {Polycarpou, Marios and Carvalho, André C. P. L. F. de and Pan, Jeng-Shyang and Woźniak, Michał and Quintian, Héctor and Corchado, Emilio},<br /> urldate = {2014-07-12},<br /> date = {2014-01-01},<br /> langid = {english},<br /> note = {00000},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computation by Abstract Devices, Image Processing and Computer Vision, Information Systems Applications (incl. Internet), pattern recognition},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/EPEM7AER/10.html:text/html}<br /> }<br /> <br /> @article{chyzhyk_evolutionary_2014,<br /> title = {Evolutionary {ELM} wrapper feature selection for Alzheimer's disease {CAD} on anatomical brain {MRI}},<br /> volume = {128},<br /> issn = {0925-2312},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0925231213010096},<br /> doi = {10.1016/j.neucom.2013.01.065},<br /> abstract = {This paper proposes an evolutionary wrapper feature selection using Extreme Learning Machines ({ELM}) as the base classifier training algorithm, comprising a Genetic Algorithm ({GA}) exploring the space of feature combinations. {GA} fitness function is the mean accuracy of a cross-validation evaluation of each individual feature selection. The marginal distribution of the classification accuracy corresponding to a feature is used to measure feature saliency. The raw features are extracted as a voxel selection from anatomical brain magnetic resonance imaging ({MRI}). Voxel selection is provided by Voxel Based Morphometry ({VBM}) which finds statistically significant clusters of voxels that have differences across {MRI} volumes on a paired dataset of Alzheimer's Disease ({AD}) and healthy controls.},<br /> pages = {73-80},<br /> journaltitle = {Neurocomputing},<br /> shortjournal = {Neurocomputing},<br /> author = {Chyzhyk, Darya and Savio, Alexandre and Graña, Manuel},<br /> urldate = {2014-07-12},<br /> date = {2014-03-27},<br /> note = {00002},<br /> keywords = {Alzheimer's disease, Evolutionary wrapper feature selection, Extreme learning machine, Neuroimaging},<br /> file = {ScienceDirect Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/NHFNFXDD/S0925231213010096.html:text/html}<br /> }<br /> <br /> @incollection{ayerdi_meta-ensembles_2013,<br /> title = {Meta-ensembles of Classifiers for Alzheimer’s Disease Detection Using Independent {ROI} Features},<br /> rights = {©2013 Springer-Verlag Berlin Heidelberg},<br /> isbn = {978-3-642-38621-3, 978-3-642-38622-0},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-38622-0_13},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Due to its growing social impact, prodromal detection of Alzheimer’s disease is of paramount importance. Biomarkers based on Magnetic Resonance Imaging ({MRI}) are one of the most sought results in the neuroscience community. In this paper we evaluate several ensembles of classifiers trained and tested in a two level ensemble scheme as follows: the 116 regions of interest ({ROI}) of the Anatomical Automatic Labeling ({AAL}) brain atlas are used to compute disjoint feature sets from the Grey-matter probability maps from the segmentation of the T1 weighted {MRI} of each subject; {ROI} features are the summary statistics inside this {ROI}; one ensemble of classifiers is trained on each independent {ROI} feature data set; the final classification of each subject is given by the combination of the classifications of each {ROI}, as meta-ensemble classifier. Experiments are performed on the 416 subjects (316 controls and 100 patients) of the {OASIS} database. We perform a hold-out of the 20\% of the data for model selection, computing a leave-one-out validation on the 80\% remaining data. Results are computed without circularity. Tested classifiers are the Extreme Learning Machines ({ELM}), Bootstrapped Dendritic Computing ({BDC}), Hybrid Extreme Random Forest ({HERF}) and Random Forest ({RF}). The best performance achieved is 80.8\% accuracy, 77.1\% specificity and 92.5\% specificity with {BDC}. We also report the most discriminant {ROIs} obtained in the model selection phase.},<br /> pages = {122-130},<br /> number = {7931},<br /> booktitle = {Natural and Artificial Computation in Engineering and Medical Applications},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Ayerdi, Borja and Savio, Alexandre and Graña, Manuel},<br /> editor = {Vicente, José Manuel Ferrández and Sánchez, José Ramón Álvarez and López, Félix de la Paz and Moreo, Fco Javier Toledo},<br /> urldate = {2014-06-14},<br /> date = {2013-01-01},<br /> note = {00000},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computational Biology/Bioinformatics, Computation by Abstract Devices, Information Systems Applications (incl. Internet), pattern recognition},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/IB8G65NN/10.html:text/html}<br /> }<br /> <br /> @article{dacosta-aguayo_prognostic_2014,<br /> title = {Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: A 3T {fMRI} pilot study},<br /> rights = {Copyright © 2014 The Authors. Human Brain Mapping published by Wiley Periodicals, Inc., This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.},<br /> issn = {1097-0193},<br /> url = {http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract},<br /> doi = {10.1002/hbm.22439},<br /> shorttitle = {Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke},<br /> abstract = {Resting-state studies conducted with stroke patients are scarce. First objective was to explore whether patients with good cognitive recovery showed differences in resting-state functional patterns of brain activity when compared to patients with poor cognitive recovery. Second objective was to determine whether such patterns were correlated with cognitive performance. Third objective was to assess the existence of prognostic factors for cognitive recovery. Eighteen right-handed stroke patients and eighteen healthy controls were included in the study. Stroke patients were divided into two groups according to their cognitive improvement observed at three months after stroke. Probabilistic independent component analysis was used to identify resting-state brain activity patterns. The analysis identified six networks: frontal, fronto-temporal, default mode network, secondary visual, parietal, and basal ganglia. Stroke patients showed significant decrease in brain activity in parietal and basal ganglia networks and a widespread increase in brain activity in the remaining ones when compared with healthy controls. When analyzed separately, patients with poor cognitive recovery (n = 10) showed the same pattern as the whole stroke patient group, while patients with good cognitive recovery (n = 8) showed increased activity only in the default mode network and fronto-temporal network, and decreased activity in the basal ganglia. We observe negative correlations between basal ganglia network activity and performance in Semantic Fluency test and Part A of the Trail Making Test for patients with poor cognitive recovery. A reverse pattern was observed between frontal network activity and the abovementioned tests for the same group. Hum Brain Mapp, 2014. © 2014 Wiley Periodicals, Inc.},<br /> pages = {n/a-n/a},<br /> journaltitle = {Human Brain Mapping},<br /> shortjournal = {Hum. Brain Mapp.},<br /> author = {Dacosta-Aguayo, R. and Graña, M. and Savio, A. and Fernández-Andújar, M. and Millán, M. and López-Cancio, E. and Cáceres, C. and Bargalló, N. and Garrido, C. and Barrios, M. and Clemente, I. C. and Hernández, M. and Munuera, J. and Dávalos, A. and Auer, T. and Mataró, M.},<br /> urldate = {2014-06-14},<br /> date = {2014-02-01},<br /> langid = {english},<br /> note = {00000},<br /> keywords = {cognitive recovery, {fMRI}, interhemispheric balance, ischemic stroke, probabilistic independent component analysis, Resting state},<br /> file = {Full Text PDF:/home/alexandre/Dropbox/Documents/zotero/storage/5BJJD2VN/Dacosta-Aguayo et al. - 2014 - Prognostic value of changes in resting-state funct.pdf:application/pdf;Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/DA9X8BGN/abstract.html:text/html}<br /> }<br /> <br /> @inproceedings{savio_supervised_2012,<br /> title = {Supervised classification using deformation-based features for Alzheimer's disease detection on the {OASIS} cross-sectional database},<br /> volume = {243},<br /> isbn = {978-1-61499-104-5},<br /> url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=32161},<br /> series = {Frontiers in Artificial Intelligence and Applications},<br /> pages = {2191-2200},<br /> booktitle = {Advances in Knowledge-Based and Intelligent Information and Engineering Systems - 16th Annual {KES} Conference, San Sebastian, Spain, 10-12 September 2012},<br /> publisher = {{IOS} Press},<br /> author = {Savio, Alexandre},<br /> editor = {Graña, Manuel and Toro, Carlos and Posada, Jorge and Howlett, Robert J. and Jain, Lakhmi C.},<br /> urldate = {2014-07-12},<br /> date = {2012},<br /> note = {00002}<br /> }<br /> <br /> @article{jbabdi_model-based_2012,<br /> title = {Model-based analysis of multishell diffusion {MR} data for tractography: How to get over fitting problems},<br /> volume = {68},<br /> rights = {Copyright © 2012 Wiley Periodicals, Inc.},<br /> issn = {1522-2594},<br /> url = {http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract},<br /> doi = {10.1002/mrm.24204},<br /> shorttitle = {Model-based analysis of multishell diffusion {MR} data for tractography},<br /> abstract = {In this article, we highlight an issue that arises when using multiple b-values in a model-based analysis of diffusion {MR} data for tractography. The non-monoexponential decay, commonly observed in experimental data, is shown to induce overfitting in the distribution of fiber orientations when not considered in the model. Extra fiber orientations perpendicular to the main orientation arise to compensate for the slower apparent signal decay at higher b-values. We propose a simple extension to the ball and stick model based on a continuous gamma distribution of diffusivities, which significantly improves the fitting and reduces the overfitting. Using in vivo experimental data, we show that this model outperforms a simpler, noise floor model, especially at the interfaces between brain tissues, suggesting that partial volume effects are a major cause of the observed non-monoexponential decay. This model may be helpful for future data acquisition strategies that may attempt to combine multiple shells to improve estimates of fiber orientations in white matter and near the cortex. Magn Reson Med, 2012. © 2012 Wiley Periodicals, Inc.},<br /> pages = {1846-1855},<br /> number = {6},<br /> journaltitle = {Magnetic Resonance in Medicine},<br /> shortjournal = {Magn Reson Med},<br /> author = {Jbabdi, Saad and Sotiropoulos, Stamatios N. and Savio, Alexander M. and Graña, Manuel and Behrens, Timothy E. J.},<br /> urldate = {2014-07-12},<br /> date = {2012-12-01},<br /> langid = {english},<br /> note = {00024},<br /> keywords = {Diffusion {MRI}, multishell, Tractography},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/GUS9IQI3/abstract.html:text/html}<br /> }<br /> <br /> @article{chyzhyk_hybrid_2012,<br /> title = {Hybrid Dendritic Computing with kernel-{LICA} Applied to Alzheimer's Disease Detection in {MRI}},<br /> volume = {75},<br /> issn = {0925-2312},<br /> url = {http://dx.doi.org/10.1016/j.neucom.2011.02.024},<br /> doi = {10.1016/j.neucom.2011.02.024},<br /> abstract = {Dendritic computing has been proved to produce perfect approximation of any data distribution. This result guarantees perfect accuracy training. However, we have found great performance degradation when tested on conventional k-fold cross-validation schemes. In this paper we propose to use Lattice Independent Component Analysis ({LICA}) and the Kernel transformation of the data as an appropriate feature extraction that improves the generalization of dendritic computing classifiers. We obtain a big increase in classification performance applying with this schema over a database of features extracted from Magnetic Resonance Imaging ({MRI}) including Alzheimer's disease ({AD}) patients and control subjects.},<br /> pages = {72–77},<br /> number = {1},<br /> journaltitle = {Neurocomput.},<br /> author = {Chyzhyk, Darya and Graña, Manuel and Savio, Alexandre and Maiora, Josu},<br /> urldate = {2014-07-12},<br /> date = {2012-01},<br /> note = {00024},<br /> keywords = {Alzheimer's disease, Dendritic computing, Kernel method, Lattice computing, Lattice Independent Component Analysis}<br /> }<br /> <br /> @article{grana_computer_2011,<br /> title = {Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation},<br /> volume = {502},<br /> issn = {0304-3940},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0304394011011268},<br /> doi = {10.1016/j.neulet.2011.07.049},<br /> abstract = {The aim of this paper is to obtain discriminant features from two scalar measures of Diffusion Tensor Imaging ({DTI}) data, Fractional Anisotropy ({FA}) and Mean Diffusivity ({MD}), and to train and test classifiers able to discriminate Alzheimer's Disease ({AD}) patients from controls on the basis of features extracted from the {FA} or {MD} volumes. In this study, support vector machine ({SVM}) classifier was trained and tested on {FA} and {MD} data. Feature selection is done computing the Pearson's correlation between {FA} or {MD} values at voxel site across subjects and the indicative variable specifying the subject class. Voxel sites with high absolute correlation are selected for feature extraction. Results are obtained over an on-going study in Hospital de Santiago Apostol collecting anatomical T1-weighted {MRI} volumes and {DTI} data from healthy control subjects and {AD} patients. {FA} features and a linear {SVM} classifier achieve perfect accuracy, sensitivity and specificity in several cross-validation studies, supporting the usefulness of {DTI}-derived features as an image-marker for {AD} and to the feasibility of building Computer Aided Diagnosis systems for {AD} based on them.},<br /> pages = {225-229},<br /> number = {3},<br /> journaltitle = {Neuroscience Letters},<br /> shortjournal = {Neuroscience Letters},<br /> author = {Graña, M. and Termenon, M. and Savio, A. and Gonzalez-Pinto, A. and Echeveste, J. and Pérez, J. M. and Besga, A.},<br /> urldate = {2014-07-12},<br /> date = {2011-09-20},<br /> note = {00000},<br /> keywords = {Alzheimer's disease, Classification, Diffusion tensor imaging ({DTI}), Feature selection, Fractional anisotropy, image registration, Mean diffusivity, support vector machines},<br /> file = {ScienceDirect Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/QT6E79J5/S0304394011011268.html:text/html}<br /> }<br /> <br /> @article{savio_neurocognitive_2011,<br /> title = {Neurocognitive disorder detection based on feature vectors extracted from {VBM} analysis of structural {MRI}},<br /> volume = {41},<br /> issn = {1879-0534},<br /> doi = {10.1016/j.compbiomed.2011.05.010},<br /> abstract = {Dementia is a growing concern due to the aging process of the western societies. Non-invasive detection is therefore a high priority research endeavor. In this paper we report results of classification systems applied to the feature vectors obtained by a feature extraction method computed on structural magnetic resonance imaging ({sMRI}) volumes for the detection of two neurological disorders with cognitive impairment: myotonic dystrophy of type 1 ({MD}1) and Alzheimer disease ({AD}). The feature extraction process is based on the voxel clusters detected by voxel-based morphometry ({VBM}) analysis of {sMRI} upon a set of patient and control subjects. This feature extraction process is specific for each kind of disease and is grounded on the findings obtained by medical experts. The 10-fold cross-validation results of several statistical and neural network based classification algorithms trained and tested on these features show high specificity and moderate sensitivity of the classifiers, suggesting that the approach is better suited for rejecting than for detecting early stages of the diseases.},<br /> pages = {600-610},<br /> number = {8},<br /> journaltitle = {Computers in Biology and Medicine},<br /> shortjournal = {Comput. Biol. Med.},<br /> author = {Savio, A. and García-Sebastián, M. T. and Chyzyk, D. and Hernandez, C. and Graña, M. and Sistiaga, A. and de Munain, A. López and Villanúa, J.},<br /> date = {2011-08},<br /> note = {00023 {PMID}: 21621760},<br /> keywords = {Adult, Algorithms, Alzheimer Disease, Brain, Cluster Analysis, Female, Humans, Image Processing, Computer-Assisted, magnetic resonance imaging, Male, Middle Aged, Myotonic Dystrophy, Neural Networks (Computer), Reproducibility of Results}<br /> }<br /> <br /> @article{grana_lattice_2010,<br /> title = {A lattice computing approach for on-line {fMRI} analysis},<br /> volume = {28},<br /> issn = {0262-8856},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0262885609002182},<br /> doi = {10.1016/j.imavis.2009.10.004},<br /> series = {Online pattern recognition and machine learning techniques for computer-vision: Theory and applications},<br /> abstract = {We introduce an approach to {fMRI} analysis based on the Endmember Induction Heuristic Algorithm ({EIHA}). This algorithm uses the Lattice Associative Memory ({LAM}) to detect Lattice Independent vectors, which can be assumed to be Affine Independent, and therefore candidates to be the endmembers of the data. Induced endmembers are used to compute the activation levels of voxels as result of an unmixing process. The endmembers correspond to diverse activation patterns, one of these activation patterns corresponds to the resting state of the neuronal tissue. The on-line working of the algorithm does not need neither a previous training process nor a priori models of the data. Results on a case study compare with the results given by the state of art {SPM} software.},<br /> pages = {1155-1161},<br /> number = {7},<br /> journaltitle = {Image and Vision Computing},<br /> shortjournal = {Image and Vision Computing},<br /> author = {Graña, Manuel and Savio, Alexandre M. and García-Sebastián, Maite and Fernandez, Elsa},<br /> urldate = {2014-07-12},<br /> date = {2010-07},<br /> note = {00023},<br /> keywords = {{fMRI}, Lattice Associative Memories, Lattice computing, Linear mixing model},<br /> file = {ScienceDirect Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/IXT3UEDV/S0262885609002182.html:text/html}<br /> }<br /> <br /> @incollection{chyzyk_comparison_2010,<br /> title = {A Comparison of {VBM} Results by {SPM}, {ICA} and {LICA}},<br /> rights = {©2010 Springer-Verlag Berlin Heidelberg},<br /> isbn = {978-3-642-13802-7, 978-3-642-13803-4},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-13803-4_53},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Lattice Independent Component Analysis ({LICA}) approach consists of a detection of independent vectors in the morphological or lattice theoretic sense that are the basis for a linear decomposition of the data. We apply it in this paper to a Voxel Based Morphometry ({VBM}) study on Alzheimer’s disease ({AD}) patients extracted from a well known public database. The approach is compared to {SPM} and Independent Component Analysis results.},<br /> pages = {429-435},<br /> number = {6077},<br /> booktitle = {Hybrid Artificial Intelligence Systems},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Chyzyk, Darya and Termenon, Maite and Savio, Alexandre},<br /> editor = {Corchado, Emilio and Romay, Manuel Graña and Savio, Alexandre Manhaes},<br /> urldate = {2014-07-12},<br /> date = {2010-01-01},<br /> langid = {english},<br /> note = {00002},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computation by Abstract Devices, Database Management, Information Storage and Retrieval, Information Systems Applications (incl.Internet)},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/SDRST9QG/10.html:text/html}<br /> }<br /> <br /> &lt;/nowiki&gt;</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Alexsavio_own_bibLatex&diff=16883 2014-07-12T19:20:05Z

<p>Alexsavio: Página creada con « @incollection{savio_classification_2009, title = {Classification Results of Artificial Neural Networks for Alzheimer’s Disease Detection}, url = {http://dx.doi.org/10....»</p> <hr /> <div><br /> @incollection{savio_classification_2009,<br /> title = {Classification Results of Artificial Neural Networks for Alzheimer’s Disease Detection},<br /> url = {http://dx.doi.org/10.1007/978-3-642-04394-9_78},<br /> abstract = {Detection of Alzheimer’s disease on brain Magnetic Resonance Imaging ({MRI}) is a highly sought goal in the Neurosciences. We<br /> used four different models of Artificial Neural Networks ({ANN}): Backpropagation ({BP}), Radial Basis Networks ({RBF}), Learning<br /> Vector Quantization Networks ({LVQ}) and Probabilistic Neural Networks ({PNN}) to perform classification of patients of mild Alzheimer’s<br /> disease vs. control subjects. Features are extracted from the brain volume data using Voxel-based Morphometry ({VBM}) detection<br /> clusters. The voxel location detection clusters given by the {VBM} were applied to select the voxel values upon which the classification<br /> features were computed. We have evaluated feature vectors computed from the {GM} segmentation volumes using the {VBM} clusters<br /> as voxel selection masks. The study has been performed on {MRI} volumes of 98 females, after careful demographic selection from<br /> the Open Access Series of Imaging Studies ({OASIS}) database, which is a large number of subjects compared to current reported<br /> studies.},<br /> pages = {641-648},<br /> booktitle = {Intelligent Data Engineering and Automated Learning - {IDEAL} 2009},<br /> author = {Savio, Alexandre and García-Sebastián, Maite and Hernández, Carmen and Graña, Manuel and Villanúa, Jorge},<br /> urldate = {2010-01-13},<br /> date = {2009},<br /> file = {SpringerLink Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/KPQDVTNZ/8q670qm0g4377822.html:text/html}<br /> }<br /> <br /> @inproceedings{savio_results_2009,<br /> location = {Santiago de Compostela, Spain},<br /> title = {Results of an Adaboost Approach on Alzheimer's Disease Detection on {MRI}},<br /> isbn = {978-3-642-02266-1},<br /> url = {http://portal.acm.org/citation.cfm?id=1574369},<br /> abstract = {In this paper we explore the use of the Voxel-based Morphometry ({VBM}) detection clusters to guide the feature extraction processes for the detection of Alzheimer's disease on brain Magnetic Resonance Imaging ({MRI}). The voxel location detection clusters given by the {VBM} were applied to select the voxel values upon which the classification features were computed. We have evaluated feature vectors computed over the data from the original {MRI} volumes and from the {GM} segmentation volumes, using the {VBM} clusters as voxel selection masks. We use the Support Vector Machine ({SVM}) algorithm to perform classification of patients with mild Alzheimer's disease vs. control subjects. We have also considered combinations of isolated cluster based classifiers and an Adaboost strategy applied to the {SVM} built on the feature vectors. The study has been performed on {MRI} volumes of 98 females, after careful demographic selection from the Open Access Series of Imaging Studies ({OASIS}) database, which is a large number of subjects compared to current reported studies. Results are moderately encouraging, as we can obtain up to 85\% accuracy with the Adaboost strategy in a 10-fold cross-validation.},<br /> pages = {114-123},<br /> booktitle = {Proceedings of the 3rd International Work-Conference on The Interplay Between Natural and Artificial Computation: Part {II}: Bioinspired Applications in Artificial and Natural Computation},<br /> publisher = {Springer-Verlag},<br /> author = {Savio, Alexandre and García-Sebastián, Maite and Graña, Manuel and Villanúa, Jorge},<br /> urldate = {2010-01-13},<br /> date = {2009},<br /> note = {Editors: Marios Polycarpou, André C. P. L. F. de Carvalho, Jeng-Shyang Pan, Michał Woźniak, Héctor Quintian, Emilio Corchado},<br /> file = {ACM Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/TNTTW7NV/citation.html:text/html}<br /> }<br /> <br /> @inproceedings{garcia-sebastian_use_2009,<br /> location = {Salamanca, Spain},<br /> title = {On the Use of Morphometry Based Features for Alzheimer's Disease Detection on {MRI}},<br /> isbn = {978-3-642-02477-1},<br /> url = {http://portal.acm.org/citation.cfm?id=1573045},<br /> abstract = {We have studied feature extraction processes for the detection of Alzheimer's disease on brain Magnetic Resonance Imaging ({MRI}) based on Voxel-based morphometry ({VBM}). The clusters of voxel locations detected by the {VBM} were applied to select the voxel intensity values upon which the classification features were computed. We have explored the use of the data from the original {MRI} volumes and the {GM} segmentation volumes. In this paper, we apply the Support Vector Machine ({SVM}) algorithm to perform classification of patients with mild Alzheimer's disease vs. control subjects. The study has been performed on {MRI} volumes of 98 females, after careful demographic selection from the Open Access Series of Imaging Studies ({OASIS}) database, which is a large number of subjects compared to current reported studies.},<br /> pages = {957-964},<br /> booktitle = {Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part I: Bio-Inspired Systems: Computational and Ambient Intelligence},<br /> publisher = {Springer-Verlag},<br /> author = {García-Sebastián, Maite and Savio, Alexandre and Graña, Manuel and Villanúa, Jorge},<br /> urldate = {2010-01-13},<br /> date = {2009},<br /> file = {ACM Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/AIF49A4M/citation.html:text/html}<br /> }<br /> <br /> @inproceedings{garcia-sebastian_comments_2008,<br /> title = {Comments on an evolutionary intensity inhomogeneity correction algorithm},<br /> doi = {10.1109/CEC.2008.4631363},<br /> abstract = {{\textless}p{\textgreater}We discuss some aspects of a well known algorithm for inhomogeneity intensity correction in Magnetic Resonance Imaging ({MRI}), the parametric bias correction ({PABIC}) algorithm. In this approach, the intensity inhomogeneity is modelled by a linear combination of 2D or 3D Legengre polynomials (computed as outer products of 1D polynomials). The model parameter estimation process proposed in the original paper is similar to a (1+1) Evolution Strategy, with some small and subtle differences. In this paper we discuss some features of the algorithm elements, trying to uncover sources of undesired behaviors and the limits to its applicability. We study the energy function proposed in the original paper and its relation to the image formation model. We also discuss the original minimization algorithm behavior. We think that this detailed discussion is needed because of the high impact that the original paper had in the literature, leading to an implementation into the well known {ITK} library, which means that it has become a de facto standard.{\textless}/p{\textgreater}},<br /> eventtitle = {Evolutionary Computation, 2008. {CEC} 2008. ({IEEE} World Congress on Computational Intelligence). {IEEE} Congress on},<br /> pages = {4146-4150},<br /> booktitle = {Evolutionary Computation, 2008. {CEC} 2008. ({IEEE} World Congress on Computational Intelligence). {IEEE} Congress on},<br /> author = {Garcia-Sebastian, M. and Savio, A.M. and Grana, M.},<br /> date = {2008},<br /> keywords = {biomedical {MRI}, energy function, evolutionary computation, evolutionary intensity inhomogeneity correction algorithm, evolution strategy, image formation model, {ITK} library, Legendre polynomials, Legengre polynomials, magnetic resonance imaging, medical image processing, minimization algorithm, parameter estimation, parameter estimation process, parametric bias correction},<br /> file = {IEEE Xplore PDF:/home/alexandre/Dropbox/Documents/zotero/storage/TW3GSN6F/Garcia-Sebastian et al. - 2008 - Comments on an evolutionary intensity inhomogeneit.pdf:application/pdf}<br /> }<br /> <br /> @incollection{savio_deformation_2011,<br /> title = {Deformation Based Features for Alzheimer’s Disease Detection with Linear {SVM}},<br /> rights = {©2011 Springer Berlin Heidelberg},<br /> isbn = {978-3-642-21221-5, 978-3-642-21222-2},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-21222-2_41},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Detection of Alzheimer’s disease over brain Magnetic Resonance Imaging ({MRI}) data is a priority goal in the Neurosciences. In previous works we have studied the accuracy of feature vectors obtained from {VBM} studies of the {MRI} data. In this paper we report results working on deformation based features, obtained from the deformation vectors computed by non-linear registration processes. Feature selection is based on the correlation between the scalar values computed from the deformation maps and the control variable. Results with linear kernel {SVM} reach accuracies comparable to previous best results.},<br /> pages = {336-343},<br /> number = {6679},<br /> booktitle = {Hybrid Artificial Intelligent Systems},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Savio, Alexandre and Grana, Manuel and Villanúa, Jorge},<br /> editor = {Corchado, Emilio and Kurzyński, Marek and Woźniak, Michał},<br /> urldate = {2013-09-12},<br /> date = {2011-01-01},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computation by Abstract Devices, Database Management, Information Storage and Retrieval, Information Systems Applications (incl.Internet)},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/UF4QA6DG/10.html:text/html}<br /> }<br /> <br /> @article{savio_neural_2010,<br /> title = {Neural classifiers for Schizophrenia diagnostic support on Diffusion imaging data},<br /> volume = {20},<br /> issn = {1210-0552},<br /> abstract = {Abstract: Diagnostic support for psychiatric disorders is a very interesting goal because of the... {\textbar} Article from Neural Network World January 1, 2010},<br /> pages = {935-949},<br /> journaltitle = {Neural Network World},<br /> author = {Savio, Alexandre and Charpentier, Juliette and Termenón, Maite and Shinn, Ann K. and Graña, Manuel},<br /> urldate = {2013-09-13},<br /> date = {2010-01-01},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/H9JTSDK2/1P3-2340740301.html:text/html}<br /> }<br /> <br /> @incollection{manuel_gorriz_machine_2012,<br /> title = {Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from {MRI}},<br /> isbn = {9781608052189},<br /> url = {http://www.eurekaselect.com/node/53989},<br /> pages = {141-148},<br /> booktitle = {Recent Advances in Biomedical Signal Processing},<br /> publisher = {{BENTHAM} {SCIENCE} {PUBLISHERS}},<br /> author = {Bentham Science Publisher, Bentham Science Publisher},<br /> editor = {Manuel Górriz, Juan and W. Lang, Elmar and Ramírez, Javier},<br /> urldate = {2013-09-12},<br /> date = {2012-03-29}<br /> }<br /> <br /> @incollection{savio_ensemble_2013,<br /> title = {An Ensemble of Classifiers Guided by the {AAL} Brain Atlas for Alzheimer’s Disease Detection},<br /> rights = {©2013 Springer-Verlag Berlin Heidelberg},<br /> isbn = {978-3-642-38681-7, 978-3-642-38682-4},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-38682-4_13},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Detection of Alzheimer’s disease based on Magnetic Resonance Imaging ({MRI}) still is one of the most sought goals in the neuroscientific community. Here, we evaluate a ensemble of classifiers each independently trained with disjoint data extracted from a partition of the brain data volumes performed according to the 116 regions of the Anatomical Automatic Labeling ({AAL}) brain atlas. Grey-matter probability values from 416 subjects (316 controls and 100 patients) of the {OASIS} database are estimated, partitioned into {AAL} regions, and summary statistics per region are computed to create the feature sets. Our objective is to discriminate between control subjects and Alzheimer’s disease patients. For validation we performed a leave-one-out process. Elementary classifiers are linear Support Vector Machines ({SVM}) with model parameter estimated by grid search. The ensemble is composed of one {SVM} per {AAL} region, and we test 6 different methods to make the collective decision. The best performance achieved with this approach is 83.6\% accuracy, 91.0\% sensitivity, 81.3\% specificity and 0.86 of area under the {ROC} curve. Most discriminant regions for some of the collective decision methods are also provided.},<br /> pages = {107-114},<br /> number = {7903},<br /> booktitle = {Advances in Computational Intelligence},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Savio, Alexandre and Graña, Manuel},<br /> editor = {Rojas, Ignacio and Joya, Gonzalo and Cabestany, Joan},<br /> urldate = {2013-09-12},<br /> date = {2013-01-01},<br /> keywords = {Artificial Intelligence (incl. Robotics), Bioinformatics, Computational Biology/Bioinformatics, Data Mining and Knowledge Discovery, Models and Principles, pattern recognition},<br /> file = {Full Text PDF:/home/alexandre/Dropbox/Documents/zotero/storage/4H3U6CTA/Savio and Graña - 2013 - An Ensemble of Classifiers Guided by the AAL Brain.pdf:application/pdf;Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/ESZW753K/10.html:text/html}<br /> }<br /> <br /> @article{savio_deformation_2013,<br /> title = {Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease},<br /> volume = {40},<br /> issn = {0957-4174},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0957417412010639},<br /> doi = {10.1016/j.eswa.2012.09.009},<br /> abstract = {Deformation-based Morphometry ({DBM}) allows detection of significant morphological differences of brain anatomy, such as those related to brain atrophy in Alzheimer’s Disease ({AD}). {DBM} process is as follows: First, performs the non-linear registration of a subject’s structural {MRI} volume to a reference template. Second, computes scalar measures of the registration’s deformation field. Third, performs across volume statistical group analysis of these scalar measures to detect effects. In this paper we use the scalar deformation measures for Computer Aided Diagnosis ({CAD}) systems for {AD}. Specifically this paper deals with feature extraction methods over five such scalar measures. We evaluate three supervised feature selection methods based on voxel site significance measures given by Pearson correlation, Bhattacharyya distance and Welch’s t-test, respectively. The {CAD} system discriminating between healthy control subjects ({HC}) and {AD} patients consists of a Support Vector Machine ({SVM}) classifier trained on the {DBM} selected features. The paper reports experimental results on structural {MRI} data from the cross-sectional {OASIS} database. Average 10-fold cross-validation classification results are comparable or improve the state-of-the-art results of other approaches performing {CAD} from structural {MRI} data. Localization in the brain of the most discriminant deformation voxel sites is in agreement with findings reported in the literature.},<br /> pages = {1619-1628},<br /> number = {5},<br /> journaltitle = {Expert Systems with Applications},<br /> shortjournal = {Expert Systems with Applications},<br /> author = {Savio, Alexandre and Graña, Manuel},<br /> urldate = {2014-02-13},<br /> date = {2013-04},<br /> note = {00006},<br /> keywords = {Alzheimer’s disease, Computed Aided Diagnosis, Feature selection, magnetic resonance imaging, Suppor Vector Machines}<br /> }<br /> <br /> @incollection{savio_computer_2014,<br /> title = {Computer Aided Diagnosis of Schizophrenia Based on Local-Activity Measures of Resting-State {fMRI}},<br /> rights = {©2014 Springer International Publishing Switzerland},<br /> isbn = {978-3-319-07616-4, 978-3-319-07617-1},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-319-07617-1_1},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Resting state functional Magnetic Resonance Imaging (rs-{fMRI}) is increasingly used for the identification of image biomarkers of brain diseases or psychiatric conditions, such as Schizophrenia. One approach is to perform classification experiments on the data, using feature extraction methods that allow to localize the discriminant locations in the brain, so that further studies may assess the clinical value of such locations. The classification accuracy results ensure that the located brain regions have some relation to the disease. In this paper we explore the discriminant value of brain local activity measures for the classification of Schizophrenia patients. The extensive experimental work, carried out on a publicly available database, provides evidence that local activity measures such as Regional Homogeneity ({ReHo}) may be useful for such purposes.},<br /> pages = {1-12},<br /> number = {8480},<br /> booktitle = {Hybrid Artificial Intelligence Systems},<br /> publisher = {Springer International Publishing},<br /> author = {Savio, Alexandre and Chyzhyk, Darya and Graña, Manuel},<br /> editor = {Polycarpou, Marios and Carvalho, André C. P. L. F. de and Pan, Jeng-Shyang and Woźniak, Michał and Quintian, Héctor and Corchado, Emilio},<br /> urldate = {2014-07-12},<br /> date = {2014-01-01},<br /> langid = {english},<br /> note = {00000},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computation by Abstract Devices, Image Processing and Computer Vision, Information Systems Applications (incl. Internet), pattern recognition},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/EPEM7AER/10.html:text/html}<br /> }<br /> <br /> @article{chyzhyk_evolutionary_2014,<br /> title = {Evolutionary {ELM} wrapper feature selection for Alzheimer's disease {CAD} on anatomical brain {MRI}},<br /> volume = {128},<br /> issn = {0925-2312},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0925231213010096},<br /> doi = {10.1016/j.neucom.2013.01.065},<br /> abstract = {This paper proposes an evolutionary wrapper feature selection using Extreme Learning Machines ({ELM}) as the base classifier training algorithm, comprising a Genetic Algorithm ({GA}) exploring the space of feature combinations. {GA} fitness function is the mean accuracy of a cross-validation evaluation of each individual feature selection. The marginal distribution of the classification accuracy corresponding to a feature is used to measure feature saliency. The raw features are extracted as a voxel selection from anatomical brain magnetic resonance imaging ({MRI}). Voxel selection is provided by Voxel Based Morphometry ({VBM}) which finds statistically significant clusters of voxels that have differences across {MRI} volumes on a paired dataset of Alzheimer's Disease ({AD}) and healthy controls.},<br /> pages = {73-80},<br /> journaltitle = {Neurocomputing},<br /> shortjournal = {Neurocomputing},<br /> author = {Chyzhyk, Darya and Savio, Alexandre and Graña, Manuel},<br /> urldate = {2014-07-12},<br /> date = {2014-03-27},<br /> note = {00002},<br /> keywords = {Alzheimer's disease, Evolutionary wrapper feature selection, Extreme learning machine, Neuroimaging},<br /> file = {ScienceDirect Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/NHFNFXDD/S0925231213010096.html:text/html}<br /> }<br /> <br /> @incollection{ayerdi_meta-ensembles_2013,<br /> title = {Meta-ensembles of Classifiers for Alzheimer’s Disease Detection Using Independent {ROI} Features},<br /> rights = {©2013 Springer-Verlag Berlin Heidelberg},<br /> isbn = {978-3-642-38621-3, 978-3-642-38622-0},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-38622-0_13},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Due to its growing social impact, prodromal detection of Alzheimer’s disease is of paramount importance. Biomarkers based on Magnetic Resonance Imaging ({MRI}) are one of the most sought results in the neuroscience community. In this paper we evaluate several ensembles of classifiers trained and tested in a two level ensemble scheme as follows: the 116 regions of interest ({ROI}) of the Anatomical Automatic Labeling ({AAL}) brain atlas are used to compute disjoint feature sets from the Grey-matter probability maps from the segmentation of the T1 weighted {MRI} of each subject; {ROI} features are the summary statistics inside this {ROI}; one ensemble of classifiers is trained on each independent {ROI} feature data set; the final classification of each subject is given by the combination of the classifications of each {ROI}, as meta-ensemble classifier. Experiments are performed on the 416 subjects (316 controls and 100 patients) of the {OASIS} database. We perform a hold-out of the 20\% of the data for model selection, computing a leave-one-out validation on the 80\% remaining data. Results are computed without circularity. Tested classifiers are the Extreme Learning Machines ({ELM}), Bootstrapped Dendritic Computing ({BDC}), Hybrid Extreme Random Forest ({HERF}) and Random Forest ({RF}). The best performance achieved is 80.8\% accuracy, 77.1\% specificity and 92.5\% specificity with {BDC}. We also report the most discriminant {ROIs} obtained in the model selection phase.},<br /> pages = {122-130},<br /> number = {7931},<br /> booktitle = {Natural and Artificial Computation in Engineering and Medical Applications},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Ayerdi, Borja and Savio, Alexandre and Graña, Manuel},<br /> editor = {Vicente, José Manuel Ferrández and Sánchez, José Ramón Álvarez and López, Félix de la Paz and Moreo, Fco Javier Toledo},<br /> urldate = {2014-06-14},<br /> date = {2013-01-01},<br /> note = {00000},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computational Biology/Bioinformatics, Computation by Abstract Devices, Information Systems Applications (incl. Internet), pattern recognition},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/IB8G65NN/10.html:text/html}<br /> }<br /> <br /> @article{dacosta-aguayo_prognostic_2014,<br /> title = {Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: A 3T {fMRI} pilot study},<br /> rights = {Copyright © 2014 The Authors. Human Brain Mapping published by Wiley Periodicals, Inc., This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.},<br /> issn = {1097-0193},<br /> url = {http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract},<br /> doi = {10.1002/hbm.22439},<br /> shorttitle = {Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke},<br /> abstract = {Resting-state studies conducted with stroke patients are scarce. First objective was to explore whether patients with good cognitive recovery showed differences in resting-state functional patterns of brain activity when compared to patients with poor cognitive recovery. Second objective was to determine whether such patterns were correlated with cognitive performance. Third objective was to assess the existence of prognostic factors for cognitive recovery. Eighteen right-handed stroke patients and eighteen healthy controls were included in the study. Stroke patients were divided into two groups according to their cognitive improvement observed at three months after stroke. Probabilistic independent component analysis was used to identify resting-state brain activity patterns. The analysis identified six networks: frontal, fronto-temporal, default mode network, secondary visual, parietal, and basal ganglia. Stroke patients showed significant decrease in brain activity in parietal and basal ganglia networks and a widespread increase in brain activity in the remaining ones when compared with healthy controls. When analyzed separately, patients with poor cognitive recovery (n = 10) showed the same pattern as the whole stroke patient group, while patients with good cognitive recovery (n = 8) showed increased activity only in the default mode network and fronto-temporal network, and decreased activity in the basal ganglia. We observe negative correlations between basal ganglia network activity and performance in Semantic Fluency test and Part A of the Trail Making Test for patients with poor cognitive recovery. A reverse pattern was observed between frontal network activity and the abovementioned tests for the same group. Hum Brain Mapp, 2014. © 2014 Wiley Periodicals, Inc.},<br /> pages = {n/a-n/a},<br /> journaltitle = {Human Brain Mapping},<br /> shortjournal = {Hum. Brain Mapp.},<br /> author = {Dacosta-Aguayo, R. and Graña, M. and Savio, A. and Fernández-Andújar, M. and Millán, M. and López-Cancio, E. and Cáceres, C. and Bargalló, N. and Garrido, C. and Barrios, M. and Clemente, I. C. and Hernández, M. and Munuera, J. and Dávalos, A. and Auer, T. and Mataró, M.},<br /> urldate = {2014-06-14},<br /> date = {2014-02-01},<br /> langid = {english},<br /> note = {00000},<br /> keywords = {cognitive recovery, {fMRI}, interhemispheric balance, ischemic stroke, probabilistic independent component analysis, Resting state},<br /> file = {Full Text PDF:/home/alexandre/Dropbox/Documents/zotero/storage/5BJJD2VN/Dacosta-Aguayo et al. - 2014 - Prognostic value of changes in resting-state funct.pdf:application/pdf;Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/DA9X8BGN/abstract.html:text/html}<br /> }<br /> <br /> @inproceedings{savio_supervised_2012,<br /> title = {Supervised classification using deformation-based features for Alzheimer's disease detection on the {OASIS} cross-sectional database},<br /> volume = {243},<br /> isbn = {978-1-61499-104-5},<br /> url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=32161},<br /> series = {Frontiers in Artificial Intelligence and Applications},<br /> pages = {2191-2200},<br /> booktitle = {Advances in Knowledge-Based and Intelligent Information and Engineering Systems - 16th Annual {KES} Conference, San Sebastian, Spain, 10-12 September 2012},<br /> publisher = {{IOS} Press},<br /> author = {Savio, Alexandre},<br /> editor = {Graña, Manuel and Toro, Carlos and Posada, Jorge and Howlett, Robert J. and Jain, Lakhmi C.},<br /> urldate = {2014-07-12},<br /> date = {2012},<br /> note = {00002}<br /> }<br /> <br /> @article{jbabdi_model-based_2012,<br /> title = {Model-based analysis of multishell diffusion {MR} data for tractography: How to get over fitting problems},<br /> volume = {68},<br /> rights = {Copyright © 2012 Wiley Periodicals, Inc.},<br /> issn = {1522-2594},<br /> url = {http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract},<br /> doi = {10.1002/mrm.24204},<br /> shorttitle = {Model-based analysis of multishell diffusion {MR} data for tractography},<br /> abstract = {In this article, we highlight an issue that arises when using multiple b-values in a model-based analysis of diffusion {MR} data for tractography. The non-monoexponential decay, commonly observed in experimental data, is shown to induce overfitting in the distribution of fiber orientations when not considered in the model. Extra fiber orientations perpendicular to the main orientation arise to compensate for the slower apparent signal decay at higher b-values. We propose a simple extension to the ball and stick model based on a continuous gamma distribution of diffusivities, which significantly improves the fitting and reduces the overfitting. Using in vivo experimental data, we show that this model outperforms a simpler, noise floor model, especially at the interfaces between brain tissues, suggesting that partial volume effects are a major cause of the observed non-monoexponential decay. This model may be helpful for future data acquisition strategies that may attempt to combine multiple shells to improve estimates of fiber orientations in white matter and near the cortex. Magn Reson Med, 2012. © 2012 Wiley Periodicals, Inc.},<br /> pages = {1846-1855},<br /> number = {6},<br /> journaltitle = {Magnetic Resonance in Medicine},<br /> shortjournal = {Magn Reson Med},<br /> author = {Jbabdi, Saad and Sotiropoulos, Stamatios N. and Savio, Alexander M. and Graña, Manuel and Behrens, Timothy E. J.},<br /> urldate = {2014-07-12},<br /> date = {2012-12-01},<br /> langid = {english},<br /> note = {00024},<br /> keywords = {Diffusion {MRI}, multishell, Tractography},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/GUS9IQI3/abstract.html:text/html}<br /> }<br /> <br /> @article{chyzhyk_hybrid_2012,<br /> title = {Hybrid Dendritic Computing with kernel-{LICA} Applied to Alzheimer's Disease Detection in {MRI}},<br /> volume = {75},<br /> issn = {0925-2312},<br /> url = {http://dx.doi.org/10.1016/j.neucom.2011.02.024},<br /> doi = {10.1016/j.neucom.2011.02.024},<br /> abstract = {Dendritic computing has been proved to produce perfect approximation of any data distribution. This result guarantees perfect accuracy training. However, we have found great performance degradation when tested on conventional k-fold cross-validation schemes. In this paper we propose to use Lattice Independent Component Analysis ({LICA}) and the Kernel transformation of the data as an appropriate feature extraction that improves the generalization of dendritic computing classifiers. We obtain a big increase in classification performance applying with this schema over a database of features extracted from Magnetic Resonance Imaging ({MRI}) including Alzheimer's disease ({AD}) patients and control subjects.},<br /> pages = {72–77},<br /> number = {1},<br /> journaltitle = {Neurocomput.},<br /> author = {Chyzhyk, Darya and Graña, Manuel and Savio, Alexandre and Maiora, Josu},<br /> urldate = {2014-07-12},<br /> date = {2012-01},<br /> note = {00024},<br /> keywords = {Alzheimer's disease, Dendritic computing, Kernel method, Lattice computing, Lattice Independent Component Analysis}<br /> }<br /> <br /> @article{grana_computer_2011,<br /> title = {Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation},<br /> volume = {502},<br /> issn = {0304-3940},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0304394011011268},<br /> doi = {10.1016/j.neulet.2011.07.049},<br /> abstract = {The aim of this paper is to obtain discriminant features from two scalar measures of Diffusion Tensor Imaging ({DTI}) data, Fractional Anisotropy ({FA}) and Mean Diffusivity ({MD}), and to train and test classifiers able to discriminate Alzheimer's Disease ({AD}) patients from controls on the basis of features extracted from the {FA} or {MD} volumes. In this study, support vector machine ({SVM}) classifier was trained and tested on {FA} and {MD} data. Feature selection is done computing the Pearson's correlation between {FA} or {MD} values at voxel site across subjects and the indicative variable specifying the subject class. Voxel sites with high absolute correlation are selected for feature extraction. Results are obtained over an on-going study in Hospital de Santiago Apostol collecting anatomical T1-weighted {MRI} volumes and {DTI} data from healthy control subjects and {AD} patients. {FA} features and a linear {SVM} classifier achieve perfect accuracy, sensitivity and specificity in several cross-validation studies, supporting the usefulness of {DTI}-derived features as an image-marker for {AD} and to the feasibility of building Computer Aided Diagnosis systems for {AD} based on them.},<br /> pages = {225-229},<br /> number = {3},<br /> journaltitle = {Neuroscience Letters},<br /> shortjournal = {Neuroscience Letters},<br /> author = {Graña, M. and Termenon, M. and Savio, A. and Gonzalez-Pinto, A. and Echeveste, J. and Pérez, J. M. and Besga, A.},<br /> urldate = {2014-07-12},<br /> date = {2011-09-20},<br /> note = {00000},<br /> keywords = {Alzheimer's disease, Classification, Diffusion tensor imaging ({DTI}), Feature selection, Fractional anisotropy, image registration, Mean diffusivity, support vector machines},<br /> file = {ScienceDirect Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/QT6E79J5/S0304394011011268.html:text/html}<br /> }<br /> <br /> @article{savio_neurocognitive_2011,<br /> title = {Neurocognitive disorder detection based on feature vectors extracted from {VBM} analysis of structural {MRI}},<br /> volume = {41},<br /> issn = {1879-0534},<br /> doi = {10.1016/j.compbiomed.2011.05.010},<br /> abstract = {Dementia is a growing concern due to the aging process of the western societies. Non-invasive detection is therefore a high priority research endeavor. In this paper we report results of classification systems applied to the feature vectors obtained by a feature extraction method computed on structural magnetic resonance imaging ({sMRI}) volumes for the detection of two neurological disorders with cognitive impairment: myotonic dystrophy of type 1 ({MD}1) and Alzheimer disease ({AD}). The feature extraction process is based on the voxel clusters detected by voxel-based morphometry ({VBM}) analysis of {sMRI} upon a set of patient and control subjects. This feature extraction process is specific for each kind of disease and is grounded on the findings obtained by medical experts. The 10-fold cross-validation results of several statistical and neural network based classification algorithms trained and tested on these features show high specificity and moderate sensitivity of the classifiers, suggesting that the approach is better suited for rejecting than for detecting early stages of the diseases.},<br /> pages = {600-610},<br /> number = {8},<br /> journaltitle = {Computers in Biology and Medicine},<br /> shortjournal = {Comput. Biol. Med.},<br /> author = {Savio, A. and García-Sebastián, M. T. and Chyzyk, D. and Hernandez, C. and Graña, M. and Sistiaga, A. and de Munain, A. López and Villanúa, J.},<br /> date = {2011-08},<br /> note = {00023 {PMID}: 21621760},<br /> keywords = {Adult, Algorithms, Alzheimer Disease, Brain, Cluster Analysis, Female, Humans, Image Processing, Computer-Assisted, magnetic resonance imaging, Male, Middle Aged, Myotonic Dystrophy, Neural Networks (Computer), Reproducibility of Results}<br /> }<br /> <br /> @article{grana_lattice_2010,<br /> title = {A lattice computing approach for on-line {fMRI} analysis},<br /> volume = {28},<br /> issn = {0262-8856},<br /> url = {http://www.sciencedirect.com/science/article/pii/S0262885609002182},<br /> doi = {10.1016/j.imavis.2009.10.004},<br /> series = {Online pattern recognition and machine learning techniques for computer-vision: Theory and applications},<br /> abstract = {We introduce an approach to {fMRI} analysis based on the Endmember Induction Heuristic Algorithm ({EIHA}). This algorithm uses the Lattice Associative Memory ({LAM}) to detect Lattice Independent vectors, which can be assumed to be Affine Independent, and therefore candidates to be the endmembers of the data. Induced endmembers are used to compute the activation levels of voxels as result of an unmixing process. The endmembers correspond to diverse activation patterns, one of these activation patterns corresponds to the resting state of the neuronal tissue. The on-line working of the algorithm does not need neither a previous training process nor a priori models of the data. Results on a case study compare with the results given by the state of art {SPM} software.},<br /> pages = {1155-1161},<br /> number = {7},<br /> journaltitle = {Image and Vision Computing},<br /> shortjournal = {Image and Vision Computing},<br /> author = {Graña, Manuel and Savio, Alexandre M. and García-Sebastián, Maite and Fernandez, Elsa},<br /> urldate = {2014-07-12},<br /> date = {2010-07},<br /> note = {00023},<br /> keywords = {{fMRI}, Lattice Associative Memories, Lattice computing, Linear mixing model},<br /> file = {ScienceDirect Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/IXT3UEDV/S0262885609002182.html:text/html}<br /> }<br /> <br /> @incollection{chyzyk_comparison_2010,<br /> title = {A Comparison of {VBM} Results by {SPM}, {ICA} and {LICA}},<br /> rights = {©2010 Springer-Verlag Berlin Heidelberg},<br /> isbn = {978-3-642-13802-7, 978-3-642-13803-4},<br /> url = {http://link.springer.com/chapter/10.1007/978-3-642-13803-4_53},<br /> series = {Lecture Notes in Computer Science},<br /> abstract = {Lattice Independent Component Analysis ({LICA}) approach consists of a detection of independent vectors in the morphological or lattice theoretic sense that are the basis for a linear decomposition of the data. We apply it in this paper to a Voxel Based Morphometry ({VBM}) study on Alzheimer’s disease ({AD}) patients extracted from a well known public database. The approach is compared to {SPM} and Independent Component Analysis results.},<br /> pages = {429-435},<br /> number = {6077},<br /> booktitle = {Hybrid Artificial Intelligence Systems},<br /> publisher = {Springer Berlin Heidelberg},<br /> author = {Chyzyk, Darya and Termenon, Maite and Savio, Alexandre},<br /> editor = {Corchado, Emilio and Romay, Manuel Graña and Savio, Alexandre Manhaes},<br /> urldate = {2014-07-12},<br /> date = {2010-01-01},<br /> langid = {english},<br /> note = {00002},<br /> keywords = {Algorithm Analysis and Problem Complexity, Artificial Intelligence (incl. Robotics), Computation by Abstract Devices, Database Management, Information Storage and Retrieval, Information Systems Applications (incl.Internet)},<br /> file = {Snapshot:/home/alexandre/Dropbox/Documents/zotero/storage/SDRST9QG/10.html:text/html}<br /> }</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16881 2014-07-12T19:19:57Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Alexsavio own bibLatex]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16879 2014-07-12T18:22:57Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. JCR (2012) 1.634 (T1, Q2 CSAI) [http://www.sciencedirect.com/science/article/pii/S0925231213010096 link]<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16827 2014-06-14T17:29:28Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16825 2014-06-14T17:24:24Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16823 2014-06-14T17:24:09Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: Experiments of Machine Learning for Neurodiagnosis. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16821 2014-06-14T17:23:54Z

<p>Alexsavio: /* Alexandre Manhães Savio */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * PhD Thesis: Experiments of Machine Learning for Neurodiagnosis. Director: Prof. Manuel Graña Romay. 08/Nov/2013<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16819 2014-06-14T16:36:23Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16817 2014-06-14T16:34:44Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13]<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16815 2014-06-14T16:31:56Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> :- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos; ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data''; Neurocomputing (in press)<br /> <br /> <br /> :- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró; ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study''; Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]; Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013).<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16813 2014-06-14T16:28:36Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> ;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br /> :A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data<br /> : Neurocomputing (in press)<br /> <br /> <br /> ;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br /> :Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br /> : Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br /> : Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine &amp; Medical Imaging); 23/252 (Neurosciences)<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013).<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Usuario:Alexsavio&diff=16761 2014-06-03T22:41:33Z

<p>Alexsavio: /* Publications */</p> <hr /> <div>[[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]]<br /> <br /> [[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]]<br /> <br /> * Contact: [[Imagen:Alex email.png]]<br /> <br /> * My PGP key: [[alexsavio_pgp.key]]<br /> <br /> <br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Material]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]<br /> <br /> [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=382 Pedradas]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)]<br /> <br /> [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions]<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Alexandre Manhães Savio ==<br /> <br /> &lt;h3&gt;<br /> Studies<br /> &lt;/h3&gt;<br /> <br /> * Information Engineer (October 2006) - University of the Basque Country<br /> <br /> * PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.<br /> : [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]]<br /> : [[Imagen:Cover_small.png | 200px]]<br /> : [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Work Experience<br /> &lt;/h3&gt;<br /> <br /> * February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country<br /> :MR image processing and application of classification algorithms for the detection of brain neuronal disorders.<br /> <br /> * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.<br /> :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB<br /> <br /> * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.<br /> :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration<br /> <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Courses<br /> &lt;/h3&gt;<br /> * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona.<br /> <br /> * July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course]<br /> <br /> * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg &amp; Würzburg Universities in Heidelberg, Germany. <br /> &lt;br/&gt;<br /> <br /> &lt;h3&gt;<br /> Internships<br /> &lt;/h3&gt;<br /> * January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&amp;stick diffusion models for multishell HARDI and model selection.<br /> &lt;br/&gt;<br /> <br /> == Software ==<br /> <br /> * [https://github.com/alexsavio/macuto Macuto]: a Python module with basic but useful functions and also MRI Analysis and Classification Tools.<br /> <br /> * [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]]<br /> <br /> * [https://github.com/alexsavio My github homepage]<br /> <br /> * [http://alexsavio.github.io/ Interlines] (my blog)<br /> <br /> * 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]]<br /> <br /> * Copies of some software in my GitHub account:<br /> <br /> '' [[Media:Visualize_volume-master.zip | visualize_volume]]<br /> <br /> '' [[Media:Oasis_aal-master.zip | OASIS_AAL]]<br /> <br /> '' [[Media:Oasis_feets-master.zip | OASIS_feets]]<br /> <br /> == Publications ==<br /> [[Media:Alexsavio_references.bib.zip | BibTex File]]<br /> <br /> [[GIC-experimental-databases | Post-processed datasets from the work done in the group.]]<br /> <br /> &lt;h3&gt;<br /> 2014<br /> &lt;/h3&gt;<br /> <br /> :- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio; ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio &amp; Manuel Graña; ''Brain Cloud Computing: Brain image pre-processing made easy and boring'', Neurogune 14, San Sebastián, Spain.<br /> <br /> :- Alexandre Savio, Darya Chyzhyk, Manuel Graña; ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'', 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4<br /> <br /> &lt;h3&gt;<br /> 2013<br /> &lt;/h3&gt;<br /> :- [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf‎ | Dissertation slides]]<br /> <br /> :- Borja Ayerdi, Alexandre Savio, Manuel Graña; ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'', J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013).<br /> :- Alexandre Savio, Manuel Graña; ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'', I. Rojas, G. Joya, and J. Cabestany (Eds.): IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Graña; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' Neurocomputing (in press); JCR (2012) 1.634 (T1, Q2 CSAI)<br /> <br /> <br /> &lt;h3&gt;<br /> 2012<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Manuel Graña; ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'', Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI)<br /> <br /> :- Darya Chyzhyk, Alexandre Savio and Manuel Grana; ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'', ELM 2012<br /> <br /> :- Alexandre Savio, Manuel Graña; ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database''; Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]]<br /> <br /> :- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'', Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204<br /> <br /> :- A. Bourisly, A. Savio, M. Graña; ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease''. OHBM 2012. June 10-14, 2012 Beijing, China<br /> <br /> :- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora; ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'', Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br /> <br /> &lt;h3&gt;<br /> 2011<br /> &lt;/h3&gt;<br /> <br /> :- A. Savio, A. Bourisly, M. Graña; ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'', ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany <br /> :*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] <br /> :*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]]<br /> <br /> :- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'', Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 <br /> <br /> :- Alexandre Savio, Manuel Graña, Jorge Villanúa, ''Deformation based features for Alzheimer's disease detection with linear SVM.''; [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> :* [[media:ASavio-HAIS-2011.pdf |draft]]<br /> :* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]]<br /> <br /> &lt;h3&gt;<br /> 2010<br /> &lt;/h3&gt;<br /> :- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'', Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269<br /> :* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data''; Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 <br /> :* [[media:slides_schizophrenia_dti_nnw.pdf | slides]]<br /> :* [[media:schizophrenia_dti_nnw.pdf | draft]]<br /> : Data: <br /> ::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3]<br /> ::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks]<br /> ::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors]<br /> ::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database.<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers<br /> <br /> :- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández; ''A Lattice Computing approach for On-line fMRI analysis''; Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br /> <br /> :- Darya Chyzhyk, Maite Termenón, Alexandre Savio; ''A Comparison of VBM Results by SPM, ICA and LICA''; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53]<br /> <br /> &lt;h3&gt;<br /> 2009<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI''; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120]<br /> :*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI''; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13]<br /> :[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> :- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection''; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78]<br /> :[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]]<br /> :&lt;b&gt;Data:&lt;/b&gt;<br /> :[[GIC-experimental-databases/OASIS_VBM_feature_vectors]]<br /> :[[List of 98 OASIS females]]<br /> <br /> &lt;h3&gt;<br /> 2008<br /> &lt;/h3&gt;<br /> :- Maite García-Sebastián, A. M. Savio, M. Graña; ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm''; [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&amp;arnumber=4631363&amp;isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0<br /> <br /> :- Alexandre Manhaes Savio; ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08''; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1<br /> :[[Media:LibroPresentacionesVerona.pdf | slides_book]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Projects ==<br /> <br /> === XXIV Premio Toribio Echeverria ===<br /> * Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio &quot;Ideas/Proyectos Empresariales&quot; 2014 &quot;Empresa Asmoak&quot; Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]]<br /> <br /> <br /> === Segundo Premio Laborde Werlinden XIII ===<br /> * Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]]<br /> <br /> <br /> === MICINN Imagenes Medicas ===<br /> <br /> *Investigador Principal: Manuel Graña<br /> * Participantes: <br /> ** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos<br /> ** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, <br /> ** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)<br /> ** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola<br /> ** Ikerbasque: Amaury Lendasse<br /> ** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner<br /> * duración: 2011-2013<br /> * Type of participation: member of the research group<br /> <br /> <br /> === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] ===<br /> * Investigador Principal: Manuel Graña<br /> * Acronimo SOFLIMRI<br /> *Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas<br /> *Importe de la subvención: 32000 euros<br /> *Duracion: 2009-2010<br /> * [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]]<br /> * Type of participation: member of the research group<br /> <br /> <br /> * Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] <br /> <br /> &lt;br/&gt;<br /> <br /> == Research Areas ==<br /> * Pattern recognition applied to medical images<br /> * Brain medical image processing<br /> * Gesture recognition systems<br /> <br /> &lt;br/&gt;<br /> <br /> == Research Questions ==<br /> <br /> * How does the multivariate tensor analysis work using all the deformation tensor information?<br /> <br /> * Is there any SOM-based framework for diffusion data modelling?<br /> <br /> * Any application of Lattice-Computing on Probabilistic Tractography?<br /> <br /> &lt;br/&gt;<br /> <br /> == Pending Tasks ==<br /> * ITK, ANTS...<br /> * OpenMP and MPI<br /> * Multivariate Analysis<br /> * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]<br /> * DTI modeling<br /> * Process Ann's DTI dataset<br /> * Add MRI and ML related info pages with literature reviews on this wiki.<br /> <br /> &lt;br/&gt;<br /> <br /> === articulos de revistas en proceso de redacción ===<br /> <br /> * rsfMRI scalar measures and CAD<br /> * rsfMRI connectivity matrices and CAD<br /> <br /> === conferencias en el horno ===<br /> <br /> == Conferences ==<br /> <br /> '''&quot;I love deadlines. I especially like the whooshing sound they make as they go flying by.&quot; - Douglas Adams'''<br /> <br /> &lt;br/&gt;<br /> <br /> '''Coming...'''<br /> <br /> <br /> &lt;br/&gt;<br /> <br /> <br /> <br /> == Current readings ==<br /> <br /> &lt;h3&gt;Books&lt;/h3&gt;<br /> <br /> * [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2 Human Brain Function 2nd edition] - J Ashburner, K Friston and W Penny [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=180 PDF completo]<br /> <br /> * [http://www.amazon.com/Medical-Image-Registration-Biomedical-Engineering/dp/0849300649 Medical Image Registration] - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)<br /> <br /> * [http://citeseer.ist.psu.edu/unser99splines.html Splines - A perfect Fit for Signal and Image Processing]<br /> <br /> * [http://www.amazon.com/Insight-into-Images-Segmentation-Registration/dp/1568812175 Insight Into Images]<br /> <br /> * [http://www.amazon.co.uk/Numerical-Registration-Mathematics-Scientific-Computation/dp/0198528418/ref=sr_1_1?ie=UTF8&amp;s=books&amp;qid=1241451652&amp;sr=8-1 Numerical Methods for Image Registration] - [http://www2.imm.dtu.dk/itman/phdmedimreg.html]<br /> <br /> @book{mcconnell_applications_1960,<br /> title = {Applications of Tensor Analysis},<br /> isbn = {0486603733},<br /> publisher = {Dover Publications},<br /> author = {A. J. {McConnell}},<br /> month = jun,<br /> year = {1960}<br /> }<br /> <br /> &lt;h3&gt;Working articles&lt;/h3&gt;<br /> <br /> * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Working Diaries]<br /> <br /> &lt;br/&gt;<br /> <br /> == Congresos y revistas objetivo ==<br /> <br /> === Revistas (ordenadas por factor de impacto) ===<br /> <br /> 1- [http://www3.interscience.wiley.com/journal/10005199/home Journal of Magnetic Resonance Imaging]<br /> <br /> 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis]<br /> <br /> 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging]<br /> <br /> 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine]<br /> <br /> === Otras revistas ===<br /> <br /> * [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage]<br /> <br /> * [http://www.cars-int.org Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics]<br /> <br /> * [http://insight-journal.org Insight Journal]<br /> <br /> * [http://www.midasjournal.org Midas Journal]<br /> <br /> * [http://www.biij.org Biomedical Imaging and Intervention Journal]<br /> <br /> * [http://brain.oxfordjournals.org/ Brain]<br /> <br /> * [http://www.springerlink.com/content/xg267307357q/?p=6be0a6dc3f7245debd0b21fc4aa7365b&amp;pi=0 Neural Computing and Applications]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/939/description#description Expert Systems and Applications]<br /> <br /> * [http://scitation.aip.org/EL Electronics Letters]<br /> <br /> * [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&amp;punumber=10 IEEE Transactions on Biomedical Engineering]<br /> <br /> * [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine]<br /> <br /> * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems]<br /> <br /> * [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters]<br /> <br /> === Congresos ===<br /> <br /> * [http://www.miccai.org/ MICCAI Society]<br /> <br /> * [http://www.biostec.org BIOSTEC]<br /> <br /> * [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM]<br /> <br /> * [http://spie.org/medical-imaging.xml SPIE Medical Imaging]<br /> <br /> * [http://www.cars-int.org/ Computer Assisted Radiology and Surgery]<br /> <br /> * [http://www.humanbrainmapping.org Human Brain Mapping]<br /> <br /> * [http://www.mie2009.org Medical Informatics Europe Conference]<br /> <br /> * [http://www.wbir2010.org WBIR] WBIR 2010<br /> <br /> * [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging]<br /> <br /> * More conferences: [http://www.isi.uu.nl/Conferences/]<br /> <br /> &lt;br/&gt;<br /> <br /> == Internet Bookmarks ==<br /> <br /> * [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach CBU Imaging Wiki]<br /> <br /> * [http://www.youtube.com/kitware Kitware Youtube Channel]<br /> <br /> * [http://lib.bioinfo.pl BioInfoBank Library]<br /> <br /> * [http://www.mindboggle.info MindBoggle - A Project for Human Brain Labeling]<br /> <br /> * [[Media:SupplementaryMaterial_Klein_NeuroImage2009.pdf | Supplementary Material Document from Klein NeuroImage 2009]]<br /> <br /> * [http://www.eigenfactor.org/ eigenfactor.org - ranking and mapping scientific knowledge]<br /> <br /> * [http://neuro.debian.net/ Debian Neuroscience Repository]<br /> <br /> === Courses ===<br /> <br /> * [http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2006/CourseHome/index.htm Functional Magnetic Resonance Imaging: Data Acquisition and Analysis - MIT OpenCourseWare]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Direcciones_y_datos_de_inter%C3%A9s#Cursos_de_formaci.C3.B3n Cursos de formación]<br /> <br /> * [http://matg6.uniovi.es/Master2/presentacion2.html Master en Iniciación a la Investigación en Matemáticas]<br /> <br /> === Databases ===<br /> <br /> * [http://www.oasis-brains.org OASIS]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]<br /> <br /> * [http://adni.loni.ucla.edu/ ADNI]<br /> <br /> * [http://www.nitrc.org/projects/brainmap BrainMap]<br /> <br /> * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]<br /> <br /> * [http://insight-journal.org/midas MIDAS]<br /> <br /> * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]<br /> <br /> * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]<br /> <br /> === Research Groups ===<br /> <br /> * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England<br /> <br /> * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building<br /> <br /> * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany<br /> <br /> * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania<br /> <br /> * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]<br /> <br /> * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón<br /> <br /> * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University<br /> <br /> * [http://www.na-mic.org/ National Alliance for Medical Image Computing]<br /> <br /> * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis<br /> <br /> * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis<br /> <br /> * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich<br /> <br /> * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam<br /> <br /> * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology<br /> <br /> * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC<br /> <br /> * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil<br /> <br /> &lt;br/&gt;<br /> <br /> == Utilities ==<br /> <br /> === Scientific Writing ===<br /> <br /> * [[Media:How_to_write_a_good_introduction.pdf | Chapter &quot;How to Write an Introduction&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )<br /> <br /> * [[Media:Writing_about_methodology.pdf | Chapter &quot;Writing about methodology&quot; of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]<br /> <br /> * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]<br /> <br /> === Computer Settings ===<br /> <br /> * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]<br /> <br /> * [[SPIE LaTEX manuscript templates and writing guidelines]]<br /> <br /> * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]<br /> <br /> * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]<br /> <br /> * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)<br /> <br /> * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]<br /> <br /> * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]<br /> <br /> * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]<br /> <br /> * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]<br /> <br /> * [http://neuro.debian.net/ Página de instalación de FSL en Debian]<br /> <br /> * [[Setting up FSL to use a SunGridEngine or computing cluster]]<br /> <br /> * [[How to install Springer LNCS Style for Lyx]]<br /> <br /> * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]<br /> <br /> * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]<br /> <br /> * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]<br /> <br /> * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]<br /> <br /> === Image Processing ===<br /> <br /> * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]<br /> <br /> * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]<br /> <br /> * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]<br /> <br /> * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]<br /> <br /> * [[Statistical Parametric Mapping]]<br /> <br /> * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]<br /> <br /> * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]<br /> <br /> * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]<br /> <br /> * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]<br /> <br /> * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]<br /> <br /> * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]<br /> <br /> * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]<br /> <br /> * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]<br /> <br /> * [http://www.parallelpython.com Parallel Python for parallel processing]<br /> <br /> * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]<br /> <br /> * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&amp;i=2066&amp;t=1278&amp;v=f Preprocessing steps for SPM Analyze images to use them on FSL]<br /> <br /> * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]<br /> <br /> * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]<br /> <br /> * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]<br /> <br /> === Pattern Recognition ===<br /> <br /> * [[alexsavio_scripts | My scripts]]<br /> <br /> * [[Wiki Weka | Weka How Tos]]<br /> <br /> * [[Matrices de confusión y otros valores estadísticos]]<br /> <br /> * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]<br /> <br /> * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]<br /> <br /> * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]<br /> <br /> * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]<br /> <br /> * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]<br /> <br /> * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)<br /> <br /> === Real World ===<br /> <br /> * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]<br /> <br /> * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]<br /> <br /> * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de &quot;ciencia abierta&quot; en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )<br /> <br /> * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]<br /> <br /> * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]<br /> <br /> * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]<br /> <br /> * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]<br /> <br /> * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]<br /> <br /> * [[fotos-veganzones | Miguel's Photo gallery]]<br /> <br /> &lt;br/&gt;<br /> <br /> == Estado burocrático de la tesis ==<br /> <br /> ; Director: Manuel Graña<br /> <br /> ; Trabajo de investigación aprobado.<br /> <br /> ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]]<br /> <br /> ; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).<br /> <br /> &lt;br/&gt;<br /> <br /> == Working Diaries ==<br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=328 Pedradas de Alex]<br /> <br /> ;; [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&amp;art_id=422 Seguimientos]</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Cap%C3%AD%C2%ADtulos_de_Libro&diff=16759 2014-06-03T21:54:04Z

<p>Alexsavio: /* 2014 */</p> <hr /> <div>== enviados ==<br /> <br /> ==2014==<br /> <br /> ;Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> :Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br /> :International Conference on Hybrid Artificial Intelligence Systems HAIS 14, Salamanca, Spain.<br /> <br /> ==2013==<br /> <br /> <br /> <br /> ;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, Manuel Graña<br /> :Empirical Study of the Sensitivity of CACLA to Sub-optimal Parameter Setting in Learning Feedback Controllers<br /> :International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 101-108, Springer<br /> : DOI 10.1007/978-3-319-01854-6_11<br /> <br /> ;Jose Manuel López-Guede, Jose Antonio Ramos-Hernanz, Manuel Graña <br /> : Artificial Neural Network Modeling of a Photovoltaic Module<br /> : International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 389-397<br /> : DOI 10.1007/978-3-319-01854-6_40<br /> : ISBN 978-3-319-01853-9<br /> <br /> <br /> ;Grana, M. ; Rebollo, I. <br /> : Instances of subconscious social intelligent computing<br /> : Computational Aspects of Social Networks (CASoN), 2013 Fifth International Conference on, 2013 , Page(s): 74 - 78<br /> : Digital Object Identifier: 10.1109/CASoN.2013.6622604 <br /> <br /> ;Grana, M. ; Rebollo, I. <br /> :Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem<br /> :Nature and Biologically Inspired Computing (NaBIC), 2013 World Congress on <br /> :Digital Object Identifier: 10.1109/NaBIC.2013.6617846 <br /> :Publication Year: 2013 , Page(s): 107 - 112<br /> <br /> <br /> ;M. Graña<br /> :Subconscious Social Computational Intelligence<br /> :Computational Intelligence, Cyber Security and Computational Models, Proceedings of ICC3, 2013 G. Sai Sundara Krishnan, R. Anitha, R. S. Lekshmi, M. Senthil Kumar, Anthony Bonato and Manuel Graña (eds) Advances in Intelligent Systems and Computing 246, Springer India 2014, Pages 15-21<br /> : ISBN: 978-81-322-1679-7 (Print) 978-81-322-1680-3 (Online)<br /> <br /> ; Darya Chyzhyk, Manuel Graña<br /> : Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br /> : Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br /> : Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br /> : DOI 10.1007/978-3-642-42017-7_10<br /> : Print ISBN 978-3-642-42016-0<br /> : Online ISBN 978-3-642-42017-7<br /> : Series ISSN 1865-0929<br /> <br /> ;Manuel Graña, Ion Marqués, Alexandre Savio, Bruno Apolloni,<br /> :A domestic application of Intelligent Social Computing: the SandS project <br /> : International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, A Herero et al. (eds) pp 221-228<br /> : Springer Verlag, Advances in Intelligent Systems and Computing, 239<br /> : ISBN 978-3-319-01853-9<br /> : DOI 10.1007/978-3-319-01854-6_23<br /> <br /> ; Manuel Graña, J. David Nuñez-Gonzalez, Bruno Apolloni<br /> : A discussion on trust requirements for a social network of eahoukers [http://link.springer.com/chapter/10.1007/978-3-642-40846-5_54]<br /> : J.-S. Pan et al. (Eds.): Hybrid Artificial Intelligent Systems HAIS 2013 Proceedings, LNAI 8073, pp. 540--547. Springer, Heidelberg (2013)<br /> :ISBN: 978-3-642-40845-8 (Print) 978-3-642-40846-5 (Online)<br /> <br /> ; Darya Chyzhyk and Manuel Graña<br /> : Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features<br /> : J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br /> : ISSN: 0302-9743 DOI 10.1007/978-3-642-40846-5_48<br /> <br /> ; M. Termenon, M. Graña, A. Besga, J. Echeveste, J. M. Pérez and A. M. Gonzalez-Pinto<br /> : Diagnosis of Bipolar Disorder based on Principal Component Analysis and Support Vector Machines over the MRI deformation Jacobian<br /> : Proceedings of the 8th International Conference on Computer Recognition Systems CORES 2013<br /> : Advances in Intelligent Systems and Computing Volume 226, 2013, pp 569-578<br /> : Print ISBN: 978-3-319-00968-1, Online ISBN: 978-3-319-00969-8<br /> : ISSN 2194-5357<br /> <br /> ;M. Graña, B. Apolloni, M. Fiasché, G. Galliani, C. Zizzo, G. Caridakis, G. Siolas, S. Kollias, F. Barriento, S. San Jose<br /> : Social and Smart: towards an instance of subconscious social intelligence [http://link.springer.com/chapter/10.1007/978-3-642-41016-1_32]<br /> : Proceedings IPMSC 2013 [http://delab.csd.auth.gr/eann2013/workshops.php?workshop_id=3]<br /> : L. Iliadis, H. Papadopoulos, and C. Jayne (Eds.): EANN 2013, Part II, CCIS 384, pp. 302–311, 2013<br /> : Springer<br /> : ISBN: 978-3-642-41015-4 (Print) 978-3-642-41016-1 (Online)<br /> <br /> ;Israel Rebollo, Manuel Graña<br /> : User assistance tool for a WebService ERP [http://link.springer.com/chapter/10.1007/978-3-319-00563-8_24]<br /> : Trends in Practical Applications of Agents and Multiagent Systems, Javier Bajo Perez et al. (eds.), Advances in Intelligent Systems and Computing Volume 221, 2013, pp 193-200<br /> : Springer <br /> : SBN: 978-3-319-00562-1 (Print) 978-3-319-00563-8 (Online)<br /> <br /> ;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, and Manuel Graña<br /> :An Empirical Study of Actor-Critic Methods for Feedback Controllers of Ball-Screw Drivers<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 441--450. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; Ion Marques and Manuel Graña<br /> :Greedy Sparsification WM Algorithm for Endmember Induction in Hyperspectral Images<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 336--344. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; Jose Manuel Lopez-Guede, Manuel Graña, Jose Antonio Ramos-Hernanz, and Fernando Oterino<br /> :A Neural Network Approximation of L-MCRS Dynamics for Reinforcement Learning Experiments<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 317--325. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br /> : Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br /> : ISSN 0302-9743<br /> <br /> ; Darya Chyzhyk and Manuel Graña<br /> : Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br /> : ISSN 0302-9743<br /> <br /> ;Borja Ayerdi, Alexandre Savio, and Manuel Graña<br /> :Meta-ensembles of Classifiers for Alzheimer's Disease Detection Using Independent ROI Features<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122--130. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; B. Apolloni, M. Fiasche, G. Galliani, C. Zizzo, G. Caridakis, G. Siola, S. Kollia, M. Grana Romay, F. Barriento, S. San Jose<br /> :Social Things - The SandS instantiation<br /> : IoT-SoS 2013<br /> : ISBN<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107--114. Springer, Heidelberg (2013)<br /> : Eds.: I. Rojas, G. Joya, and J. Cabestany<br /> : [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> <br /> ; Ramon Moreno, Manuel Graña and Kurosh Madani<br /> : ''A robust color Watershed transformation and image segmentation defined on RGB Spherical Coordinates''<br /> : Robotic Vision: Technologies for Machine Learning and Vision Applications, pp112-128 <br /> : doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br /> <br /> ; J.M. Lopez-Guede, B. Fernandez-Gauna, R. Moreno and M. Graña,<br /> : ''Visual Detection in Linked Multi-Component Robotic Systems''<br /> : Robotic Vision: Technologies for Machine Learning and Vision Applications. pp78-97<br /> : doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br /> <br /> ==2012==<br /> ; Manuel Graña, Darya Chyzhyk<br /> : Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br /> : HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br /> : Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br /> : DOI: 10.1109/HIS.2012.6421391 <br /> : Print ISBN: 978-1-4673-5114-0<br /> <br /> ;Miguel A. Veganzones, Mihai Datcu, Manuel Graña.<br /> : &quot;Relevance feedback by dissimilarity spaces for hyperspectral CBIR.&quot; <br /> : [http://bookshop.europa.eu/is-bin/INTERSHOP.enfinity/WFS/EU-Bookshop-Site/en_GB/-/EUR/ViewPublication-Start?PublicationKey=LBNA25514 Proceedings of the ESA-EUSC-JRC 8th conference on image information mining, Knowledge discovery from earth observation data]. Edited by P. Soille, M. Iapaolo, P.G. Marchetti, and M. Datcu. European Comission. Pages: 1-5. 2012.<br /> : ISBN: 978-92-79-26419-1 ISSN: 1831-9424 DOI: 10.2788/49465<br /> <br /> ;V. Amarger, D. M. Ramík, C. Sabourin, K. Madani, R. Moreno, L. Rossi, M. Graña, <br /> :&quot;Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation: Application to Wildland Fires’ Outlines Extraction&quot;, <br /> :Proceedings of International conference on Image Processing Theory, Tools and Applications (IEEE-IPTA 2012), Istanbul, Turkey, October 15 - 18, pp. 19-24, 2012. [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/275/IPTA-2012-Paper-299-Final-PDF.pdf]<br /> :ISBN: 978-1-4673-2582-0<br /> <br /> ; Israel Rebollo and Manuel Graña<br /> : Dynamic Tabu Search for Non Stationary Social Network identification based on Graph Coloring<br /> : [http://www.springer.com/engineering/computational+intelligence+and+complexity/book/978-3-642-32921-0 Advances in Intelligent Systems and Computing][[media: israel_SOCO2012.pdf|Slides]]<br /> : Soft Computing Models in Industrial and Enviromental Applications, Vol. 188, pages 495 - 503, 2012.<br /> : Eds: Václav Snásel, Ajith Abraham and Emilio S. Corchado.<br /> : ISBN: 978-3-642-32921-0<br /> <br /> ; Alexandre Savio<br /> : Supervised classification using deformation-based features for Alzheimer’s disease detection on the OASIS cross-sectional database <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Eduardo Carrasco, Frank Guijarro<br /> : A Semantic Clinical Decision Support System: conceptual architecture and implementation guidelines<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1390 - 1399, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; G. García, J. Maiora, A. Tapia, M. De Blas<br /> : Computer-aided Diagnosis of Abdominal Aortic Aneurysm after Endovascular Repair Using Texture Analysis<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 716-725, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Darya Chyzhyk<br /> : Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Iñigo Barandiaran, John Congote, Jon Goenetxea, Oscar Ruiz<br /> : Evaluation of interest point detectors for image information extraction<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2170 - 2179, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Ramón Moreno, Alicia d'Anjou<br /> : Hyperspectral Image Segmentation by t-Watershed and Hyperspherical Coordinates<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2114 - 2121, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ekaitz Zulueta<br /> : Towards a real time simulation of Linked Multi-Component Robotic Systems<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2019 - 2027, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Iñigo Barandiaran, Grégory Maclair, Izaro Goienetxea, Carlos Jauquicoa, Manuel Graña<br /> : A Comparative Study of Classifier Ensembles for Karyotyping<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1400 - 1407, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; M. Termenon, E. Fernández, A. Barrós-Loscertales, J.C. Bustamante, C. Ávila<br /> : Impact of Analysis Circularity: a Case Study in Cocaine Addiction detection on MRI<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2201 - 2209, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbicki, Manuel Graña, Jorge Posada<br /> : Speed-up of a Knowledge-Based Clinical Diagnosis System using Reflexive Ontologies <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1480 - 1489, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Manuel Graña, Adrian Agreda<br /> : Trust in communication and multiagent systems <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 816 - 822, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Miguel A. Veganzones<br /> : On hyperspectral morphology by lattice auto-associative memories supervised orderings<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2122-2129, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. <br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ramon Moreno, Manuel Graña<br /> : &quot;Visual Detection in Linked Multi-Component Robotic Systems&quot;<br /> : Published in: &quot;Robotic Vision: Technologies for Machine Learning and Vision Applications&quot;<br /> : Eds: Miguel Cazorla and Jose Garcia. IGI Global. <br /> : ISBN:<br /> <br /> ; M. Termenon, M. Graña, A. Barrós-Loscertales, J. C. Bustamante, C. Ávila.<br /> : &quot;Cocaine Dependent Classification using Brain Magnetic Resonance Imaging&quot; [http://www.springerlink.com/content/k54353335gx22208/]<br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAISTermenon2012_Presentacion.pdf|Slides]]<br /> : HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 448-454, 2012. LNCS 7209 <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Ion Marqués and Manuel Graña<br /> : &quot;Image Security and Biometrics: A Review&quot; [http://dx.doi.org/10.1007/978-3-642-28931-6_42 Doi] [[media:Hais survey 03-11-2011.pdf|draft]]<br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012.[[media: imarques-HAIS2012.pdf|Slides]]<br /> : HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 436-447, 2012. LNCS 7209 <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Miguel A. Veganzones and Manuel Graña<br /> : &quot;Hybrid computational methods for hyperspectral image analysis.&quot;<br /> : [http://www.springer.com/computer/ai/book/978-3-642-28930-9 HAIS 2012, Part II, LNCS 7209], pp. 424-435. 2012.<br /> <br /> ; Israel Rebollo, Manuel Graña<br /> : &quot;An empirical comparison of some approximate methods for Graph Coloring&quot; [[media: hais_israel.pdf|draft]] <br /> : Hybrid Artificial Intelligent Systems (HAIS 2012), Salamanca, Spain. March 28-30, 2012. <br /> : Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part I, pp. 600-609, 2012. LNCS 7208 <br /> : DOI: 10.1007/978-3-642-28942-2_54<br /> <br /> ; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br /> : A Novel Lattice Associative Memory Based on Dendritic Computing&quot; [[media: HAIS12-SS11-2169.pdf|draft]] <br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br /> : Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br /> : Series: Lecture Notes in Computer Science, Vol. 7209<br /> : Subseries: Lecture Notes in Artificial Intelligence<br /> : Eds.: Corchado Rodriguez, E.S.; Snasel, V.; Abraham, A.; Wozniak, M.; Grana, M.; Cho, S.-B. <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Miguel A. Veganzones, Mihai Datcu, Manuel Graña<br /> : [[Media:ICPRAM_2012_-_veganzones.pdf | Dictionary based hyperspectral image retrieval]] <br /> : Proceedings of the [http://icpram.org 1st International Conference on Pattern Recognition Applications and Methods], pages 426-432. 2012.<br /> : DOI: 10.5220/0003861904260432<br /> : Copyright SciTePress<br /> <br /> ==2011==<br /> <br /> ; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br /> : Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br /> : 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br /> : Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br /> : Eds: José Manuel Ferrández, F. Javier Toledo, José Ramón Álvarez Sánchez, Félix de la Paz<br /> : Springer-Verlag Berlin, Heidelberg<br /> : ISBN: 978-3-642-21325-0<br /> <br /> ; Israel Rebollo and Manuel Graña.<br /> : &quot;Further results of Gravitational Swarm Intelligence for Graph Coloring&quot; [[media: nabic_israel.pdf|draft]]<br /> : Nature and Biologically Inspired Computing (NaBIC), 2011, Salamanca, Spain. 19-21 Oct. 2011<br /> : DOI: Digital Object Identifier: 10.1109/NaBIC.2011.6089456<br /> : Pages: 183-188<br /> : ISBN 978-1-4577-1122-0<br /> <br /> ; Israel Rebollo and Manuel Graña.<br /> : &quot;Gravitational Swarm Approach for Graph Coloring&quot;[[media: nicso_israel.pdf|draft]]<br /> : Proceedings of the [http://www.nicso2011.org/ NICSO 2011], Cluj-Napoca, Romania. Oct 20-22, 2011.<br /> : Studies in Computational Intelligence, 2011, Volume 387, 159-168, DOI: 10.1007/978-3-642-24094-2 <br /> : D.A. Pelta, N. Krasnogor, D. Dumitrescu, Camelia Chira and R. Lung (eds)<br /> : Publisher: Springer-Verlag Berlin / Heidelberg<br /> : ISBN 978-3-642-24093-5<br /> <br /> ; Maite Termenon, Ariadna Besga, Jon Echeveste, Ana Gonzalez-Pinto and Manuel Graña.<br /> : &quot;Alzheimer Disease Classification on Diffusion Weighted Imaging features&quot;<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6687/2011, 120-127, DOI: 10.1007/978-3-642-21326-7_14 <br /> : José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br /> : ISBN 978-3-642-21325-0<br /> <br /> ; Ion Marqués, Manuel Graña.<br /> : [[Media:iwinac2011_ion.pdf | &quot;Experiments on Lattice Independent Component Analysis for Face Recognition.&quot;]]<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6678, pp.286-294, DOI: [http://dx.doi.org/10.1007/978-3-642-21326-7_31 10.1007/978-3-642-21326-7].<br /> : J. Ferrández, J. Álvarez Sánchez, F. de la Paz and F. Toledo (eds)<br /> : ISBN 978-3-642-21325-0<br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : Deformation based features for Alzheimer's disease detection with linear SVM.; <br /> : Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> <br /> ; Miguel A. Veganzones, Manuel Graña.<br /> : [[Media:Whispers2011_veganzones.pdf | &quot;On the validation of a spectral/spatial CBIR system for hyperspectral images.&quot;]]<br /> : Proceedings of the [http://www.ieee-whispers.com/ 3rd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (IEEE-WHISPERS 2011)]. 2011.<br /> <br /> ; Avid Román-González, Miguel A. Veganzones, Manuel Graña, Mihai Datcu. <br /> : [[Media:esa2011_roman-gonzalez_veganzones.pdf | &quot;A novel data compression technique for remote sensing data mining.&quot;]]<br /> : Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br /> : P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 101-104<br /> : ISBN 978-92-79-19708-6<br /> <br /> ; Miguel A. Veganzones, Manuel Graña<br /> : [[Media:esa2011_veganzones_grana.pdf | &quot;Validation of remote sensing content-based information retrieval (RS-CBIR) systems upon scarce data.&quot;]]<br /> : Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br /> : P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 93-96<br /> : ISBN 978-92-79-19708-6<br /> <br /> ; Miguel A. Veganzones, Manuel Graña<br /> : [[Media:SOCO2011-veganzones-camera_ready.pdf | &quot;Validation of a Hyperspectral Content-Based Information Retrieval (RS-CBIR) System upon scarce data&quot;]]<br /> : Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br /> <br /> ; Darya Chyzhyk, Manuel Graña<br /> : Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br /> : Conference on Soft Computing Models in Industrial and Environmental Applications ([http://soco.usal.es/ SOCO 2011]), Salamanca, Spain. 6-8th April, 2011.<br /> : Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57<br /> : Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-19643-0<br /> <br /> ; Maite Termenon, Manuel Graña<br /> : Further results on Alzheimer Disease Detection on structural MRI features<br /> : Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br /> : Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 515-522, DOI: 10.1007/978-3-642-19644-7_54 <br /> : Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-19643-0<br /> <br /> ;Véronique Amarger, Dominik M. Ramík, Ramon Moreno, Lucile Rossi, Kurosh Madani, Manuel Graña<br /> :&quot;Wildland Fires’ Outlines Extraction a Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation Approach&quot; . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br /> <br /> ;Ramón Moreno, Manuel Graña, Dominik M. Ramík, Kurosh Madani<br /> :&quot;Image Segmentation by Spherical Coordinates&quot; . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> :&quot;A Hybrid Color Distance for Image Segmentation&quot;.Part II, Hybrid Artificial Intelligence Systems LNAI 6679, pp. 447–454, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] ISBN:978-3-642-21218-5<br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br /> : &quot;Empirical Study of Q-Learning Based Elemental Hose Transport Control&quot;.<br /> : Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br /> : Lecture Notes in Computer Science, 2011, Volume 6679/2011, 455-462, DOI: 10.1007/978-3-642-21222-2<br /> : Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21218-5<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> :&quot;A geometrical method of diffuse and specular image components separation&quot;. Advances in Computational Intelligence,Lecture Notes in Computer Science, 2011, Volume 6692/2011, 83-89, Eds:J.Cabestani, I.Rojas and G.Goya. DOI: 10.1007/978-3-642-21498-1_11 ISBN:978-3-642-21497-4<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> : &quot;Concurrent Modular Q-Learning with Local Rewards on Linked Multi-Component Robotic Systems&quot;<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6686/2011, 148-155, DOI: 10.1007/978-3-642-21344-1_16 <br /> : Editors: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21343-4<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> : &quot;Towards concurrent Q-Learning on Linked Multi-Component Robotic Systems&quot;<br /> : Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br /> : Lecture Notes in Computer Science, 2011, Volume 6679/2011, 463-470, DOI: 10.1007/978-3-642-21222-2_56<br /> : Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21218-5<br /> <br /> ==2010==<br /> <br /> ;Moujahid, A.; d'Anjou, A.; Torrealdea, F.J.; Torrealdea, F.<br /> :Energetic considerations on the dynamics of Hodgkin-Huxley neurons<br /> :2010 Sixth International Conference on Natural Computation (ICNC 2010)<br /> :On page(s): 3156 - 3163<br /> :Location: Yantai, Shandong<br /> :ISBN: 978-1-4244-5958-2<br /> :INSPEC Accession Number: 11554266 <br /> <br /> ; Ion Marques, Manuel Graña<br /> : Face processing for security: a short review<br /> : A. Herrero, E. Corchado, C. Redondo, A. Alonso (eds) Computational Intelligence in Security for Information Systems 2010, Adv. Int. and Soft Computing, vol. 85, Springer Verlag, 2010<br /> : pp. 89-96<br /> : ISBN 978-3-642-16625-9<br /> <br /> ; Jose Manuel Lopez-Guede, Ekaitz Zulueta, Borja Fernández and Manuel Graña<br /> : Multi-Robot Systems Control Implementation<br /> : Suraiya Jabin (Ed.), Robot Learning, pp.137-150. Sciyo 2010.<br /> : ISBN 978-953-307-104-6<br /> <br /> ; C. Hernandez, H. Viana, M.A. Veganzones, L. Nunes, M. Graña, D. Lopes<br /> : Biomass estimation: a case study in a forest area of northern Portugal<br /> : D. Lopes et al. (eds) Mixed and pure forest in a changing world, <br /> : Univ. of Tras-os-Montes e Alto DOuro, (2010) ISBN 978-972-669-980-4<br /> <br /> ;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br /> :A Comparison of VBM results by SPM, ICA and LICA.<br /> :Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br /> : ISBN 978-3-642-13802-7<br /> <br /> ;Ivan Villaverde, Borja Fernandez-Gauna and Ekaitz Zulueta<br /> :''Lattice Independent Component Analysis for mobile robot localization''<br /> :In E. Corchado et al. (Eds.), The 5th International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), Part II, LNAI vol. 6077, pp. 335-342. Springer, Heidelberg, 2010. (ISBN 978-3-642-13802-7). [http://dx.doi.org/10.1007/978-3-642-13803-4_42 DOI]<br /> <br /> ;I. Macía, M. Graña, and C. Paloc<br /> :Towards a Proposal for a Vessel Knowledge Representation Model<br /> :R. Setchi et al. (Eds.): KNOWLEDGE-BASED AND INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS KES 2010, Part IV, LNAI 6279, pp. 80--87. Springer Heidelberg (2010)<br /> : ISBN-13 978-3-642-15383-9 <br /> : [[media:Kes-2010-i-macia.pdf|slides]]<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> :Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br /> :in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br /> :2010 Bentham Science Publishers<br /> <br /> ; Miguel A. Veganzones, Carmen Hernández<br /> :[[Media:Hais2010-veganzones.pdf | &quot;On the use of a hybrid approach to contrast Endemember Induction Algorithms&quot;]]<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.69 - 76 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br /> <br /> ; Ramón Moreno, J.M. López-Guede, Alicia d'Anjou<br /> : Hybrid Color Space Transformation to Visualize Color Constancy.<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.241 - 247 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br /> <br /> ; José Manuel López-Guede, Ekaitz Zulueta, Borja Fernández-Gauna<br /> : Neuronal Implementation of Predictive Controllers<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.312 – 319 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_39<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta<br /> : Linked Multicomponent Robotic Systems: Basic Assessment of Linking Element Dynamical Effect <br /> : Hybrid Artificial Intelligent Systems, Part I, Manuel Grana Romay; Emilio S. Corchado Rodriguez; Maite Garcia-Sebastian (Eds.), (LNCS/LNAI) Vol. 6076, Springer Verlag, 2010, pp.73 – 79<br /> : ISBN 978-3-642-13768-6 : DOI: 10.1007/978-3-642-13769-3_9<br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou <br /> : A image color Gradient Preserving Color constancy<br /> : FUZZ-IEEE 2010, IEEE catalog Number: CFP10FUZ-DVD pp.710-714, Barcelona, Spain ([[media:Wcci2010ramon.pdf |Download slides]])<br /> : ISBN 978-1-4244-6920-8<br /> <br /> ;Manuel Graña, Carmen Hernández, Alicia D’Anjou, and Blanca Cases<br /> :Percolating Swarm Dynamics, [http://www.youtube.com/watch?v=PKN-n9XuU3k]<br /> :N. García-Pedrajas, F. Herrera, C. Fyfe, J.M. Benitez, M. Ali (eds.) Trends in Applied Intelligent Systems: Proc. IEA/AIE 2010, Part III, LNAI 6098, pp. 538–545<br /> :ISBN 978-3642130328<br /> <br /> ;Andoni Beristain Iraola, Manuel Graña Romay<br /> :Interactive Multimedia Tabletops (IMT) for Casual Users <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 681-688<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;R. Martínez, K. Lopez de Ipiña, E. Irigoyen, N. Asla, N. Garay, A. Ezeiza, I. Fajardo<br /> :Emotion Elicitation Oriented to the Development of a Human Emotion Management System for People with Intellectual Disabilities <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 689-696<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;N. Barroso, K. Lopez de Ipiña, A. Ezeiza<br /> :Acoustic Phonetic Decoding Oriented to MultilingualSpeech Recognition in the Basque Context <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 697-704<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;K. Lopez de Ipiña, M.C. Hernández, M. Graña, E. Martinez, C. Vaquero<br /> :A Computer-Aided Decision Support System for Shoulder Pain Pathology <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 705-712<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;A. Moujahid, A. D’Anjou, F.J. Torrealdea<br /> :Energy Cost Reduction in the Synchronization of a Pair of Nonidentical Coupled Hindmarsh-Rose Neurons <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 657-664<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;A. Conde, K. Lopez de Ipiña, M. Larrañaga, J.A. Elorriaga, J.M. Lopez, E. Irigoyen, N. Garay-Vitoria, A. Ezeiza, J. Rubio<br /> :An Intelligent Tutoring System Oriented to the Integration of People with Intellectual Disabilities<br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 639-647<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> : A color transformation for robust detection of color landmarks in robotic contexts<br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 665-672<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen, Ramon Moreno, Manuel Graña<br /> :Experiments on Robotic Multi-agent System for Hose Deployment and Transportation <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 573-580<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ; Manuel Graña, Blanca Cases, Carmen Hernandez, and Alicia D’Anjou<br /> :Further results on swarms solving Graph Coloring<br /> :D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part III, LNCS 6018, pp. 541--551. Springer, Heidelberg (2010)<br /> : ISBN 978-3-642-12178-4<br /> <br /> ; Andoni Beristain, Manuel Graña<br /> : An stable skeletonization for tabletop gesture recognition<br /> :D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part I, LNCS 6016, pp. 610--621. Springer, Heidelberg (2010)<br /> :ISBN 978-3-642-12155-5<br /> <br /> ==2009==<br /> <br /> ;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid<br /> :Computing the energy cost of the information transmitted by model biological neurons<br /> :AIP Conf. Proc., Volume 1148, Issue 1, August 13, 2009, Pages 250-253<br /> :ISBN: 978-0-7354-0685-8<br /> <br /> ;Iñigo Barandiaran and Charlotte Cottez and Céline Paloc and Manuel Graña<br /> :Comparative Evaluation of Random Forest and Fern Classifiers for Real-Time Feature Matching<br /> :Selected Readings in computer graphics, pp. 418-427<br /> : Fraunhofer Institute for Computer Graphics Research<br /> <br /> ;Jose Manuel Lopez-Guede, Manuel Graña, Ekaitz Zulueta, Oscar Barambones<br /> : Economical Implementation of Control Loops for Multi-Robot Systems <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4.<br /> :pp.1053-1059<br /> <br /> ;Zelmar Echegoyen, Alicia d’Anjou, Ivan Villaverde, Manuel Graña<br /> :Towards the adaptive control of a multirobot system for an elastic hose <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4. <br /> :pp. 1045-1052<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen and Manuel Graña<br /> :Neuro-Evolutive system for ego-motion estimation with a 3D camera. <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4.<br /> :pp 1021-1028<br /> <br /> ;Iván Macía Oliver, Jon Haitz Legarreta, Céline Paloc, Manuel Graña, Josu Maiora, Guillermo García<br /> :Segmentation of Abdominal Aortic Aneurysms in CT Images using a Radial Model Approach [[media:IMacia IDEAL2009 Segmentation of AAAs in CT Images.pdf|draft]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.664-671<br /> <br /> ;Josu Maiora, Guillermo García, Arantxa Tapia, Ivan Macía, Jon Haitz Legarreta, Manuel, Graña<br /> :Stent Graft Change Detection after Endovascular Abdominal Aortic Aneurysm Repair. [[media:IDEAL-2009-Maiora.pdf|draft]]<br /> :Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.656-663<br /> <br /> ;Iñigo Barandiaran, Iván Macía, Eva Berckmann, Diana Wald, Michael Pierre Dupillier, Celine Paloc, and Manuel Graña<br /> :An automatic segmentation and reconstruction of mandibular structures from CT-data [[media:IDEAL-2009-V3(No Software)Barandiaran.pdf|draft]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.649-655<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa, <br /> : Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection [[media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]] [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf | slides]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.641-648<br /> <br /> ; Blanca Cases, Abdelmalik Moujahid, Manuel Graña, Alicia d'Anjou<br /> :Chaotic patterns in crowd simulation<br /> : Proc ECAL 2009, pp ***<br /> : ISBN pending<br /> <br /> ;Manuel Graña, Maite Garcia-Sebastián, Carmen Hernandez<br /> : Lattice Independent Component Analysis for fMRI analysis [[media:Grana-icann-2009.pdf|draft]] [[media:ICANN-2009-Grana.pdf|slides]]<br /> : M. Polycarpou, C. Panayiotou, C. Alippi, G. Ellinas (Eds.), Artificial Neural Networks - ICANN 2009, LNCS 5768, Springer Verlag, pp.725-734<br /> : ISBN 978-3-642-04276-8<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d'Anjou,Carmen Hernandez<br /> : Bayesian Reflectance Component Separation. [[media:KES2009-DRM.pdf|draft]]<br /> : Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte II, LNCS 5712, Springer Verlag, pp.846-852<br /> : ISBN 978-3-642-04591-2<br /> <br /> ;Carlos Toro, Manuel Graña, Jorge Posada, Javier Vaquero, Cesar Sanin, Edward Szczerbicki<br /> : Domain modeling based on Engineering Standards. [[media:KES2009 ctoroV9.pdf|draft]]<br /> : Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte I, LNCS 5711, Springer Verlag, pp.95-102<br /> : ISBN 978-3-642-04594-3<br /> <br /> ;Ivan Villaverde, Manuel Graña<br /> :An Improved Evolutionary Approach for Egomotion Estimation with a 3D TOF Camera<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 390-398<br /> : ISBN 978-3-642-02266-1<br /> <br /> ; Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br /> : On the control of a multi-robot system for the manipulation of an elastic hose<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 382-389<br /> : ISBN 978-3-642-02266-1<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : Results of an Adaboost approach on Alzheimer's Disease detection on MRI [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf|slides]]<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 114-123<br /> : ISBN 978-3-642-02266-1<br /> <br /> ; Carlos Toro, Manuel Graña, Jorge Posada<br /> :An architecture for the Semantic Enhancement of Virtual Engineering Applications<br /> :Intelligent Systems for Knowledge Management, <br /> : Ngoc Thanh Nguyen and Edward Szczerbicki (Editors), pp.175-196, Springer Verlag 2009<br /> : ISBN 978-3-642-04169-3<br /> <br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> :On the Use of Morphometry Based Features for Alzheimer's Disease Detection on MRI. [http://www.springerlink.com/content/p101v5833k55512g/?p=d18ee031594e45ff9562cd2b97980b2c&amp;pi=119]<br /> :Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I)<br /> : Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964<br /> : ISBN 978-3-642-02477-1<br /> <br /> ;Manuel Graña, Iván Villaverde, Jose Manuel López Guede, Borja Fernández<br /> :Review of Hybridizations of Kalman Filters with Fuzzy and Neural Computing for Mobile Robot Navigation [[media:HAIS-2009-grana-kalman-draft.pdf|draft]] [[media:HAIS-2009-kalman-presentacion.pdf|slides]]<br /> : 4th International Conference on Hybrid Artificial Intelligent Systems (HAIS09)<br /> : E. Corchado, X. Wu, E. Oja, A. Herrero, B. Baruque (eds), Springer Verlad 2009, LNAI 5572, pp. 121-128<br /> : ISBN 978-3-642-02318-7<br /> <br /> ==2008==<br /> <br /> ;E. Irigoyen, K. L. de Ipiña, N. Garay, I. Fajardo, A. Goicoechea, A. Ezeiza, M. Peñagarikano, G. Bordel, A. Conde, M. Larrañaga, A. Arruti, L.J. Rodríguez, J.M. López, E. Zulueta, M. Graña, J. Rubio <br /> :A ROBUST INTELLIGENT SYSTEM FOR INTERACTING WITH PEOPLE WITH COGNITIVE DISABILITIES <br /> : INTED2008 Proceedings<br /> :L. Gómez Chova, D. Martí Belenguer, I. Candel Torres (eds)<br /> :International Association of Technology, Education and Development , IATED, Valencia <br /> :ISBN: 978-84-612-0190-7 <br /> <br /> ;B. Cases, C. Hernandez, M. Graña, A. d'Anjou.<br /> :On the ability of Swarms to compute the 3-coloring of graphs.<br /> :In S. Bullock, J. Noble, R. Watson, M.A. Bedau (Eds.), Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 102-109, MIT Press, 2008<br /> : ISBN 978-0-262-75017-2, <br /> <br /> ;Ivan Villaverde and Manuel Graña, <br /> : A Hybrid Intelligent System for Robot Ego Motion Estimation with a 3D Camera<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds), LNAI 5271, Springer Verlag pp: 657-664<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; Ramón Moreno, Alicia d’Anjou and Manuel Graña, <br /> :Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 665-672<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; José Manuel López-Guede, Manuel Graña and Ekaitz Zulueta, <br /> : On Distributed Cooperative Control for the Manipulation of a Hose by a Multirobot System<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 673-679<br /> : ISBN 978-3-540-87655-7<br /> <br /> ;R.J. Duro, M. Graña and J. de Lope, <br /> :On the need of Hybrid Intelligent Systems in Modular and Multi Robotics<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 641-648<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; Manuel Graña, Maite García-Sebastián, Ivan Villaverde, Elsa Fernandez<br /> : An approach from Lattice Computing to fMRI analysis [[Media:Proceedings-cla2008-workshop.pdf|pdf]]<br /> : LBM 2008 (CLA 2008), Proceedings of the Lattice-Based Modeling Workshop, Vassilis Kaburlasos, Uta Priss, Manuel Graña (eds), pp:33-44<br /> : ISBN 978–80–244–2112–4<br /> <br /> ; Miguel Angel Veganzones, Manuel Graña<br /> : Endmember extraction methods: a short review<br /> : I. Lovrek, R.J. Howlett, L.C. Jain (Eds.): KES 2008, Part III, LNAI 5179, pp:400-407; Springer-Verlag Berlin Heidelberg. 2008.<br /> : ISBN 978-3-540-85566-8<br /> <br /> ;M. Graña. <br /> :A Brief Review of Lattice Computing [[media:WWCI-2008-lattice-computing-review-draft.pdf|draft]]<br /> :Proceedings FUZZ-IEEE 2008, pp.1777-1781<br /> :ISBN 978-1-4244-1819-0<br /> <br /> ;Maite García-Sebastián, A. M. Savio, M. Graña. <br /> :Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm <br /> : Proceedings CEC 2008, pp.4146-4150<br /> :ISBN 978-1-4244-1822-0<br /> <br /> ;Diego Sal, Manuel Graña<br /> :''A Multiobjective Evolutionary Algorithm for Hyperspectral Image Watermarking''<br /> : Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.49-60<br /> : ISBN 978-3-540-79352-6<br /> <br /> ; Miguel Angel Veganzones, José Orlando Maldonado, Manuel Graña<br /> :''On Content-Based Image Retrieval Systems For Hyperspectral Remote Sensing Images''<br /> : Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.97-111<br /> : ISBN 978-3-540-79352-6<br /> <br /> ==2007==<br /> <br /> ; M. Graña<br /> :''State of the art in lattice computing for artificial intelligence applications''<br /> : Mathematical and Computational Models, R. Nadarajan R. Anitha, C. Porkodi (eds), pp. 233--242<br /> : New Delhi, India:Narosa Publishing House <br /> :ISBN 978-81-7319-882-3<br /> <br /> ;I. Villaverde, M. Graña, A. d'Anjou<br /> :''Morphological Independence for Landmark Detection in Vision Based SLAM''<br /> :Computational and ambient intelligence, F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds), LNCS 4507, Springer Verlag, Heidelberg, pp. 837-844<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br /> :ISBN 3-540-73006-0<br /> :ISSN 0302-9743<br /> <br /> ;Maite García-Sebastián, Ana I. Gonzalez, Manuel Graña<br /> :''Derivation of SOM-like rules for intensity inhomogeneity correction in MRI''<br /> :Computational and ambient intelligence (IWANN), F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds) LNCS 4507, Springer Verlag, Heidelberg, pp. 669-676, 2007.<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br /> :ISBN 3-540-73006-0<br /> :ISSN 0302-9743<br /> <br /> ;Manuel Graña, Ivan Villaverde, Ramon Moreno, Francisco X. Albizuri<br /> :''Convex coordinates from lattice independent sets for visual pattern recognition''<br /> :Computational Intelligence Based on Lattice Theory, G. Ritter, V. Kaburlasos (eds), Springer Verlag, pp: 99-126<br /> :ISBN 978-3-540-72686-9<br /> <br /> ;Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br /> :''Modeling a Legged Robot for Visual Servoing'' [[media:Presentacion-ICCSA-2007-zelmar.pdf|slides]] [[media:Iccsa-2007-aibo-zelmar.pdf|draft]]<br /> :Computational Science and Its Applications -- ICCSA 2007, Osvaldo Gervasi and Marina L. Gavrilova (eds) LNCS 4707, Springer Verlag, pp: 798-810<br /> :ISBN 978-3-540-74482-5<br /> <br /> ;Maite García-Sebastián, Manuel Graña<br /> :''SOM for intensity inhomogeneity correction in MRI''<br /> :ESANN 2007, M. Verleysen (ed), D-side Publications, pp: 109-114<br /> :ISBN 2-930307-07-2<br /> <br /> ;Ramon Moreno, Manuel Grana Romay, Miguel Angel Veganzones<br /> :''A Remote Mycological Assistant''<br /> :IDAACS'2007, Anatoly Sachenko, Peter J. A. Reusch, Richard Duro, Wieslaw Winiecki (eds), IEEE Press, pp. 408-412<br /> :ISBN 1-4244-1348-6<br /> <br /> ;I. Villaverde, M. Graña, J.L. Jimenez<br /> :''Lattice Independence and Vision Based Mobile Robot Navigation''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1196-1203<br /> :ISBN 978-3-540-74826-7<br /> <br /> ;Zelmar Echegoyen, Alicia d’Anjou, Manuel Graña <br /> :''Contribution to legged robot visual servoing''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1179-1186<br /> :ISBN 978-3-540-74826-7<br /> <br /> ;I. Cearreta, J.M. López, K. López de Ipiña, M. Hernandez, N. Garay, M. Graña, A. Álvarez<br /> :''Affective Computing as a component of Ambient Intelligence''<br /> :INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1580-1586<br /> :ISBN 978-981-270-967-7<br /> <br /> ;M. Graña, J.L. Jimenez, C. Hernandez<br /> :''Lattice Independence, Autoassociative Morphological Memories and unsupervised segmentation of Hyperspectral Images''<br /> :INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1624-1631<br /> :ISBN 978-981-270-967-7<br /> <br /> ;Jose Orlando Maldonado, David Vicente Herrera, Manuel Graña Romay<br /> :''Visual texture characterization of recycled paper quality''<br /> :Innovations in Hybrid Intellligent Systems, Advances in Soft Computing Vol. 44, Springer Verlag, pp: 288-295<br /> :ISBN 978-3-540-74971-4<br /> <br /> ; Israel Rebollo, Manuel Graña<br /> : Gestión Multiagente de Almacenes Usando RFID<br /> : 1 jornadas científicas sobre RFID, A. García, J. Bravo, R. Hervás, J.C. Encinas, Gabriel Chavira, Salvador W. Nava, J. M. Pastor, P. García, J. G.Escribano (EDS), pp. 7--12<br /> :ISBN 978-84-612-0542-4<br /> <br /> ==2006==<br /> <br /> ;Ana I. González, Alicia D’Anjou, Maite García-Sebastián, Manuel Graña <br /> :''SOM and Neural Gas as Graduated Nonconvexity Algorithms''<br /> :The 2006 International Conference on Computational Science and its Applications -- ICCSA 2006, M. Gavrilova et al.(Eds.) LNCS 3982, Springer Verlag, Berlin Heidelberg, ICCSA 2006, part III, pp. 1143-1152. JCR(2005) 0.402.<br /> :ISBN 3-540-34075-0<br /> <br /> ;C.Hernández, J. Gallego, Maite García-Sebastián, Manuel Graña Romay<br /> :''On Clustering Performance Indices for Multispectral Image''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, 10 International Conf. -- KES 2006, B. Gabrys, R. J. Howlett and L. C. Jain (Eds.) LNCS 4253, Springer Verlag, Berlin, KES 2006, Part III, pp. 277-283. JCR(2005) 0.402.<br /> :ISBN 978-3-540-46542-3<br /> <br /> ;José Orlando Maldonado, David Vicente, Miguel Angel Veganzones, Manuel Graña<br /> :[[Media:Jic07-maldonado.pdf | &quot;Spectral indexing for Hyperspectral image CBIR&quot;]]<br /> :ESA-EUSC 2006 Image Information Mining for Security and Intelligence Proceedings (WPP-274).<br /> <br /> ==2005==<br /> <br /> ;Maite García-Sebastián, E.Fernandez, M. Graña, F.J. Torrealdea <br /> :''A gradient descent MRI illumination correction algorithm''<br /> :Computational Intelligence an Bioinspired Systems -- IWANN 2005, F. Sandoval, A. Prieto, J. Cabestany (eds) LNCS 3512, Springer Verlag, Berlin, vol. 3512, pp. 913-920. JCR(2005) 0.402.<br /> :ISBN 3-540-26208-3</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Cap%C3%AD%C2%ADtulos_de_Libro&diff=16757 2014-06-03T21:53:43Z

<p>Alexsavio: /* 2014 */</p> <hr /> <div>== enviados ==<br /> <br /> ==2014==<br /> <br /> ;Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br /> International Conference on Hybrid Artificial Intelligence Systems HAIS 14, Salamanca, Spain.<br /> <br /> ==2013==<br /> <br /> <br /> <br /> ;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, Manuel Graña<br /> :Empirical Study of the Sensitivity of CACLA to Sub-optimal Parameter Setting in Learning Feedback Controllers<br /> :International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 101-108, Springer<br /> : DOI 10.1007/978-3-319-01854-6_11<br /> <br /> ;Jose Manuel López-Guede, Jose Antonio Ramos-Hernanz, Manuel Graña <br /> : Artificial Neural Network Modeling of a Photovoltaic Module<br /> : International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 389-397<br /> : DOI 10.1007/978-3-319-01854-6_40<br /> : ISBN 978-3-319-01853-9<br /> <br /> <br /> ;Grana, M. ; Rebollo, I. <br /> : Instances of subconscious social intelligent computing<br /> : Computational Aspects of Social Networks (CASoN), 2013 Fifth International Conference on, 2013 , Page(s): 74 - 78<br /> : Digital Object Identifier: 10.1109/CASoN.2013.6622604 <br /> <br /> ;Grana, M. ; Rebollo, I. <br /> :Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem<br /> :Nature and Biologically Inspired Computing (NaBIC), 2013 World Congress on <br /> :Digital Object Identifier: 10.1109/NaBIC.2013.6617846 <br /> :Publication Year: 2013 , Page(s): 107 - 112<br /> <br /> <br /> ;M. Graña<br /> :Subconscious Social Computational Intelligence<br /> :Computational Intelligence, Cyber Security and Computational Models, Proceedings of ICC3, 2013 G. Sai Sundara Krishnan, R. Anitha, R. S. Lekshmi, M. Senthil Kumar, Anthony Bonato and Manuel Graña (eds) Advances in Intelligent Systems and Computing 246, Springer India 2014, Pages 15-21<br /> : ISBN: 978-81-322-1679-7 (Print) 978-81-322-1680-3 (Online)<br /> <br /> ; Darya Chyzhyk, Manuel Graña<br /> : Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br /> : Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br /> : Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br /> : DOI 10.1007/978-3-642-42017-7_10<br /> : Print ISBN 978-3-642-42016-0<br /> : Online ISBN 978-3-642-42017-7<br /> : Series ISSN 1865-0929<br /> <br /> ;Manuel Graña, Ion Marqués, Alexandre Savio, Bruno Apolloni,<br /> :A domestic application of Intelligent Social Computing: the SandS project <br /> : International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, A Herero et al. (eds) pp 221-228<br /> : Springer Verlag, Advances in Intelligent Systems and Computing, 239<br /> : ISBN 978-3-319-01853-9<br /> : DOI 10.1007/978-3-319-01854-6_23<br /> <br /> ; Manuel Graña, J. David Nuñez-Gonzalez, Bruno Apolloni<br /> : A discussion on trust requirements for a social network of eahoukers [http://link.springer.com/chapter/10.1007/978-3-642-40846-5_54]<br /> : J.-S. Pan et al. (Eds.): Hybrid Artificial Intelligent Systems HAIS 2013 Proceedings, LNAI 8073, pp. 540--547. Springer, Heidelberg (2013)<br /> :ISBN: 978-3-642-40845-8 (Print) 978-3-642-40846-5 (Online)<br /> <br /> ; Darya Chyzhyk and Manuel Graña<br /> : Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features<br /> : J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br /> : ISSN: 0302-9743 DOI 10.1007/978-3-642-40846-5_48<br /> <br /> ; M. Termenon, M. Graña, A. Besga, J. Echeveste, J. M. Pérez and A. M. Gonzalez-Pinto<br /> : Diagnosis of Bipolar Disorder based on Principal Component Analysis and Support Vector Machines over the MRI deformation Jacobian<br /> : Proceedings of the 8th International Conference on Computer Recognition Systems CORES 2013<br /> : Advances in Intelligent Systems and Computing Volume 226, 2013, pp 569-578<br /> : Print ISBN: 978-3-319-00968-1, Online ISBN: 978-3-319-00969-8<br /> : ISSN 2194-5357<br /> <br /> ;M. Graña, B. Apolloni, M. Fiasché, G. Galliani, C. Zizzo, G. Caridakis, G. Siolas, S. Kollias, F. Barriento, S. San Jose<br /> : Social and Smart: towards an instance of subconscious social intelligence [http://link.springer.com/chapter/10.1007/978-3-642-41016-1_32]<br /> : Proceedings IPMSC 2013 [http://delab.csd.auth.gr/eann2013/workshops.php?workshop_id=3]<br /> : L. Iliadis, H. Papadopoulos, and C. Jayne (Eds.): EANN 2013, Part II, CCIS 384, pp. 302–311, 2013<br /> : Springer<br /> : ISBN: 978-3-642-41015-4 (Print) 978-3-642-41016-1 (Online)<br /> <br /> ;Israel Rebollo, Manuel Graña<br /> : User assistance tool for a WebService ERP [http://link.springer.com/chapter/10.1007/978-3-319-00563-8_24]<br /> : Trends in Practical Applications of Agents and Multiagent Systems, Javier Bajo Perez et al. (eds.), Advances in Intelligent Systems and Computing Volume 221, 2013, pp 193-200<br /> : Springer <br /> : SBN: 978-3-319-00562-1 (Print) 978-3-319-00563-8 (Online)<br /> <br /> ;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, and Manuel Graña<br /> :An Empirical Study of Actor-Critic Methods for Feedback Controllers of Ball-Screw Drivers<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 441--450. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; Ion Marques and Manuel Graña<br /> :Greedy Sparsification WM Algorithm for Endmember Induction in Hyperspectral Images<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 336--344. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; Jose Manuel Lopez-Guede, Manuel Graña, Jose Antonio Ramos-Hernanz, and Fernando Oterino<br /> :A Neural Network Approximation of L-MCRS Dynamics for Reinforcement Learning Experiments<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 317--325. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br /> : Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br /> : ISSN 0302-9743<br /> <br /> ; Darya Chyzhyk and Manuel Graña<br /> : Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br /> : ISSN 0302-9743<br /> <br /> ;Borja Ayerdi, Alexandre Savio, and Manuel Graña<br /> :Meta-ensembles of Classifiers for Alzheimer's Disease Detection Using Independent ROI Features<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122--130. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; B. Apolloni, M. Fiasche, G. Galliani, C. Zizzo, G. Caridakis, G. Siola, S. Kollia, M. Grana Romay, F. Barriento, S. San Jose<br /> :Social Things - The SandS instantiation<br /> : IoT-SoS 2013<br /> : ISBN<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107--114. Springer, Heidelberg (2013)<br /> : Eds.: I. Rojas, G. Joya, and J. Cabestany<br /> : [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> <br /> ; Ramon Moreno, Manuel Graña and Kurosh Madani<br /> : ''A robust color Watershed transformation and image segmentation defined on RGB Spherical Coordinates''<br /> : Robotic Vision: Technologies for Machine Learning and Vision Applications, pp112-128 <br /> : doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br /> <br /> ; J.M. Lopez-Guede, B. Fernandez-Gauna, R. Moreno and M. Graña,<br /> : ''Visual Detection in Linked Multi-Component Robotic Systems''<br /> : Robotic Vision: Technologies for Machine Learning and Vision Applications. pp78-97<br /> : doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br /> <br /> ==2012==<br /> ; Manuel Graña, Darya Chyzhyk<br /> : Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br /> : HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br /> : Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br /> : DOI: 10.1109/HIS.2012.6421391 <br /> : Print ISBN: 978-1-4673-5114-0<br /> <br /> ;Miguel A. Veganzones, Mihai Datcu, Manuel Graña.<br /> : &quot;Relevance feedback by dissimilarity spaces for hyperspectral CBIR.&quot; <br /> : [http://bookshop.europa.eu/is-bin/INTERSHOP.enfinity/WFS/EU-Bookshop-Site/en_GB/-/EUR/ViewPublication-Start?PublicationKey=LBNA25514 Proceedings of the ESA-EUSC-JRC 8th conference on image information mining, Knowledge discovery from earth observation data]. Edited by P. Soille, M. Iapaolo, P.G. Marchetti, and M. Datcu. European Comission. Pages: 1-5. 2012.<br /> : ISBN: 978-92-79-26419-1 ISSN: 1831-9424 DOI: 10.2788/49465<br /> <br /> ;V. Amarger, D. M. Ramík, C. Sabourin, K. Madani, R. Moreno, L. Rossi, M. Graña, <br /> :&quot;Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation: Application to Wildland Fires’ Outlines Extraction&quot;, <br /> :Proceedings of International conference on Image Processing Theory, Tools and Applications (IEEE-IPTA 2012), Istanbul, Turkey, October 15 - 18, pp. 19-24, 2012. [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/275/IPTA-2012-Paper-299-Final-PDF.pdf]<br /> :ISBN: 978-1-4673-2582-0<br /> <br /> ; Israel Rebollo and Manuel Graña<br /> : Dynamic Tabu Search for Non Stationary Social Network identification based on Graph Coloring<br /> : [http://www.springer.com/engineering/computational+intelligence+and+complexity/book/978-3-642-32921-0 Advances in Intelligent Systems and Computing][[media: israel_SOCO2012.pdf|Slides]]<br /> : Soft Computing Models in Industrial and Enviromental Applications, Vol. 188, pages 495 - 503, 2012.<br /> : Eds: Václav Snásel, Ajith Abraham and Emilio S. Corchado.<br /> : ISBN: 978-3-642-32921-0<br /> <br /> ; Alexandre Savio<br /> : Supervised classification using deformation-based features for Alzheimer’s disease detection on the OASIS cross-sectional database <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Eduardo Carrasco, Frank Guijarro<br /> : A Semantic Clinical Decision Support System: conceptual architecture and implementation guidelines<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1390 - 1399, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; G. García, J. Maiora, A. Tapia, M. De Blas<br /> : Computer-aided Diagnosis of Abdominal Aortic Aneurysm after Endovascular Repair Using Texture Analysis<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 716-725, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Darya Chyzhyk<br /> : Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Iñigo Barandiaran, John Congote, Jon Goenetxea, Oscar Ruiz<br /> : Evaluation of interest point detectors for image information extraction<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2170 - 2179, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Ramón Moreno, Alicia d'Anjou<br /> : Hyperspectral Image Segmentation by t-Watershed and Hyperspherical Coordinates<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2114 - 2121, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ekaitz Zulueta<br /> : Towards a real time simulation of Linked Multi-Component Robotic Systems<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2019 - 2027, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Iñigo Barandiaran, Grégory Maclair, Izaro Goienetxea, Carlos Jauquicoa, Manuel Graña<br /> : A Comparative Study of Classifier Ensembles for Karyotyping<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1400 - 1407, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; M. Termenon, E. Fernández, A. Barrós-Loscertales, J.C. Bustamante, C. Ávila<br /> : Impact of Analysis Circularity: a Case Study in Cocaine Addiction detection on MRI<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2201 - 2209, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbicki, Manuel Graña, Jorge Posada<br /> : Speed-up of a Knowledge-Based Clinical Diagnosis System using Reflexive Ontologies <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1480 - 1489, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Manuel Graña, Adrian Agreda<br /> : Trust in communication and multiagent systems <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 816 - 822, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Miguel A. Veganzones<br /> : On hyperspectral morphology by lattice auto-associative memories supervised orderings<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2122-2129, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. <br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ramon Moreno, Manuel Graña<br /> : &quot;Visual Detection in Linked Multi-Component Robotic Systems&quot;<br /> : Published in: &quot;Robotic Vision: Technologies for Machine Learning and Vision Applications&quot;<br /> : Eds: Miguel Cazorla and Jose Garcia. IGI Global. <br /> : ISBN:<br /> <br /> ; M. Termenon, M. Graña, A. Barrós-Loscertales, J. C. Bustamante, C. Ávila.<br /> : &quot;Cocaine Dependent Classification using Brain Magnetic Resonance Imaging&quot; [http://www.springerlink.com/content/k54353335gx22208/]<br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAISTermenon2012_Presentacion.pdf|Slides]]<br /> : HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 448-454, 2012. LNCS 7209 <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Ion Marqués and Manuel Graña<br /> : &quot;Image Security and Biometrics: A Review&quot; [http://dx.doi.org/10.1007/978-3-642-28931-6_42 Doi] [[media:Hais survey 03-11-2011.pdf|draft]]<br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012.[[media: imarques-HAIS2012.pdf|Slides]]<br /> : HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 436-447, 2012. LNCS 7209 <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Miguel A. Veganzones and Manuel Graña<br /> : &quot;Hybrid computational methods for hyperspectral image analysis.&quot;<br /> : [http://www.springer.com/computer/ai/book/978-3-642-28930-9 HAIS 2012, Part II, LNCS 7209], pp. 424-435. 2012.<br /> <br /> ; Israel Rebollo, Manuel Graña<br /> : &quot;An empirical comparison of some approximate methods for Graph Coloring&quot; [[media: hais_israel.pdf|draft]] <br /> : Hybrid Artificial Intelligent Systems (HAIS 2012), Salamanca, Spain. March 28-30, 2012. <br /> : Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part I, pp. 600-609, 2012. LNCS 7208 <br /> : DOI: 10.1007/978-3-642-28942-2_54<br /> <br /> ; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br /> : A Novel Lattice Associative Memory Based on Dendritic Computing&quot; [[media: HAIS12-SS11-2169.pdf|draft]] <br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br /> : Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br /> : Series: Lecture Notes in Computer Science, Vol. 7209<br /> : Subseries: Lecture Notes in Artificial Intelligence<br /> : Eds.: Corchado Rodriguez, E.S.; Snasel, V.; Abraham, A.; Wozniak, M.; Grana, M.; Cho, S.-B. <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Miguel A. Veganzones, Mihai Datcu, Manuel Graña<br /> : [[Media:ICPRAM_2012_-_veganzones.pdf | Dictionary based hyperspectral image retrieval]] <br /> : Proceedings of the [http://icpram.org 1st International Conference on Pattern Recognition Applications and Methods], pages 426-432. 2012.<br /> : DOI: 10.5220/0003861904260432<br /> : Copyright SciTePress<br /> <br /> ==2011==<br /> <br /> ; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br /> : Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br /> : 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br /> : Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br /> : Eds: José Manuel Ferrández, F. Javier Toledo, José Ramón Álvarez Sánchez, Félix de la Paz<br /> : Springer-Verlag Berlin, Heidelberg<br /> : ISBN: 978-3-642-21325-0<br /> <br /> ; Israel Rebollo and Manuel Graña.<br /> : &quot;Further results of Gravitational Swarm Intelligence for Graph Coloring&quot; [[media: nabic_israel.pdf|draft]]<br /> : Nature and Biologically Inspired Computing (NaBIC), 2011, Salamanca, Spain. 19-21 Oct. 2011<br /> : DOI: Digital Object Identifier: 10.1109/NaBIC.2011.6089456<br /> : Pages: 183-188<br /> : ISBN 978-1-4577-1122-0<br /> <br /> ; Israel Rebollo and Manuel Graña.<br /> : &quot;Gravitational Swarm Approach for Graph Coloring&quot;[[media: nicso_israel.pdf|draft]]<br /> : Proceedings of the [http://www.nicso2011.org/ NICSO 2011], Cluj-Napoca, Romania. Oct 20-22, 2011.<br /> : Studies in Computational Intelligence, 2011, Volume 387, 159-168, DOI: 10.1007/978-3-642-24094-2 <br /> : D.A. Pelta, N. Krasnogor, D. Dumitrescu, Camelia Chira and R. Lung (eds)<br /> : Publisher: Springer-Verlag Berlin / Heidelberg<br /> : ISBN 978-3-642-24093-5<br /> <br /> ; Maite Termenon, Ariadna Besga, Jon Echeveste, Ana Gonzalez-Pinto and Manuel Graña.<br /> : &quot;Alzheimer Disease Classification on Diffusion Weighted Imaging features&quot;<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6687/2011, 120-127, DOI: 10.1007/978-3-642-21326-7_14 <br /> : José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br /> : ISBN 978-3-642-21325-0<br /> <br /> ; Ion Marqués, Manuel Graña.<br /> : [[Media:iwinac2011_ion.pdf | &quot;Experiments on Lattice Independent Component Analysis for Face Recognition.&quot;]]<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6678, pp.286-294, DOI: [http://dx.doi.org/10.1007/978-3-642-21326-7_31 10.1007/978-3-642-21326-7].<br /> : J. Ferrández, J. Álvarez Sánchez, F. de la Paz and F. Toledo (eds)<br /> : ISBN 978-3-642-21325-0<br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : Deformation based features for Alzheimer's disease detection with linear SVM.; <br /> : Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> <br /> ; Miguel A. Veganzones, Manuel Graña.<br /> : [[Media:Whispers2011_veganzones.pdf | &quot;On the validation of a spectral/spatial CBIR system for hyperspectral images.&quot;]]<br /> : Proceedings of the [http://www.ieee-whispers.com/ 3rd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (IEEE-WHISPERS 2011)]. 2011.<br /> <br /> ; Avid Román-González, Miguel A. Veganzones, Manuel Graña, Mihai Datcu. <br /> : [[Media:esa2011_roman-gonzalez_veganzones.pdf | &quot;A novel data compression technique for remote sensing data mining.&quot;]]<br /> : Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br /> : P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 101-104<br /> : ISBN 978-92-79-19708-6<br /> <br /> ; Miguel A. Veganzones, Manuel Graña<br /> : [[Media:esa2011_veganzones_grana.pdf | &quot;Validation of remote sensing content-based information retrieval (RS-CBIR) systems upon scarce data.&quot;]]<br /> : Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br /> : P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 93-96<br /> : ISBN 978-92-79-19708-6<br /> <br /> ; Miguel A. Veganzones, Manuel Graña<br /> : [[Media:SOCO2011-veganzones-camera_ready.pdf | &quot;Validation of a Hyperspectral Content-Based Information Retrieval (RS-CBIR) System upon scarce data&quot;]]<br /> : Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br /> <br /> ; Darya Chyzhyk, Manuel Graña<br /> : Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br /> : Conference on Soft Computing Models in Industrial and Environmental Applications ([http://soco.usal.es/ SOCO 2011]), Salamanca, Spain. 6-8th April, 2011.<br /> : Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57<br /> : Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-19643-0<br /> <br /> ; Maite Termenon, Manuel Graña<br /> : Further results on Alzheimer Disease Detection on structural MRI features<br /> : Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br /> : Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 515-522, DOI: 10.1007/978-3-642-19644-7_54 <br /> : Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-19643-0<br /> <br /> ;Véronique Amarger, Dominik M. Ramík, Ramon Moreno, Lucile Rossi, Kurosh Madani, Manuel Graña<br /> :&quot;Wildland Fires’ Outlines Extraction a Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation Approach&quot; . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br /> <br /> ;Ramón Moreno, Manuel Graña, Dominik M. Ramík, Kurosh Madani<br /> :&quot;Image Segmentation by Spherical Coordinates&quot; . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> :&quot;A Hybrid Color Distance for Image Segmentation&quot;.Part II, Hybrid Artificial Intelligence Systems LNAI 6679, pp. 447–454, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] ISBN:978-3-642-21218-5<br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br /> : &quot;Empirical Study of Q-Learning Based Elemental Hose Transport Control&quot;.<br /> : Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br /> : Lecture Notes in Computer Science, 2011, Volume 6679/2011, 455-462, DOI: 10.1007/978-3-642-21222-2<br /> : Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21218-5<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> :&quot;A geometrical method of diffuse and specular image components separation&quot;. Advances in Computational Intelligence,Lecture Notes in Computer Science, 2011, Volume 6692/2011, 83-89, Eds:J.Cabestani, I.Rojas and G.Goya. DOI: 10.1007/978-3-642-21498-1_11 ISBN:978-3-642-21497-4<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> : &quot;Concurrent Modular Q-Learning with Local Rewards on Linked Multi-Component Robotic Systems&quot;<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6686/2011, 148-155, DOI: 10.1007/978-3-642-21344-1_16 <br /> : Editors: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21343-4<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> : &quot;Towards concurrent Q-Learning on Linked Multi-Component Robotic Systems&quot;<br /> : Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br /> : Lecture Notes in Computer Science, 2011, Volume 6679/2011, 463-470, DOI: 10.1007/978-3-642-21222-2_56<br /> : Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21218-5<br /> <br /> ==2010==<br /> <br /> ;Moujahid, A.; d'Anjou, A.; Torrealdea, F.J.; Torrealdea, F.<br /> :Energetic considerations on the dynamics of Hodgkin-Huxley neurons<br /> :2010 Sixth International Conference on Natural Computation (ICNC 2010)<br /> :On page(s): 3156 - 3163<br /> :Location: Yantai, Shandong<br /> :ISBN: 978-1-4244-5958-2<br /> :INSPEC Accession Number: 11554266 <br /> <br /> ; Ion Marques, Manuel Graña<br /> : Face processing for security: a short review<br /> : A. Herrero, E. Corchado, C. Redondo, A. Alonso (eds) Computational Intelligence in Security for Information Systems 2010, Adv. Int. and Soft Computing, vol. 85, Springer Verlag, 2010<br /> : pp. 89-96<br /> : ISBN 978-3-642-16625-9<br /> <br /> ; Jose Manuel Lopez-Guede, Ekaitz Zulueta, Borja Fernández and Manuel Graña<br /> : Multi-Robot Systems Control Implementation<br /> : Suraiya Jabin (Ed.), Robot Learning, pp.137-150. Sciyo 2010.<br /> : ISBN 978-953-307-104-6<br /> <br /> ; C. Hernandez, H. Viana, M.A. Veganzones, L. Nunes, M. Graña, D. Lopes<br /> : Biomass estimation: a case study in a forest area of northern Portugal<br /> : D. Lopes et al. (eds) Mixed and pure forest in a changing world, <br /> : Univ. of Tras-os-Montes e Alto DOuro, (2010) ISBN 978-972-669-980-4<br /> <br /> ;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br /> :A Comparison of VBM results by SPM, ICA and LICA.<br /> :Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br /> : ISBN 978-3-642-13802-7<br /> <br /> ;Ivan Villaverde, Borja Fernandez-Gauna and Ekaitz Zulueta<br /> :''Lattice Independent Component Analysis for mobile robot localization''<br /> :In E. Corchado et al. (Eds.), The 5th International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), Part II, LNAI vol. 6077, pp. 335-342. Springer, Heidelberg, 2010. (ISBN 978-3-642-13802-7). [http://dx.doi.org/10.1007/978-3-642-13803-4_42 DOI]<br /> <br /> ;I. Macía, M. Graña, and C. Paloc<br /> :Towards a Proposal for a Vessel Knowledge Representation Model<br /> :R. Setchi et al. (Eds.): KNOWLEDGE-BASED AND INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS KES 2010, Part IV, LNAI 6279, pp. 80--87. Springer Heidelberg (2010)<br /> : ISBN-13 978-3-642-15383-9 <br /> : [[media:Kes-2010-i-macia.pdf|slides]]<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> :Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br /> :in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br /> :2010 Bentham Science Publishers<br /> <br /> ; Miguel A. Veganzones, Carmen Hernández<br /> :[[Media:Hais2010-veganzones.pdf | &quot;On the use of a hybrid approach to contrast Endemember Induction Algorithms&quot;]]<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.69 - 76 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br /> <br /> ; Ramón Moreno, J.M. López-Guede, Alicia d'Anjou<br /> : Hybrid Color Space Transformation to Visualize Color Constancy.<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.241 - 247 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br /> <br /> ; José Manuel López-Guede, Ekaitz Zulueta, Borja Fernández-Gauna<br /> : Neuronal Implementation of Predictive Controllers<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.312 – 319 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_39<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta<br /> : Linked Multicomponent Robotic Systems: Basic Assessment of Linking Element Dynamical Effect <br /> : Hybrid Artificial Intelligent Systems, Part I, Manuel Grana Romay; Emilio S. Corchado Rodriguez; Maite Garcia-Sebastian (Eds.), (LNCS/LNAI) Vol. 6076, Springer Verlag, 2010, pp.73 – 79<br /> : ISBN 978-3-642-13768-6 : DOI: 10.1007/978-3-642-13769-3_9<br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou <br /> : A image color Gradient Preserving Color constancy<br /> : FUZZ-IEEE 2010, IEEE catalog Number: CFP10FUZ-DVD pp.710-714, Barcelona, Spain ([[media:Wcci2010ramon.pdf |Download slides]])<br /> : ISBN 978-1-4244-6920-8<br /> <br /> ;Manuel Graña, Carmen Hernández, Alicia D’Anjou, and Blanca Cases<br /> :Percolating Swarm Dynamics, [http://www.youtube.com/watch?v=PKN-n9XuU3k]<br /> :N. García-Pedrajas, F. Herrera, C. Fyfe, J.M. Benitez, M. Ali (eds.) Trends in Applied Intelligent Systems: Proc. IEA/AIE 2010, Part III, LNAI 6098, pp. 538–545<br /> :ISBN 978-3642130328<br /> <br /> ;Andoni Beristain Iraola, Manuel Graña Romay<br /> :Interactive Multimedia Tabletops (IMT) for Casual Users <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 681-688<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;R. Martínez, K. Lopez de Ipiña, E. Irigoyen, N. Asla, N. Garay, A. Ezeiza, I. Fajardo<br /> :Emotion Elicitation Oriented to the Development of a Human Emotion Management System for People with Intellectual Disabilities <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 689-696<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;N. Barroso, K. Lopez de Ipiña, A. Ezeiza<br /> :Acoustic Phonetic Decoding Oriented to MultilingualSpeech Recognition in the Basque Context <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 697-704<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;K. Lopez de Ipiña, M.C. Hernández, M. Graña, E. Martinez, C. Vaquero<br /> :A Computer-Aided Decision Support System for Shoulder Pain Pathology <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 705-712<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;A. Moujahid, A. D’Anjou, F.J. Torrealdea<br /> :Energy Cost Reduction in the Synchronization of a Pair of Nonidentical Coupled Hindmarsh-Rose Neurons <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 657-664<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;A. Conde, K. Lopez de Ipiña, M. Larrañaga, J.A. Elorriaga, J.M. Lopez, E. Irigoyen, N. Garay-Vitoria, A. Ezeiza, J. Rubio<br /> :An Intelligent Tutoring System Oriented to the Integration of People with Intellectual Disabilities<br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 639-647<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> : A color transformation for robust detection of color landmarks in robotic contexts<br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 665-672<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen, Ramon Moreno, Manuel Graña<br /> :Experiments on Robotic Multi-agent System for Hose Deployment and Transportation <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 573-580<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ; Manuel Graña, Blanca Cases, Carmen Hernandez, and Alicia D’Anjou<br /> :Further results on swarms solving Graph Coloring<br /> :D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part III, LNCS 6018, pp. 541--551. Springer, Heidelberg (2010)<br /> : ISBN 978-3-642-12178-4<br /> <br /> ; Andoni Beristain, Manuel Graña<br /> : An stable skeletonization for tabletop gesture recognition<br /> :D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part I, LNCS 6016, pp. 610--621. Springer, Heidelberg (2010)<br /> :ISBN 978-3-642-12155-5<br /> <br /> ==2009==<br /> <br /> ;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid<br /> :Computing the energy cost of the information transmitted by model biological neurons<br /> :AIP Conf. Proc., Volume 1148, Issue 1, August 13, 2009, Pages 250-253<br /> :ISBN: 978-0-7354-0685-8<br /> <br /> ;Iñigo Barandiaran and Charlotte Cottez and Céline Paloc and Manuel Graña<br /> :Comparative Evaluation of Random Forest and Fern Classifiers for Real-Time Feature Matching<br /> :Selected Readings in computer graphics, pp. 418-427<br /> : Fraunhofer Institute for Computer Graphics Research<br /> <br /> ;Jose Manuel Lopez-Guede, Manuel Graña, Ekaitz Zulueta, Oscar Barambones<br /> : Economical Implementation of Control Loops for Multi-Robot Systems <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4.<br /> :pp.1053-1059<br /> <br /> ;Zelmar Echegoyen, Alicia d’Anjou, Ivan Villaverde, Manuel Graña<br /> :Towards the adaptive control of a multirobot system for an elastic hose <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4. <br /> :pp. 1045-1052<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen and Manuel Graña<br /> :Neuro-Evolutive system for ego-motion estimation with a 3D camera. <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4.<br /> :pp 1021-1028<br /> <br /> ;Iván Macía Oliver, Jon Haitz Legarreta, Céline Paloc, Manuel Graña, Josu Maiora, Guillermo García<br /> :Segmentation of Abdominal Aortic Aneurysms in CT Images using a Radial Model Approach [[media:IMacia IDEAL2009 Segmentation of AAAs in CT Images.pdf|draft]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.664-671<br /> <br /> ;Josu Maiora, Guillermo García, Arantxa Tapia, Ivan Macía, Jon Haitz Legarreta, Manuel, Graña<br /> :Stent Graft Change Detection after Endovascular Abdominal Aortic Aneurysm Repair. [[media:IDEAL-2009-Maiora.pdf|draft]]<br /> :Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.656-663<br /> <br /> ;Iñigo Barandiaran, Iván Macía, Eva Berckmann, Diana Wald, Michael Pierre Dupillier, Celine Paloc, and Manuel Graña<br /> :An automatic segmentation and reconstruction of mandibular structures from CT-data [[media:IDEAL-2009-V3(No Software)Barandiaran.pdf|draft]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.649-655<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa, <br /> : Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection [[media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]] [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf | slides]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.641-648<br /> <br /> ; Blanca Cases, Abdelmalik Moujahid, Manuel Graña, Alicia d'Anjou<br /> :Chaotic patterns in crowd simulation<br /> : Proc ECAL 2009, pp ***<br /> : ISBN pending<br /> <br /> ;Manuel Graña, Maite Garcia-Sebastián, Carmen Hernandez<br /> : Lattice Independent Component Analysis for fMRI analysis [[media:Grana-icann-2009.pdf|draft]] [[media:ICANN-2009-Grana.pdf|slides]]<br /> : M. Polycarpou, C. Panayiotou, C. Alippi, G. Ellinas (Eds.), Artificial Neural Networks - ICANN 2009, LNCS 5768, Springer Verlag, pp.725-734<br /> : ISBN 978-3-642-04276-8<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d'Anjou,Carmen Hernandez<br /> : Bayesian Reflectance Component Separation. [[media:KES2009-DRM.pdf|draft]]<br /> : Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte II, LNCS 5712, Springer Verlag, pp.846-852<br /> : ISBN 978-3-642-04591-2<br /> <br /> ;Carlos Toro, Manuel Graña, Jorge Posada, Javier Vaquero, Cesar Sanin, Edward Szczerbicki<br /> : Domain modeling based on Engineering Standards. [[media:KES2009 ctoroV9.pdf|draft]]<br /> : Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte I, LNCS 5711, Springer Verlag, pp.95-102<br /> : ISBN 978-3-642-04594-3<br /> <br /> ;Ivan Villaverde, Manuel Graña<br /> :An Improved Evolutionary Approach for Egomotion Estimation with a 3D TOF Camera<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 390-398<br /> : ISBN 978-3-642-02266-1<br /> <br /> ; Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br /> : On the control of a multi-robot system for the manipulation of an elastic hose<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 382-389<br /> : ISBN 978-3-642-02266-1<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : Results of an Adaboost approach on Alzheimer's Disease detection on MRI [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf|slides]]<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 114-123<br /> : ISBN 978-3-642-02266-1<br /> <br /> ; Carlos Toro, Manuel Graña, Jorge Posada<br /> :An architecture for the Semantic Enhancement of Virtual Engineering Applications<br /> :Intelligent Systems for Knowledge Management, <br /> : Ngoc Thanh Nguyen and Edward Szczerbicki (Editors), pp.175-196, Springer Verlag 2009<br /> : ISBN 978-3-642-04169-3<br /> <br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> :On the Use of Morphometry Based Features for Alzheimer's Disease Detection on MRI. [http://www.springerlink.com/content/p101v5833k55512g/?p=d18ee031594e45ff9562cd2b97980b2c&amp;pi=119]<br /> :Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I)<br /> : Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964<br /> : ISBN 978-3-642-02477-1<br /> <br /> ;Manuel Graña, Iván Villaverde, Jose Manuel López Guede, Borja Fernández<br /> :Review of Hybridizations of Kalman Filters with Fuzzy and Neural Computing for Mobile Robot Navigation [[media:HAIS-2009-grana-kalman-draft.pdf|draft]] [[media:HAIS-2009-kalman-presentacion.pdf|slides]]<br /> : 4th International Conference on Hybrid Artificial Intelligent Systems (HAIS09)<br /> : E. Corchado, X. Wu, E. Oja, A. Herrero, B. Baruque (eds), Springer Verlad 2009, LNAI 5572, pp. 121-128<br /> : ISBN 978-3-642-02318-7<br /> <br /> ==2008==<br /> <br /> ;E. Irigoyen, K. L. de Ipiña, N. Garay, I. Fajardo, A. Goicoechea, A. Ezeiza, M. Peñagarikano, G. Bordel, A. Conde, M. Larrañaga, A. Arruti, L.J. Rodríguez, J.M. López, E. Zulueta, M. Graña, J. Rubio <br /> :A ROBUST INTELLIGENT SYSTEM FOR INTERACTING WITH PEOPLE WITH COGNITIVE DISABILITIES <br /> : INTED2008 Proceedings<br /> :L. Gómez Chova, D. Martí Belenguer, I. Candel Torres (eds)<br /> :International Association of Technology, Education and Development , IATED, Valencia <br /> :ISBN: 978-84-612-0190-7 <br /> <br /> ;B. Cases, C. Hernandez, M. Graña, A. d'Anjou.<br /> :On the ability of Swarms to compute the 3-coloring of graphs.<br /> :In S. Bullock, J. Noble, R. Watson, M.A. Bedau (Eds.), Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 102-109, MIT Press, 2008<br /> : ISBN 978-0-262-75017-2, <br /> <br /> ;Ivan Villaverde and Manuel Graña, <br /> : A Hybrid Intelligent System for Robot Ego Motion Estimation with a 3D Camera<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds), LNAI 5271, Springer Verlag pp: 657-664<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; Ramón Moreno, Alicia d’Anjou and Manuel Graña, <br /> :Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 665-672<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; José Manuel López-Guede, Manuel Graña and Ekaitz Zulueta, <br /> : On Distributed Cooperative Control for the Manipulation of a Hose by a Multirobot System<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 673-679<br /> : ISBN 978-3-540-87655-7<br /> <br /> ;R.J. Duro, M. Graña and J. de Lope, <br /> :On the need of Hybrid Intelligent Systems in Modular and Multi Robotics<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 641-648<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; Manuel Graña, Maite García-Sebastián, Ivan Villaverde, Elsa Fernandez<br /> : An approach from Lattice Computing to fMRI analysis [[Media:Proceedings-cla2008-workshop.pdf|pdf]]<br /> : LBM 2008 (CLA 2008), Proceedings of the Lattice-Based Modeling Workshop, Vassilis Kaburlasos, Uta Priss, Manuel Graña (eds), pp:33-44<br /> : ISBN 978–80–244–2112–4<br /> <br /> ; Miguel Angel Veganzones, Manuel Graña<br /> : Endmember extraction methods: a short review<br /> : I. Lovrek, R.J. Howlett, L.C. Jain (Eds.): KES 2008, Part III, LNAI 5179, pp:400-407; Springer-Verlag Berlin Heidelberg. 2008.<br /> : ISBN 978-3-540-85566-8<br /> <br /> ;M. Graña. <br /> :A Brief Review of Lattice Computing [[media:WWCI-2008-lattice-computing-review-draft.pdf|draft]]<br /> :Proceedings FUZZ-IEEE 2008, pp.1777-1781<br /> :ISBN 978-1-4244-1819-0<br /> <br /> ;Maite García-Sebastián, A. M. Savio, M. Graña. <br /> :Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm <br /> : Proceedings CEC 2008, pp.4146-4150<br /> :ISBN 978-1-4244-1822-0<br /> <br /> ;Diego Sal, Manuel Graña<br /> :''A Multiobjective Evolutionary Algorithm for Hyperspectral Image Watermarking''<br /> : Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.49-60<br /> : ISBN 978-3-540-79352-6<br /> <br /> ; Miguel Angel Veganzones, José Orlando Maldonado, Manuel Graña<br /> :''On Content-Based Image Retrieval Systems For Hyperspectral Remote Sensing Images''<br /> : Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.97-111<br /> : ISBN 978-3-540-79352-6<br /> <br /> ==2007==<br /> <br /> ; M. Graña<br /> :''State of the art in lattice computing for artificial intelligence applications''<br /> : Mathematical and Computational Models, R. Nadarajan R. Anitha, C. Porkodi (eds), pp. 233--242<br /> : New Delhi, India:Narosa Publishing House <br /> :ISBN 978-81-7319-882-3<br /> <br /> ;I. Villaverde, M. Graña, A. d'Anjou<br /> :''Morphological Independence for Landmark Detection in Vision Based SLAM''<br /> :Computational and ambient intelligence, F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds), LNCS 4507, Springer Verlag, Heidelberg, pp. 837-844<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br /> :ISBN 3-540-73006-0<br /> :ISSN 0302-9743<br /> <br /> ;Maite García-Sebastián, Ana I. Gonzalez, Manuel Graña<br /> :''Derivation of SOM-like rules for intensity inhomogeneity correction in MRI''<br /> :Computational and ambient intelligence (IWANN), F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds) LNCS 4507, Springer Verlag, Heidelberg, pp. 669-676, 2007.<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br /> :ISBN 3-540-73006-0<br /> :ISSN 0302-9743<br /> <br /> ;Manuel Graña, Ivan Villaverde, Ramon Moreno, Francisco X. Albizuri<br /> :''Convex coordinates from lattice independent sets for visual pattern recognition''<br /> :Computational Intelligence Based on Lattice Theory, G. Ritter, V. Kaburlasos (eds), Springer Verlag, pp: 99-126<br /> :ISBN 978-3-540-72686-9<br /> <br /> ;Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br /> :''Modeling a Legged Robot for Visual Servoing'' [[media:Presentacion-ICCSA-2007-zelmar.pdf|slides]] [[media:Iccsa-2007-aibo-zelmar.pdf|draft]]<br /> :Computational Science and Its Applications -- ICCSA 2007, Osvaldo Gervasi and Marina L. Gavrilova (eds) LNCS 4707, Springer Verlag, pp: 798-810<br /> :ISBN 978-3-540-74482-5<br /> <br /> ;Maite García-Sebastián, Manuel Graña<br /> :''SOM for intensity inhomogeneity correction in MRI''<br /> :ESANN 2007, M. Verleysen (ed), D-side Publications, pp: 109-114<br /> :ISBN 2-930307-07-2<br /> <br /> ;Ramon Moreno, Manuel Grana Romay, Miguel Angel Veganzones<br /> :''A Remote Mycological Assistant''<br /> :IDAACS'2007, Anatoly Sachenko, Peter J. A. Reusch, Richard Duro, Wieslaw Winiecki (eds), IEEE Press, pp. 408-412<br /> :ISBN 1-4244-1348-6<br /> <br /> ;I. Villaverde, M. Graña, J.L. Jimenez<br /> :''Lattice Independence and Vision Based Mobile Robot Navigation''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1196-1203<br /> :ISBN 978-3-540-74826-7<br /> <br /> ;Zelmar Echegoyen, Alicia d’Anjou, Manuel Graña <br /> :''Contribution to legged robot visual servoing''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1179-1186<br /> :ISBN 978-3-540-74826-7<br /> <br /> ;I. Cearreta, J.M. López, K. López de Ipiña, M. Hernandez, N. Garay, M. Graña, A. Álvarez<br /> :''Affective Computing as a component of Ambient Intelligence''<br /> :INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1580-1586<br /> :ISBN 978-981-270-967-7<br /> <br /> ;M. Graña, J.L. Jimenez, C. Hernandez<br /> :''Lattice Independence, Autoassociative Morphological Memories and unsupervised segmentation of Hyperspectral Images''<br /> :INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1624-1631<br /> :ISBN 978-981-270-967-7<br /> <br /> ;Jose Orlando Maldonado, David Vicente Herrera, Manuel Graña Romay<br /> :''Visual texture characterization of recycled paper quality''<br /> :Innovations in Hybrid Intellligent Systems, Advances in Soft Computing Vol. 44, Springer Verlag, pp: 288-295<br /> :ISBN 978-3-540-74971-4<br /> <br /> ; Israel Rebollo, Manuel Graña<br /> : Gestión Multiagente de Almacenes Usando RFID<br /> : 1 jornadas científicas sobre RFID, A. García, J. Bravo, R. Hervás, J.C. Encinas, Gabriel Chavira, Salvador W. Nava, J. M. Pastor, P. García, J. G.Escribano (EDS), pp. 7--12<br /> :ISBN 978-84-612-0542-4<br /> <br /> ==2006==<br /> <br /> ;Ana I. González, Alicia D’Anjou, Maite García-Sebastián, Manuel Graña <br /> :''SOM and Neural Gas as Graduated Nonconvexity Algorithms''<br /> :The 2006 International Conference on Computational Science and its Applications -- ICCSA 2006, M. Gavrilova et al.(Eds.) LNCS 3982, Springer Verlag, Berlin Heidelberg, ICCSA 2006, part III, pp. 1143-1152. JCR(2005) 0.402.<br /> :ISBN 3-540-34075-0<br /> <br /> ;C.Hernández, J. Gallego, Maite García-Sebastián, Manuel Graña Romay<br /> :''On Clustering Performance Indices for Multispectral Image''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, 10 International Conf. -- KES 2006, B. Gabrys, R. J. Howlett and L. C. Jain (Eds.) LNCS 4253, Springer Verlag, Berlin, KES 2006, Part III, pp. 277-283. JCR(2005) 0.402.<br /> :ISBN 978-3-540-46542-3<br /> <br /> ;José Orlando Maldonado, David Vicente, Miguel Angel Veganzones, Manuel Graña<br /> :[[Media:Jic07-maldonado.pdf | &quot;Spectral indexing for Hyperspectral image CBIR&quot;]]<br /> :ESA-EUSC 2006 Image Information Mining for Security and Intelligence Proceedings (WPP-274).<br /> <br /> ==2005==<br /> <br /> ;Maite García-Sebastián, E.Fernandez, M. Graña, F.J. Torrealdea <br /> :''A gradient descent MRI illumination correction algorithm''<br /> :Computational Intelligence an Bioinspired Systems -- IWANN 2005, F. Sandoval, A. Prieto, J. Cabestany (eds) LNCS 3512, Springer Verlag, Berlin, vol. 3512, pp. 913-920. JCR(2005) 0.402.<br /> :ISBN 3-540-26208-3</div>

Alexsavio https://ehu.eus/ccwintco/index.php?title=Cap%C3%AD%C2%ADtulos_de_Libro&diff=16755 2014-06-03T21:53:24Z

<p>Alexsavio: </p> <hr /> <div>== enviados ==<br /> <br /> ==2014==<br /> <br /> ;Alexandre Savio, Darya Chyzhyk, Manuel Graña<br /> ;Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br /> ;International Conference on Hybrid Artificial Intelligence Systems HAIS 14, Salamanca, Spain.<br /> <br /> <br /> ==2013==<br /> <br /> <br /> <br /> ;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, Manuel Graña<br /> :Empirical Study of the Sensitivity of CACLA to Sub-optimal Parameter Setting in Learning Feedback Controllers<br /> :International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 101-108, Springer<br /> : DOI 10.1007/978-3-319-01854-6_11<br /> <br /> ;Jose Manuel López-Guede, Jose Antonio Ramos-Hernanz, Manuel Graña <br /> : Artificial Neural Network Modeling of a Photovoltaic Module<br /> : International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 389-397<br /> : DOI 10.1007/978-3-319-01854-6_40<br /> : ISBN 978-3-319-01853-9<br /> <br /> <br /> ;Grana, M. ; Rebollo, I. <br /> : Instances of subconscious social intelligent computing<br /> : Computational Aspects of Social Networks (CASoN), 2013 Fifth International Conference on, 2013 , Page(s): 74 - 78<br /> : Digital Object Identifier: 10.1109/CASoN.2013.6622604 <br /> <br /> ;Grana, M. ; Rebollo, I. <br /> :Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem<br /> :Nature and Biologically Inspired Computing (NaBIC), 2013 World Congress on <br /> :Digital Object Identifier: 10.1109/NaBIC.2013.6617846 <br /> :Publication Year: 2013 , Page(s): 107 - 112<br /> <br /> <br /> ;M. Graña<br /> :Subconscious Social Computational Intelligence<br /> :Computational Intelligence, Cyber Security and Computational Models, Proceedings of ICC3, 2013 G. Sai Sundara Krishnan, R. Anitha, R. S. Lekshmi, M. Senthil Kumar, Anthony Bonato and Manuel Graña (eds) Advances in Intelligent Systems and Computing 246, Springer India 2014, Pages 15-21<br /> : ISBN: 978-81-322-1679-7 (Print) 978-81-322-1680-3 (Online)<br /> <br /> ; Darya Chyzhyk, Manuel Graña<br /> : Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br /> : Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br /> : Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br /> : DOI 10.1007/978-3-642-42017-7_10<br /> : Print ISBN 978-3-642-42016-0<br /> : Online ISBN 978-3-642-42017-7<br /> : Series ISSN 1865-0929<br /> <br /> ;Manuel Graña, Ion Marqués, Alexandre Savio, Bruno Apolloni,<br /> :A domestic application of Intelligent Social Computing: the SandS project <br /> : International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, A Herero et al. (eds) pp 221-228<br /> : Springer Verlag, Advances in Intelligent Systems and Computing, 239<br /> : ISBN 978-3-319-01853-9<br /> : DOI 10.1007/978-3-319-01854-6_23<br /> <br /> ; Manuel Graña, J. David Nuñez-Gonzalez, Bruno Apolloni<br /> : A discussion on trust requirements for a social network of eahoukers [http://link.springer.com/chapter/10.1007/978-3-642-40846-5_54]<br /> : J.-S. Pan et al. (Eds.): Hybrid Artificial Intelligent Systems HAIS 2013 Proceedings, LNAI 8073, pp. 540--547. Springer, Heidelberg (2013)<br /> :ISBN: 978-3-642-40845-8 (Print) 978-3-642-40846-5 (Online)<br /> <br /> ; Darya Chyzhyk and Manuel Graña<br /> : Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features<br /> : J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br /> : ISSN: 0302-9743 DOI 10.1007/978-3-642-40846-5_48<br /> <br /> ; M. Termenon, M. Graña, A. Besga, J. Echeveste, J. M. Pérez and A. M. Gonzalez-Pinto<br /> : Diagnosis of Bipolar Disorder based on Principal Component Analysis and Support Vector Machines over the MRI deformation Jacobian<br /> : Proceedings of the 8th International Conference on Computer Recognition Systems CORES 2013<br /> : Advances in Intelligent Systems and Computing Volume 226, 2013, pp 569-578<br /> : Print ISBN: 978-3-319-00968-1, Online ISBN: 978-3-319-00969-8<br /> : ISSN 2194-5357<br /> <br /> ;M. Graña, B. Apolloni, M. Fiasché, G. Galliani, C. Zizzo, G. Caridakis, G. Siolas, S. Kollias, F. Barriento, S. San Jose<br /> : Social and Smart: towards an instance of subconscious social intelligence [http://link.springer.com/chapter/10.1007/978-3-642-41016-1_32]<br /> : Proceedings IPMSC 2013 [http://delab.csd.auth.gr/eann2013/workshops.php?workshop_id=3]<br /> : L. Iliadis, H. Papadopoulos, and C. Jayne (Eds.): EANN 2013, Part II, CCIS 384, pp. 302–311, 2013<br /> : Springer<br /> : ISBN: 978-3-642-41015-4 (Print) 978-3-642-41016-1 (Online)<br /> <br /> ;Israel Rebollo, Manuel Graña<br /> : User assistance tool for a WebService ERP [http://link.springer.com/chapter/10.1007/978-3-319-00563-8_24]<br /> : Trends in Practical Applications of Agents and Multiagent Systems, Javier Bajo Perez et al. (eds.), Advances in Intelligent Systems and Computing Volume 221, 2013, pp 193-200<br /> : Springer <br /> : SBN: 978-3-319-00562-1 (Print) 978-3-319-00563-8 (Online)<br /> <br /> ;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, and Manuel Graña<br /> :An Empirical Study of Actor-Critic Methods for Feedback Controllers of Ball-Screw Drivers<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 441--450. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; Ion Marques and Manuel Graña<br /> :Greedy Sparsification WM Algorithm for Endmember Induction in Hyperspectral Images<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 336--344. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; Jose Manuel Lopez-Guede, Manuel Graña, Jose Antonio Ramos-Hernanz, and Fernando Oterino<br /> :A Neural Network Approximation of L-MCRS Dynamics for Reinforcement Learning Experiments<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 317--325. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br /> : Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br /> : ISSN 0302-9743<br /> <br /> ; Darya Chyzhyk and Manuel Graña<br /> : Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br /> : Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br /> : ISSN 0302-9743<br /> <br /> ;Borja Ayerdi, Alexandre Savio, and Manuel Graña<br /> :Meta-ensembles of Classifiers for Alzheimer's Disease Detection Using Independent ROI Features<br /> :J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122--130. Springer, Heidelberg (2013)<br /> : ISBN<br /> <br /> ; B. Apolloni, M. Fiasche, G. Galliani, C. Zizzo, G. Caridakis, G. Siola, S. Kollia, M. Grana Romay, F. Barriento, S. San Jose<br /> :Social Things - The SandS instantiation<br /> : IoT-SoS 2013<br /> : ISBN<br /> <br /> ; Alexandre Savio, Manuel Graña<br /> : ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br /> : IWANN 2013, Part II, LNCS 7903, pp. 107--114. Springer, Heidelberg (2013)<br /> : Eds.: I. Rojas, G. Joya, and J. Cabestany<br /> : [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br /> <br /> ; Ramon Moreno, Manuel Graña and Kurosh Madani<br /> : ''A robust color Watershed transformation and image segmentation defined on RGB Spherical Coordinates''<br /> : Robotic Vision: Technologies for Machine Learning and Vision Applications, pp112-128 <br /> : doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br /> <br /> ; J.M. Lopez-Guede, B. Fernandez-Gauna, R. Moreno and M. Graña,<br /> : ''Visual Detection in Linked Multi-Component Robotic Systems''<br /> : Robotic Vision: Technologies for Machine Learning and Vision Applications. pp78-97<br /> : doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br /> <br /> ==2012==<br /> ; Manuel Graña, Darya Chyzhyk<br /> : Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br /> : HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br /> : Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br /> : DOI: 10.1109/HIS.2012.6421391 <br /> : Print ISBN: 978-1-4673-5114-0<br /> <br /> ;Miguel A. Veganzones, Mihai Datcu, Manuel Graña.<br /> : &quot;Relevance feedback by dissimilarity spaces for hyperspectral CBIR.&quot; <br /> : [http://bookshop.europa.eu/is-bin/INTERSHOP.enfinity/WFS/EU-Bookshop-Site/en_GB/-/EUR/ViewPublication-Start?PublicationKey=LBNA25514 Proceedings of the ESA-EUSC-JRC 8th conference on image information mining, Knowledge discovery from earth observation data]. Edited by P. Soille, M. Iapaolo, P.G. Marchetti, and M. Datcu. European Comission. Pages: 1-5. 2012.<br /> : ISBN: 978-92-79-26419-1 ISSN: 1831-9424 DOI: 10.2788/49465<br /> <br /> ;V. Amarger, D. M. Ramík, C. Sabourin, K. Madani, R. Moreno, L. Rossi, M. Graña, <br /> :&quot;Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation: Application to Wildland Fires’ Outlines Extraction&quot;, <br /> :Proceedings of International conference on Image Processing Theory, Tools and Applications (IEEE-IPTA 2012), Istanbul, Turkey, October 15 - 18, pp. 19-24, 2012. [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/275/IPTA-2012-Paper-299-Final-PDF.pdf]<br /> :ISBN: 978-1-4673-2582-0<br /> <br /> ; Israel Rebollo and Manuel Graña<br /> : Dynamic Tabu Search for Non Stationary Social Network identification based on Graph Coloring<br /> : [http://www.springer.com/engineering/computational+intelligence+and+complexity/book/978-3-642-32921-0 Advances in Intelligent Systems and Computing][[media: israel_SOCO2012.pdf|Slides]]<br /> : Soft Computing Models in Industrial and Enviromental Applications, Vol. 188, pages 495 - 503, 2012.<br /> : Eds: Václav Snásel, Ajith Abraham and Emilio S. Corchado.<br /> : ISBN: 978-3-642-32921-0<br /> <br /> ; Alexandre Savio<br /> : Supervised classification using deformation-based features for Alzheimer’s disease detection on the OASIS cross-sectional database <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Eduardo Carrasco, Frank Guijarro<br /> : A Semantic Clinical Decision Support System: conceptual architecture and implementation guidelines<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1390 - 1399, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; G. García, J. Maiora, A. Tapia, M. De Blas<br /> : Computer-aided Diagnosis of Abdominal Aortic Aneurysm after Endovascular Repair Using Texture Analysis<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 716-725, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Darya Chyzhyk<br /> : Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Iñigo Barandiaran, John Congote, Jon Goenetxea, Oscar Ruiz<br /> : Evaluation of interest point detectors for image information extraction<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2170 - 2179, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Ramón Moreno, Alicia d'Anjou<br /> : Hyperspectral Image Segmentation by t-Watershed and Hyperspherical Coordinates<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2114 - 2121, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ekaitz Zulueta<br /> : Towards a real time simulation of Linked Multi-Component Robotic Systems<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2019 - 2027, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Iñigo Barandiaran, Grégory Maclair, Izaro Goienetxea, Carlos Jauquicoa, Manuel Graña<br /> : A Comparative Study of Classifier Ensembles for Karyotyping<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1400 - 1407, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; M. Termenon, E. Fernández, A. Barrós-Loscertales, J.C. Bustamante, C. Ávila<br /> : Impact of Analysis Circularity: a Case Study in Cocaine Addiction detection on MRI<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2201 - 2209, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbicki, Manuel Graña, Jorge Posada<br /> : Speed-up of a Knowledge-Based Clinical Diagnosis System using Reflexive Ontologies <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1480 - 1489, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Manuel Graña, Adrian Agreda<br /> : Trust in communication and multiagent systems <br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 816 - 822, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br /> <br /> ; Miguel A. Veganzones<br /> : On hyperspectral morphology by lattice auto-associative memories supervised orderings<br /> : [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br /> : Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2122-2129, 2012.<br /> : Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. <br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ramon Moreno, Manuel Graña<br /> : &quot;Visual Detection in Linked Multi-Component Robotic Systems&quot;<br /> : Published in: &quot;Robotic Vision: Technologies for Machine Learning and Vision Applications&quot;<br /> : Eds: Miguel Cazorla and Jose Garcia. IGI Global. <br /> : ISBN:<br /> <br /> ; M. Termenon, M. Graña, A. Barrós-Loscertales, J. C. Bustamante, C. Ávila.<br /> : &quot;Cocaine Dependent Classification using Brain Magnetic Resonance Imaging&quot; [http://www.springerlink.com/content/k54353335gx22208/]<br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAISTermenon2012_Presentacion.pdf|Slides]]<br /> : HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 448-454, 2012. LNCS 7209 <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Ion Marqués and Manuel Graña<br /> : &quot;Image Security and Biometrics: A Review&quot; [http://dx.doi.org/10.1007/978-3-642-28931-6_42 Doi] [[media:Hais survey 03-11-2011.pdf|draft]]<br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012.[[media: imarques-HAIS2012.pdf|Slides]]<br /> : HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 436-447, 2012. LNCS 7209 <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Miguel A. Veganzones and Manuel Graña<br /> : &quot;Hybrid computational methods for hyperspectral image analysis.&quot;<br /> : [http://www.springer.com/computer/ai/book/978-3-642-28930-9 HAIS 2012, Part II, LNCS 7209], pp. 424-435. 2012.<br /> <br /> ; Israel Rebollo, Manuel Graña<br /> : &quot;An empirical comparison of some approximate methods for Graph Coloring&quot; [[media: hais_israel.pdf|draft]] <br /> : Hybrid Artificial Intelligent Systems (HAIS 2012), Salamanca, Spain. March 28-30, 2012. <br /> : Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part I, pp. 600-609, 2012. LNCS 7208 <br /> : DOI: 10.1007/978-3-642-28942-2_54<br /> <br /> ; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br /> : A Novel Lattice Associative Memory Based on Dendritic Computing&quot; [[media: HAIS12-SS11-2169.pdf|draft]] <br /> : Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br /> : Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br /> : Series: Lecture Notes in Computer Science, Vol. 7209<br /> : Subseries: Lecture Notes in Artificial Intelligence<br /> : Eds.: Corchado Rodriguez, E.S.; Snasel, V.; Abraham, A.; Wozniak, M.; Grana, M.; Cho, S.-B. <br /> : ISBN: 978-3-642-28930-9<br /> <br /> ; Miguel A. Veganzones, Mihai Datcu, Manuel Graña<br /> : [[Media:ICPRAM_2012_-_veganzones.pdf | Dictionary based hyperspectral image retrieval]] <br /> : Proceedings of the [http://icpram.org 1st International Conference on Pattern Recognition Applications and Methods], pages 426-432. 2012.<br /> : DOI: 10.5220/0003861904260432<br /> : Copyright SciTePress<br /> <br /> ==2011==<br /> <br /> ; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br /> : Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br /> : 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br /> : Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br /> : Eds: José Manuel Ferrández, F. Javier Toledo, José Ramón Álvarez Sánchez, Félix de la Paz<br /> : Springer-Verlag Berlin, Heidelberg<br /> : ISBN: 978-3-642-21325-0<br /> <br /> ; Israel Rebollo and Manuel Graña.<br /> : &quot;Further results of Gravitational Swarm Intelligence for Graph Coloring&quot; [[media: nabic_israel.pdf|draft]]<br /> : Nature and Biologically Inspired Computing (NaBIC), 2011, Salamanca, Spain. 19-21 Oct. 2011<br /> : DOI: Digital Object Identifier: 10.1109/NaBIC.2011.6089456<br /> : Pages: 183-188<br /> : ISBN 978-1-4577-1122-0<br /> <br /> ; Israel Rebollo and Manuel Graña.<br /> : &quot;Gravitational Swarm Approach for Graph Coloring&quot;[[media: nicso_israel.pdf|draft]]<br /> : Proceedings of the [http://www.nicso2011.org/ NICSO 2011], Cluj-Napoca, Romania. Oct 20-22, 2011.<br /> : Studies in Computational Intelligence, 2011, Volume 387, 159-168, DOI: 10.1007/978-3-642-24094-2 <br /> : D.A. Pelta, N. Krasnogor, D. Dumitrescu, Camelia Chira and R. Lung (eds)<br /> : Publisher: Springer-Verlag Berlin / Heidelberg<br /> : ISBN 978-3-642-24093-5<br /> <br /> ; Maite Termenon, Ariadna Besga, Jon Echeveste, Ana Gonzalez-Pinto and Manuel Graña.<br /> : &quot;Alzheimer Disease Classification on Diffusion Weighted Imaging features&quot;<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6687/2011, 120-127, DOI: 10.1007/978-3-642-21326-7_14 <br /> : José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br /> : ISBN 978-3-642-21325-0<br /> <br /> ; Ion Marqués, Manuel Graña.<br /> : [[Media:iwinac2011_ion.pdf | &quot;Experiments on Lattice Independent Component Analysis for Face Recognition.&quot;]]<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6678, pp.286-294, DOI: [http://dx.doi.org/10.1007/978-3-642-21326-7_31 10.1007/978-3-642-21326-7].<br /> : J. Ferrández, J. Álvarez Sánchez, F. de la Paz and F. Toledo (eds)<br /> : ISBN 978-3-642-21325-0<br /> <br /> ; Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> : Deformation based features for Alzheimer's disease detection with linear SVM.; <br /> : Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br /> <br /> ; Miguel A. Veganzones, Manuel Graña.<br /> : [[Media:Whispers2011_veganzones.pdf | &quot;On the validation of a spectral/spatial CBIR system for hyperspectral images.&quot;]]<br /> : Proceedings of the [http://www.ieee-whispers.com/ 3rd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (IEEE-WHISPERS 2011)]. 2011.<br /> <br /> ; Avid Román-González, Miguel A. Veganzones, Manuel Graña, Mihai Datcu. <br /> : [[Media:esa2011_roman-gonzalez_veganzones.pdf | &quot;A novel data compression technique for remote sensing data mining.&quot;]]<br /> : Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br /> : P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 101-104<br /> : ISBN 978-92-79-19708-6<br /> <br /> ; Miguel A. Veganzones, Manuel Graña<br /> : [[Media:esa2011_veganzones_grana.pdf | &quot;Validation of remote sensing content-based information retrieval (RS-CBIR) systems upon scarce data.&quot;]]<br /> : Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br /> : P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 93-96<br /> : ISBN 978-92-79-19708-6<br /> <br /> ; Miguel A. Veganzones, Manuel Graña<br /> : [[Media:SOCO2011-veganzones-camera_ready.pdf | &quot;Validation of a Hyperspectral Content-Based Information Retrieval (RS-CBIR) System upon scarce data&quot;]]<br /> : Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br /> <br /> ; Darya Chyzhyk, Manuel Graña<br /> : Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br /> : Conference on Soft Computing Models in Industrial and Environmental Applications ([http://soco.usal.es/ SOCO 2011]), Salamanca, Spain. 6-8th April, 2011.<br /> : Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57<br /> : Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-19643-0<br /> <br /> ; Maite Termenon, Manuel Graña<br /> : Further results on Alzheimer Disease Detection on structural MRI features<br /> : Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br /> : Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 515-522, DOI: 10.1007/978-3-642-19644-7_54 <br /> : Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-19643-0<br /> <br /> ;Véronique Amarger, Dominik M. Ramík, Ramon Moreno, Lucile Rossi, Kurosh Madani, Manuel Graña<br /> :&quot;Wildland Fires’ Outlines Extraction a Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation Approach&quot; . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br /> <br /> ;Ramón Moreno, Manuel Graña, Dominik M. Ramík, Kurosh Madani<br /> :&quot;Image Segmentation by Spherical Coordinates&quot; . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> :&quot;A Hybrid Color Distance for Image Segmentation&quot;.Part II, Hybrid Artificial Intelligence Systems LNAI 6679, pp. 447–454, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] ISBN:978-3-642-21218-5<br /> <br /> ; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br /> : &quot;Empirical Study of Q-Learning Based Elemental Hose Transport Control&quot;.<br /> : Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br /> : Lecture Notes in Computer Science, 2011, Volume 6679/2011, 455-462, DOI: 10.1007/978-3-642-21222-2<br /> : Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21218-5<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> :&quot;A geometrical method of diffuse and specular image components separation&quot;. Advances in Computational Intelligence,Lecture Notes in Computer Science, 2011, Volume 6692/2011, 83-89, Eds:J.Cabestani, I.Rojas and G.Goya. DOI: 10.1007/978-3-642-21498-1_11 ISBN:978-3-642-21497-4<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> : &quot;Concurrent Modular Q-Learning with Local Rewards on Linked Multi-Component Robotic Systems&quot;<br /> : Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br /> : Lecture Notes in Computer Science, 2011, Volume 6686/2011, 148-155, DOI: 10.1007/978-3-642-21344-1_16 <br /> : Editors: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21343-4<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br /> : &quot;Towards concurrent Q-Learning on Linked Multi-Component Robotic Systems&quot;<br /> : Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br /> : Lecture Notes in Computer Science, 2011, Volume 6679/2011, 463-470, DOI: 10.1007/978-3-642-21222-2_56<br /> : Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br /> : Publisher: Springer Berlin / Heidelberg<br /> : ISBN: 978-3-642-21218-5<br /> <br /> ==2010==<br /> <br /> ;Moujahid, A.; d'Anjou, A.; Torrealdea, F.J.; Torrealdea, F.<br /> :Energetic considerations on the dynamics of Hodgkin-Huxley neurons<br /> :2010 Sixth International Conference on Natural Computation (ICNC 2010)<br /> :On page(s): 3156 - 3163<br /> :Location: Yantai, Shandong<br /> :ISBN: 978-1-4244-5958-2<br /> :INSPEC Accession Number: 11554266 <br /> <br /> ; Ion Marques, Manuel Graña<br /> : Face processing for security: a short review<br /> : A. Herrero, E. Corchado, C. Redondo, A. Alonso (eds) Computational Intelligence in Security for Information Systems 2010, Adv. Int. and Soft Computing, vol. 85, Springer Verlag, 2010<br /> : pp. 89-96<br /> : ISBN 978-3-642-16625-9<br /> <br /> ; Jose Manuel Lopez-Guede, Ekaitz Zulueta, Borja Fernández and Manuel Graña<br /> : Multi-Robot Systems Control Implementation<br /> : Suraiya Jabin (Ed.), Robot Learning, pp.137-150. Sciyo 2010.<br /> : ISBN 978-953-307-104-6<br /> <br /> ; C. Hernandez, H. Viana, M.A. Veganzones, L. Nunes, M. Graña, D. Lopes<br /> : Biomass estimation: a case study in a forest area of northern Portugal<br /> : D. Lopes et al. (eds) Mixed and pure forest in a changing world, <br /> : Univ. of Tras-os-Montes e Alto DOuro, (2010) ISBN 978-972-669-980-4<br /> <br /> ;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br /> :A Comparison of VBM results by SPM, ICA and LICA.<br /> :Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br /> : ISBN 978-3-642-13802-7<br /> <br /> ;Ivan Villaverde, Borja Fernandez-Gauna and Ekaitz Zulueta<br /> :''Lattice Independent Component Analysis for mobile robot localization''<br /> :In E. Corchado et al. (Eds.), The 5th International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), Part II, LNAI vol. 6077, pp. 335-342. Springer, Heidelberg, 2010. (ISBN 978-3-642-13802-7). [http://dx.doi.org/10.1007/978-3-642-13803-4_42 DOI]<br /> <br /> ;I. Macía, M. Graña, and C. Paloc<br /> :Towards a Proposal for a Vessel Knowledge Representation Model<br /> :R. Setchi et al. (Eds.): KNOWLEDGE-BASED AND INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS KES 2010, Part IV, LNAI 6279, pp. 80--87. Springer Heidelberg (2010)<br /> : ISBN-13 978-3-642-15383-9 <br /> : [[media:Kes-2010-i-macia.pdf|slides]]<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br /> :Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br /> :in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br /> :2010 Bentham Science Publishers<br /> <br /> ; Miguel A. Veganzones, Carmen Hernández<br /> :[[Media:Hais2010-veganzones.pdf | &quot;On the use of a hybrid approach to contrast Endemember Induction Algorithms&quot;]]<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.69 - 76 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br /> <br /> ; Ramón Moreno, J.M. López-Guede, Alicia d'Anjou<br /> : Hybrid Color Space Transformation to Visualize Color Constancy.<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.241 - 247 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br /> <br /> ; José Manuel López-Guede, Ekaitz Zulueta, Borja Fernández-Gauna<br /> : Neuronal Implementation of Predictive Controllers<br /> : Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.312 – 319 Vol. 2<br /> : ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_39<br /> <br /> ; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta<br /> : Linked Multicomponent Robotic Systems: Basic Assessment of Linking Element Dynamical Effect <br /> : Hybrid Artificial Intelligent Systems, Part I, Manuel Grana Romay; Emilio S. Corchado Rodriguez; Maite Garcia-Sebastian (Eds.), (LNCS/LNAI) Vol. 6076, Springer Verlag, 2010, pp.73 – 79<br /> : ISBN 978-3-642-13768-6 : DOI: 10.1007/978-3-642-13769-3_9<br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou <br /> : A image color Gradient Preserving Color constancy<br /> : FUZZ-IEEE 2010, IEEE catalog Number: CFP10FUZ-DVD pp.710-714, Barcelona, Spain ([[media:Wcci2010ramon.pdf |Download slides]])<br /> : ISBN 978-1-4244-6920-8<br /> <br /> ;Manuel Graña, Carmen Hernández, Alicia D’Anjou, and Blanca Cases<br /> :Percolating Swarm Dynamics, [http://www.youtube.com/watch?v=PKN-n9XuU3k]<br /> :N. García-Pedrajas, F. Herrera, C. Fyfe, J.M. Benitez, M. Ali (eds.) Trends in Applied Intelligent Systems: Proc. IEA/AIE 2010, Part III, LNAI 6098, pp. 538–545<br /> :ISBN 978-3642130328<br /> <br /> ;Andoni Beristain Iraola, Manuel Graña Romay<br /> :Interactive Multimedia Tabletops (IMT) for Casual Users <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 681-688<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;R. Martínez, K. Lopez de Ipiña, E. Irigoyen, N. Asla, N. Garay, A. Ezeiza, I. Fajardo<br /> :Emotion Elicitation Oriented to the Development of a Human Emotion Management System for People with Intellectual Disabilities <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 689-696<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;N. Barroso, K. Lopez de Ipiña, A. Ezeiza<br /> :Acoustic Phonetic Decoding Oriented to MultilingualSpeech Recognition in the Basque Context <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 697-704<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;K. Lopez de Ipiña, M.C. Hernández, M. Graña, E. Martinez, C. Vaquero<br /> :A Computer-Aided Decision Support System for Shoulder Pain Pathology <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 705-712<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;A. Moujahid, A. D’Anjou, F.J. Torrealdea<br /> :Energy Cost Reduction in the Synchronization of a Pair of Nonidentical Coupled Hindmarsh-Rose Neurons <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 657-664<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;A. Conde, K. Lopez de Ipiña, M. Larrañaga, J.A. Elorriaga, J.M. Lopez, E. Irigoyen, N. Garay-Vitoria, A. Ezeiza, J. Rubio<br /> :An Intelligent Tutoring System Oriented to the Integration of People with Intellectual Disabilities<br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 639-647<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br /> : A color transformation for robust detection of color landmarks in robotic contexts<br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 665-672<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen, Ramon Moreno, Manuel Graña<br /> :Experiments on Robotic Multi-agent System for Hose Deployment and Transportation <br /> : in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 573-580<br /> : ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br /> <br /> ; Manuel Graña, Blanca Cases, Carmen Hernandez, and Alicia D’Anjou<br /> :Further results on swarms solving Graph Coloring<br /> :D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part III, LNCS 6018, pp. 541--551. Springer, Heidelberg (2010)<br /> : ISBN 978-3-642-12178-4<br /> <br /> ; Andoni Beristain, Manuel Graña<br /> : An stable skeletonization for tabletop gesture recognition<br /> :D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part I, LNCS 6016, pp. 610--621. Springer, Heidelberg (2010)<br /> :ISBN 978-3-642-12155-5<br /> <br /> ==2009==<br /> <br /> ;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid<br /> :Computing the energy cost of the information transmitted by model biological neurons<br /> :AIP Conf. Proc., Volume 1148, Issue 1, August 13, 2009, Pages 250-253<br /> :ISBN: 978-0-7354-0685-8<br /> <br /> ;Iñigo Barandiaran and Charlotte Cottez and Céline Paloc and Manuel Graña<br /> :Comparative Evaluation of Random Forest and Fern Classifiers for Real-Time Feature Matching<br /> :Selected Readings in computer graphics, pp. 418-427<br /> : Fraunhofer Institute for Computer Graphics Research<br /> <br /> ;Jose Manuel Lopez-Guede, Manuel Graña, Ekaitz Zulueta, Oscar Barambones<br /> : Economical Implementation of Control Loops for Multi-Robot Systems <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4.<br /> :pp.1053-1059<br /> <br /> ;Zelmar Echegoyen, Alicia d’Anjou, Ivan Villaverde, Manuel Graña<br /> :Towards the adaptive control of a multirobot system for an elastic hose <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4. <br /> :pp. 1045-1052<br /> <br /> ;Ivan Villaverde, Zelmar Echegoyen and Manuel Graña<br /> :Neuro-Evolutive system for ego-motion estimation with a 3D camera. <br /> : Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br /> :ISBN 978-3-642-02489-4.<br /> :pp 1021-1028<br /> <br /> ;Iván Macía Oliver, Jon Haitz Legarreta, Céline Paloc, Manuel Graña, Josu Maiora, Guillermo García<br /> :Segmentation of Abdominal Aortic Aneurysms in CT Images using a Radial Model Approach [[media:IMacia IDEAL2009 Segmentation of AAAs in CT Images.pdf|draft]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.664-671<br /> <br /> ;Josu Maiora, Guillermo García, Arantxa Tapia, Ivan Macía, Jon Haitz Legarreta, Manuel, Graña<br /> :Stent Graft Change Detection after Endovascular Abdominal Aortic Aneurysm Repair. [[media:IDEAL-2009-Maiora.pdf|draft]]<br /> :Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.656-663<br /> <br /> ;Iñigo Barandiaran, Iván Macía, Eva Berckmann, Diana Wald, Michael Pierre Dupillier, Celine Paloc, and Manuel Graña<br /> :An automatic segmentation and reconstruction of mandibular structures from CT-data [[media:IDEAL-2009-V3(No Software)Barandiaran.pdf|draft]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.649-655<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa, <br /> : Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection [[media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]] [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf | slides]]<br /> : Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br /> : IISBN 978-3-642-04393-2<br /> :ISSN 0302-9743<br /> :pp.641-648<br /> <br /> ; Blanca Cases, Abdelmalik Moujahid, Manuel Graña, Alicia d'Anjou<br /> :Chaotic patterns in crowd simulation<br /> : Proc ECAL 2009, pp ***<br /> : ISBN pending<br /> <br /> ;Manuel Graña, Maite Garcia-Sebastián, Carmen Hernandez<br /> : Lattice Independent Component Analysis for fMRI analysis [[media:Grana-icann-2009.pdf|draft]] [[media:ICANN-2009-Grana.pdf|slides]]<br /> : M. Polycarpou, C. Panayiotou, C. Alippi, G. Ellinas (Eds.), Artificial Neural Networks - ICANN 2009, LNCS 5768, Springer Verlag, pp.725-734<br /> : ISBN 978-3-642-04276-8<br /> <br /> ;Ramón Moreno, Manuel Graña, Alicia d'Anjou,Carmen Hernandez<br /> : Bayesian Reflectance Component Separation. [[media:KES2009-DRM.pdf|draft]]<br /> : Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte II, LNCS 5712, Springer Verlag, pp.846-852<br /> : ISBN 978-3-642-04591-2<br /> <br /> ;Carlos Toro, Manuel Graña, Jorge Posada, Javier Vaquero, Cesar Sanin, Edward Szczerbicki<br /> : Domain modeling based on Engineering Standards. [[media:KES2009 ctoroV9.pdf|draft]]<br /> : Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte I, LNCS 5711, Springer Verlag, pp.95-102<br /> : ISBN 978-3-642-04594-3<br /> <br /> ;Ivan Villaverde, Manuel Graña<br /> :An Improved Evolutionary Approach for Egomotion Estimation with a 3D TOF Camera<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 390-398<br /> : ISBN 978-3-642-02266-1<br /> <br /> ; Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br /> : On the control of a multi-robot system for the manipulation of an elastic hose<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 382-389<br /> : ISBN 978-3-642-02266-1<br /> <br /> ;Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br /> : Results of an Adaboost approach on Alzheimer's Disease detection on MRI [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf|slides]]<br /> : J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 114-123<br /> : ISBN 978-3-642-02266-1<br /> <br /> ; Carlos Toro, Manuel Graña, Jorge Posada<br /> :An architecture for the Semantic Enhancement of Virtual Engineering Applications<br /> :Intelligent Systems for Knowledge Management, <br /> : Ngoc Thanh Nguyen and Edward Szczerbicki (Editors), pp.175-196, Springer Verlag 2009<br /> : ISBN 978-3-642-04169-3<br /> <br /> ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br /> :On the Use of Morphometry Based Features for Alzheimer's Disease Detection on MRI. [http://www.springerlink.com/content/p101v5833k55512g/?p=d18ee031594e45ff9562cd2b97980b2c&amp;pi=119]<br /> :Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I)<br /> : Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964<br /> : ISBN 978-3-642-02477-1<br /> <br /> ;Manuel Graña, Iván Villaverde, Jose Manuel López Guede, Borja Fernández<br /> :Review of Hybridizations of Kalman Filters with Fuzzy and Neural Computing for Mobile Robot Navigation [[media:HAIS-2009-grana-kalman-draft.pdf|draft]] [[media:HAIS-2009-kalman-presentacion.pdf|slides]]<br /> : 4th International Conference on Hybrid Artificial Intelligent Systems (HAIS09)<br /> : E. Corchado, X. Wu, E. Oja, A. Herrero, B. Baruque (eds), Springer Verlad 2009, LNAI 5572, pp. 121-128<br /> : ISBN 978-3-642-02318-7<br /> <br /> ==2008==<br /> <br /> ;E. Irigoyen, K. L. de Ipiña, N. Garay, I. Fajardo, A. Goicoechea, A. Ezeiza, M. Peñagarikano, G. Bordel, A. Conde, M. Larrañaga, A. Arruti, L.J. Rodríguez, J.M. López, E. Zulueta, M. Graña, J. Rubio <br /> :A ROBUST INTELLIGENT SYSTEM FOR INTERACTING WITH PEOPLE WITH COGNITIVE DISABILITIES <br /> : INTED2008 Proceedings<br /> :L. Gómez Chova, D. Martí Belenguer, I. Candel Torres (eds)<br /> :International Association of Technology, Education and Development , IATED, Valencia <br /> :ISBN: 978-84-612-0190-7 <br /> <br /> ;B. Cases, C. Hernandez, M. Graña, A. d'Anjou.<br /> :On the ability of Swarms to compute the 3-coloring of graphs.<br /> :In S. Bullock, J. Noble, R. Watson, M.A. Bedau (Eds.), Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 102-109, MIT Press, 2008<br /> : ISBN 978-0-262-75017-2, <br /> <br /> ;Ivan Villaverde and Manuel Graña, <br /> : A Hybrid Intelligent System for Robot Ego Motion Estimation with a 3D Camera<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds), LNAI 5271, Springer Verlag pp: 657-664<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; Ramón Moreno, Alicia d’Anjou and Manuel Graña, <br /> :Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 665-672<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; José Manuel López-Guede, Manuel Graña and Ekaitz Zulueta, <br /> : On Distributed Cooperative Control for the Manipulation of a Hose by a Multirobot System<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 673-679<br /> : ISBN 978-3-540-87655-7<br /> <br /> ;R.J. Duro, M. Graña and J. de Lope, <br /> :On the need of Hybrid Intelligent Systems in Modular and Multi Robotics<br /> : Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 641-648<br /> : ISBN 978-3-540-87655-7<br /> <br /> ; Manuel Graña, Maite García-Sebastián, Ivan Villaverde, Elsa Fernandez<br /> : An approach from Lattice Computing to fMRI analysis [[Media:Proceedings-cla2008-workshop.pdf|pdf]]<br /> : LBM 2008 (CLA 2008), Proceedings of the Lattice-Based Modeling Workshop, Vassilis Kaburlasos, Uta Priss, Manuel Graña (eds), pp:33-44<br /> : ISBN 978–80–244–2112–4<br /> <br /> ; Miguel Angel Veganzones, Manuel Graña<br /> : Endmember extraction methods: a short review<br /> : I. Lovrek, R.J. Howlett, L.C. Jain (Eds.): KES 2008, Part III, LNAI 5179, pp:400-407; Springer-Verlag Berlin Heidelberg. 2008.<br /> : ISBN 978-3-540-85566-8<br /> <br /> ;M. Graña. <br /> :A Brief Review of Lattice Computing [[media:WWCI-2008-lattice-computing-review-draft.pdf|draft]]<br /> :Proceedings FUZZ-IEEE 2008, pp.1777-1781<br /> :ISBN 978-1-4244-1819-0<br /> <br /> ;Maite García-Sebastián, A. M. Savio, M. Graña. <br /> :Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm <br /> : Proceedings CEC 2008, pp.4146-4150<br /> :ISBN 978-1-4244-1822-0<br /> <br /> ;Diego Sal, Manuel Graña<br /> :''A Multiobjective Evolutionary Algorithm for Hyperspectral Image Watermarking''<br /> : Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.49-60<br /> : ISBN 978-3-540-79352-6<br /> <br /> ; Miguel Angel Veganzones, José Orlando Maldonado, Manuel Graña<br /> :''On Content-Based Image Retrieval Systems For Hyperspectral Remote Sensing Images''<br /> : Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.97-111<br /> : ISBN 978-3-540-79352-6<br /> <br /> ==2007==<br /> <br /> ; M. Graña<br /> :''State of the art in lattice computing for artificial intelligence applications''<br /> : Mathematical and Computational Models, R. Nadarajan R. Anitha, C. Porkodi (eds), pp. 233--242<br /> : New Delhi, India:Narosa Publishing House <br /> :ISBN 978-81-7319-882-3<br /> <br /> ;I. Villaverde, M. Graña, A. d'Anjou<br /> :''Morphological Independence for Landmark Detection in Vision Based SLAM''<br /> :Computational and ambient intelligence, F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds), LNCS 4507, Springer Verlag, Heidelberg, pp. 837-844<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br /> :ISBN 3-540-73006-0<br /> :ISSN 0302-9743<br /> <br /> ;Maite García-Sebastián, Ana I. Gonzalez, Manuel Graña<br /> :''Derivation of SOM-like rules for intensity inhomogeneity correction in MRI''<br /> :Computational and ambient intelligence (IWANN), F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds) LNCS 4507, Springer Verlag, Heidelberg, pp. 669-676, 2007.<br /> :Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br /> :ISBN 3-540-73006-0<br /> :ISSN 0302-9743<br /> <br /> ;Manuel Graña, Ivan Villaverde, Ramon Moreno, Francisco X. Albizuri<br /> :''Convex coordinates from lattice independent sets for visual pattern recognition''<br /> :Computational Intelligence Based on Lattice Theory, G. Ritter, V. Kaburlasos (eds), Springer Verlag, pp: 99-126<br /> :ISBN 978-3-540-72686-9<br /> <br /> ;Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br /> :''Modeling a Legged Robot for Visual Servoing'' [[media:Presentacion-ICCSA-2007-zelmar.pdf|slides]] [[media:Iccsa-2007-aibo-zelmar.pdf|draft]]<br /> :Computational Science and Its Applications -- ICCSA 2007, Osvaldo Gervasi and Marina L. Gavrilova (eds) LNCS 4707, Springer Verlag, pp: 798-810<br /> :ISBN 978-3-540-74482-5<br /> <br /> ;Maite García-Sebastián, Manuel Graña<br /> :''SOM for intensity inhomogeneity correction in MRI''<br /> :ESANN 2007, M. Verleysen (ed), D-side Publications, pp: 109-114<br /> :ISBN 2-930307-07-2<br /> <br /> ;Ramon Moreno, Manuel Grana Romay, Miguel Angel Veganzones<br /> :''A Remote Mycological Assistant''<br /> :IDAACS'2007, Anatoly Sachenko, Peter J. A. Reusch, Richard Duro, Wieslaw Winiecki (eds), IEEE Press, pp. 408-412<br /> :ISBN 1-4244-1348-6<br /> <br /> ;I. Villaverde, M. Graña, J.L. Jimenez<br /> :''Lattice Independence and Vision Based Mobile Robot Navigation''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1196-1203<br /> :ISBN 978-3-540-74826-7<br /> <br /> ;Zelmar Echegoyen, Alicia d’Anjou, Manuel Graña <br /> :''Contribution to legged robot visual servoing''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1179-1186<br /> :ISBN 978-3-540-74826-7<br /> <br /> ;I. Cearreta, J.M. López, K. López de Ipiña, M. Hernandez, N. Garay, M. Graña, A. Álvarez<br /> :''Affective Computing as a component of Ambient Intelligence''<br /> :INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1580-1586<br /> :ISBN 978-981-270-967-7<br /> <br /> ;M. Graña, J.L. Jimenez, C. Hernandez<br /> :''Lattice Independence, Autoassociative Morphological Memories and unsupervised segmentation of Hyperspectral Images''<br /> :INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1624-1631<br /> :ISBN 978-981-270-967-7<br /> <br /> ;Jose Orlando Maldonado, David Vicente Herrera, Manuel Graña Romay<br /> :''Visual texture characterization of recycled paper quality''<br /> :Innovations in Hybrid Intellligent Systems, Advances in Soft Computing Vol. 44, Springer Verlag, pp: 288-295<br /> :ISBN 978-3-540-74971-4<br /> <br /> ; Israel Rebollo, Manuel Graña<br /> : Gestión Multiagente de Almacenes Usando RFID<br /> : 1 jornadas científicas sobre RFID, A. García, J. Bravo, R. Hervás, J.C. Encinas, Gabriel Chavira, Salvador W. Nava, J. M. Pastor, P. García, J. G.Escribano (EDS), pp. 7--12<br /> :ISBN 978-84-612-0542-4<br /> <br /> ==2006==<br /> <br /> ;Ana I. González, Alicia D’Anjou, Maite García-Sebastián, Manuel Graña <br /> :''SOM and Neural Gas as Graduated Nonconvexity Algorithms''<br /> :The 2006 International Conference on Computational Science and its Applications -- ICCSA 2006, M. Gavrilova et al.(Eds.) LNCS 3982, Springer Verlag, Berlin Heidelberg, ICCSA 2006, part III, pp. 1143-1152. JCR(2005) 0.402.<br /> :ISBN 3-540-34075-0<br /> <br /> ;C.Hernández, J. Gallego, Maite García-Sebastián, Manuel Graña Romay<br /> :''On Clustering Performance Indices for Multispectral Image''<br /> :Knowledge-Based Intelligent Information and Engineering Systems, 10 International Conf. -- KES 2006, B. Gabrys, R. J. Howlett and L. C. Jain (Eds.) LNCS 4253, Springer Verlag, Berlin, KES 2006, Part III, pp. 277-283. JCR(2005) 0.402.<br /> :ISBN 978-3-540-46542-3<br /> <br /> ;José Orlando Maldonado, David Vicente, Miguel Angel Veganzones, Manuel Graña<br /> :[[Media:Jic07-maldonado.pdf | &quot;Spectral indexing for Hyperspectral image CBIR&quot;]]<br /> :ESA-EUSC 2006 Image Information Mining for Security and Intelligence Proceedings (WPP-274).<br /> <br /> ==2005==<br /> <br /> ;Maite García-Sebastián, E.Fernandez, M. Graña, F.J. Torrealdea <br /> :''A gradient descent MRI illumination correction algorithm''<br /> :Computational Intelligence an Bioinspired Systems -- IWANN 2005, F. Sandoval, A. Prieto, J. Cabestany (eds) LNCS 3512, Springer Verlag, Berlin, vol. 3512, pp. 913-920. JCR(2005) 0.402.<br /> :ISBN 3-540-26208-3</div>

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