{"id":1483,"date":"2010-09-15T15:36:50","date_gmt":"2010-09-15T13:36:50","guid":{"rendered":"http:\/\/www.ehu.es\/sgi\/Arina\/?p=1483"},"modified":"2016-02-19T10:13:47","modified_gmt":"2016-02-19T08:13:47","slug":"1483","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/kalkulu-softwarea\/1483","title":{"rendered":"BEAST"},"content":{"rendered":"<h1>Informazio orokorra<\/h1>\n<p>BEAST 1.8.2 is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.<\/p>\n<h1>Nola erabili<\/h1>\n<p>input.xml sarrera fitxeroa exekutatzeko erabili:<\/p>\n<pre>\/software\/bin\/beast input.xml &gt; output.log<\/pre>\n<p>Beste BEAST instalatutako programak:<\/p>\n<p><code>beast, beauti, loganalyser, logcombiner <\/code>eta <code>treeannotator<\/code>.<\/p>\n<h1>Benchmark<\/h1>\n<p>Aurkezten ditugu zerbitzuko makinetan egindako benchamrk txikia BEASTeko errendimendua aztertzeko. Beast oso ondo eskalatzen du 8 koreetaraino. 16 koreak erabiltzea pena merezi dezake oso lan luzeetan denbora oraindik nahiko murrizten delako, baina efizienzia ez da jadanik oso ona.<\/p>\n<table border=\"1\" cellpadding=\"3\">\n<tbody>\n<tr>\n<td align=\"LEFT\"><strong>Koreak<\/strong><\/td>\n<td align=\"RIGHT\"><strong>Denbora (s)<br \/>\n<\/strong><\/td>\n<td align=\"RIGHT\"><strong>Efizienzia (%)<br \/>\n<\/strong><\/td>\n<\/tr>\n<tr>\n<td align=\"LEFT\">1<\/td>\n<td align=\"RIGHT\">12692<\/td>\n<td align=\"RIGHT\">100<\/td>\n<\/tr>\n<tr>\n<td align=\"LEFT\">4<\/td>\n<td align=\"RIGHT\">3573<\/td>\n<td align=\"RIGHT\">89<\/td>\n<\/tr>\n<tr>\n<td align=\"LEFT\">8<\/td>\n<td align=\"RIGHT\">1889<\/td>\n<td align=\"RIGHT\">84<\/td>\n<\/tr>\n<tr>\n<td align=\"LEFT\">16<\/td>\n<td align=\"RIGHT\">1200<\/td>\n<td align=\"RIGHT\">66<\/td>\n<\/tr>\n<tr>\n<td align=\"LEFT\">20<\/td>\n<td align=\"RIGHT\">1149<\/td>\n<td align=\"RIGHT\">55<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>&nbsp;<\/p>\n<h1>Informazio gehiago<\/h1>\n<p>BEAST programari buruz\u00a0<a href=\"http:\/\/beast.bio.ed.ac.uk\" target=\"_blank\">BEAST<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Informazio orokorra BEAST 1.8.2 is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/kalkulu-softwarea\/1483\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">BEAST<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[66],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/1483"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=1483"}],"version-history":[{"count":9,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/1483\/revisions"}],"predecessor-version":[{"id":8414,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/1483\/revisions\/8414"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=1483"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=1483"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=1483"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}