{"id":1643,"date":"2010-09-17T15:30:20","date_gmt":"2010-09-17T13:30:20","guid":{"rendered":"http:\/\/www.ehu.es\/sgi\/Arina\/?p=1643"},"modified":"2010-09-17T15:45:14","modified_gmt":"2010-09-17T13:45:14","slug":"wien2k-nola-bidali","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/arina_eu\/lanak-bidali\/wien2k-nola-bidali","title":{"rendered":"Wien2k Nola Bidali"},"content":{"rendered":"<p>WIEN2k programak fitxero berezia erabiltzen du lanak koletara bidaltzeko. Script hau bidaltzeko erabili<\/p>\n<p>qsub script_file<\/p>\n<p>run_lapw programa paraleloa egikaritzen duen\u00a0<a href=\"http:\/\/www.ehu.es\/sgi\/ARCHIVOS\/script_wien\" target=\"_top\">scriptaren plantilla<\/a><\/p>\n<pre>#!\/bin\/bash\r\n#PBS -l nodes=[val]:ppn=[val]\r\n#PBS -l walltime=[val]\r\n#PBS -l mem=[val]\r\n\r\n# Vamos a nuestro home\r\ncd $PBS_O_WORKDIR\r\n\r\n#Creamos el fichero .machines\r\ncat $PBS_NODEFILE |cut -c1-6 &gt;.machines_current\r\naa=$(wc -l .machines_current |cut -d \" \" -f 1)\r\necho '#' &gt; .machines\r\n\r\ni=1\r\nwhile [ $i -le $aa ];do\r\necho -n '1:' &gt;&gt;.machines\r\nhead -$i .machines_current |tail -1 &gt;&gt; .machines\r\nlet i=i+1\r\ndone\r\necho 'granularity:1' &gt;&gt;.machines\r\necho 'extrafine:1' &gt;&gt;.machines\r\n\r\n#Nuestro directorio de scratch\r\nscrt=\/scratch\/$USER\/$(echo $PBS_O_WORKDIR |xargs basename)\r\noutdir=bukatuta_$PBS_JOBID\r\nexport SCRATCH=$scrt\/scratch\r\n\r\n#Creamos el directorio\r\nmkdir $scrt\r\nmkdir $scrt\/scratch\r\n\r\n#Copiamos los archivos al directorio scratch\r\n#Usaremos cp -r $scrt para copiar tambi\u00c3\u00a9n subdirectorios.\r\ncp $PBS_O_WORKDIR\/* $scrt\r\ncp .machines $scrt\r\n\r\n#Nos movemos de directorio\r\ncd $scrt\r\n\r\n#Ejecutamos WIEN2k en paralelo\r\nrun_lapw -p\r\n#Movemos los archivos finales\r\nmkdir  $PBS_O_WORKDIR\/$outdir\r\nmv -f $scrt\/* $PBS_O_WORKDIR\/$outdir\r\nmv -f $scrt\/.machines $PBS_O_WORKDIR\/$outdir\r\n\r\n#Borramos el directorio\r\nrmdir $scrt\r\nrm .??*<\/pre>\n<p>#PBS-rekin hasten diren lerroak ilara-kudeatzailearentzako aginduak dira; hauek aukeratzen dituzte:<\/p>\n<p>nodes: [opcional] Kalkulu-nodoa aukeratzeko erabil daiteke (adibidea: [name]=cn14).<\/p>\n<p>mem: Kalkulatzeko gordetako RAM memoria, mb edo gb-tan neurtua (adibide: [val]=100mb).<\/p>\n<p>walltime: Mikroprozesadorean erreserbatutako denbora, ordua\/minutua\/segundoa formatuan (adibidea: [val]=24:00:00).<\/p>\n<p>#-rekin hasten diren gainerako lerroak komentarioak dira.<\/p>\n<p>Scriptean $USER aldagaiak erabiltzailearen izena bueltatzen du, $PBS_O_WORKDIR aldagaiak qsub agindua exekutatzen den lan-direktorioa eta $PBS_JOBID aldagaiak lanaren identifikazio-zenbakia.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>WIEN2k programak fitxero berezia erabiltzen du lanak koletara bidaltzeko. Script hau bidaltzeko erabili qsub script_file run_lapw programa paraleloa egikaritzen duen\u00a0scriptaren plantilla #!\/bin\/bash #PBS -l nodes=[val]:ppn=[val] #PBS -l walltime=[val] #PBS -l mem=[val] # Vamos a nuestro home cd $PBS_O_WORKDIR #Creamos el fichero .machines cat $PBS_NODEFILE |cut -c1-6 &gt;.machines_current aa=$(wc -l .machines_current |cut -d \u00bb \u00bb -f &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/arina_eu\/lanak-bidali\/wien2k-nola-bidali\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">Wien2k Nola Bidali<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[137,68],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/1643"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=1643"}],"version-history":[{"count":3,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/1643\/revisions"}],"predecessor-version":[{"id":1647,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/1643\/revisions\/1647"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=1643"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=1643"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=1643"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}