{"id":5893,"date":"2012-01-26T17:23:13","date_gmt":"2012-01-26T15:23:13","guid":{"rendered":"http:\/\/www.ehu.es\/sgi\/?p=5893"},"modified":"2012-01-26T17:28:20","modified_gmt":"2012-01-26T15:28:20","slug":"clumpp-2","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/scientific-software\/clumpp-2","title":{"rendered":"CLUMPP"},"content":{"rendered":"<h2>General information<\/h2>\n<p>1.1.3 version. CLUMPP <em> <\/em>is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. <em>CLUMPP<\/em> permutes the clusters output by independent runs of clustering programs such as <em><\/em>[intlink id=\u00bb5875&#8243; type=\u00bbpost\u00bb]structure[\/intlink],  so that they match up as closely as possible. The user has the option  of choosing one of three algorithms for aligning replicates, with a  tradeoff of speed and similarity to the optimal alignment.<\/p>\n<h2>How to use<\/h2>\n<p>To execute CLUMPP in the queue system you must include in the script of the queue system:<\/p>\n<pre>\/software\/bin\/CLUMPP<\/pre>\n<p>with the corresponding options of structure. We recommend to use  [intlink id=\u00bb233&#8243; type=\u00bbpost\u00bb]qsub in interactive mode[\/intlink] to  submit the jobs<\/p>\n<p>&nbsp;<\/p>\n<h2>More information<\/h2>\n<p><a href=\"http:\/\/www.stanford.edu\/group\/rosenberglab\/clumpp.html\" target=\"_blank\">CLUMPP web page<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>General information 1.1.3 version. CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as [intlink id=\u00bb5875&#8243; type=\u00bbpost\u00bb]structure[\/intlink], so that they match up as closely as possible. The user has the option of choosing one of three &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/scientific-software\/clumpp-2\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">CLUMPP<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[239,196],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/5893"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=5893"}],"version-history":[{"count":3,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/5893\/revisions"}],"predecessor-version":[{"id":5903,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/5893\/revisions\/5903"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=5893"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=5893"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=5893"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}