{"id":6021,"date":"2012-02-21T13:26:50","date_gmt":"2012-02-21T11:26:50","guid":{"rendered":"http:\/\/www.ehu.es\/sgi\/?p=6021"},"modified":"2012-02-21T13:27:22","modified_gmt":"2012-02-21T11:27:22","slug":"blast-3","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/scientific-software\/blast-3","title":{"rendered":"BLAST"},"content":{"rendered":"<h2>General Information<\/h2>\n<p>2.2.24 version of BLAST de NCBI. Due to performance reasons it has not been installed in Itanium nodes.<\/p>\n<p>&nbsp;<\/p>\n<h2>Data bases<\/h2>\n<p>The Service has installed several data bases, contact the <a href=\"..\/..\/\" target=\"_blank\">technicians<\/a> to use them or install new ones.<\/p>\n<h2>How to use<\/h2>\n<p>To submit jobs to the queue system <strong>we strongly recomend to use the command<\/strong><\/p>\n<pre>send_blast<\/pre>\n<p>it will make some questions to prepare the job<\/p>\n<h2>Performance and gpuBLAST<\/h2>\n<p>We have compared BLAST with mpiBLAST and gpuBLAST, the result of the bechmarks are in the <a title=\"Benchmark\" href=\"https:\/\/www.ehu.es\/ehusfera\/hpc\/2012\/02\/21\/rendimiento-de-diferentes-implementaciones-de-blast\/\" target=\"_blank\">blog of Service<\/a>. [intlink id=\u00bb1495&#8243; type=\u00bbpost\u00bb target=\u00bb_blank\u00bb]mpiBLAST[\/intlink] is installed in the Service.<\/p>\n<p>&nbsp;<\/p>\n<h2>More information<\/h2>\n<p><a title=\"ncbi blast\" href=\"http:\/\/blast.ncbi.nlm.nih.gov\/\" target=\"_blank\">BLAST web page<\/a>.<\/p>\n<p>[intlink id=\u00bb1493&#8243;  type=\u00bbpost\u00bb]Blast2GO[\/intlink] y [intlink id=\u00bb1495&#8243; type=\u00bbpost\u00bb  target=\u00bb_blank\u00bb]mpiBLAST[\/intlink] is also installed.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>General Information 2.2.24 version of BLAST de NCBI. Due to performance reasons it has not been installed in Itanium nodes. &nbsp; Data bases The Service has installed several data bases, contact the technicians to use them or install new ones. How to use To submit jobs to the queue system we strongly recomend to use &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/scientific-software\/blast-3\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">BLAST<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[239,196],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/6021"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=6021"}],"version-history":[{"count":4,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/6021\/revisions"}],"predecessor-version":[{"id":9167,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/6021\/revisions\/9167"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=6021"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=6021"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=6021"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}