Versi\u00f3n 1.2.03. Velvet is a set of algorithms manipulating de Bruijn graphs for genomic and de novo transcriptomic Sequence assembly. It was designed for short read sequencing technologies, such as Solexa or 454 Sequencing and was developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute<\/a>. The tool takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired-end read and long read information, when available, to retrieve the repeated areas between contigs.<\/p>\n Leer tambi\u00e9n sobre [intlink id=\u00bb6111″ type=\u00bbpost\u00bb]ABySS[\/intlink] y el art\u00edculo que hemos publicado<\/a> comparando ambos.<\/p>\n Para ejecutar Velvet ha sido compilado con soporte paralelo a trav\u00e9s de OpenMP. Hemos medido el rendimiento y los resultados est\u00e1n disponibles en la memoria\u00a0Velvet performance in the machines of the Computing Service of the UPV\/EHU<\/em><\/a>. Velvet usa una enorme cantidad de memoria RAM para grandes c\u00e1lculos y tambi\u00e9n la hemos medido. Hemos obtenido unas simples f\u00f3rmulas para predecir el uso de memoria RAM en funci\u00f3n de los ficheros de entrada de modo que el investigador pueda planificar su investigaci\u00f3n.<\/p>\n Leer tambi\u00e9n sobre [intlink id=\u00bb6111″ type=\u00bbpost\u00bb]ABySS[\/intlink] y el art\u00edculo que hemos publicado<\/a> comparando ambos.<\/p>\n P\u00e1gina web de Velvet<\/a>. Informaci\u00f3n general Versi\u00f3n 1.2.03. Velvet is a set of algorithms manipulating de Bruijn graphs for genomic and de novo transcriptomic Sequence assembly. It was designed for short read sequencing technologies, such as Solexa or 454 Sequencing and was developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute. The tool takes in short … Seguir leyendo Velvet<\/span> C\u00f3mo usar<\/h2>\n
velveth<\/code> o velvetg<\/code> en el sistema de colas Torque a\u00f1adir en los scripts:<\/p>\n\/software\/bin\/velvet\/velveth [opciones de velvet]<\/pre>\n
\/software\/bin\/velvet\/velvetg [opciones de velvet]<\/pre>\n
Rendimiento<\/h2>\n
M\u00e1s informaci\u00f3n<\/h2>\n
\nMemoria sobre el rendimiento Velvet performance in the machines of the Computing Service of the UPV\/EHU<\/a>.
\nEntrada en el blog hpc<\/a>: Velvet performance in the machines of the Computing Service of the UPV\/EHU<\/a>.<\/p>\n