{"id":7700,"date":"2015-06-08T10:07:46","date_gmt":"2015-06-08T08:07:46","guid":{"rendered":"http:\/\/www.ehu.eus\/sgi\/?p=7700"},"modified":"2015-08-04T09:15:06","modified_gmt":"2015-08-04T07:15:06","slug":"usearch","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/software-de-calculo\/usearch","title":{"rendered":"USEARCH"},"content":{"rendered":"<h2>Informaci\u00f3n general<\/h2>\n<p><span class=\"Text\">USEARCH is a unique sequence analysis tool\u00a0 that offers search and clustering algorithms that are often orders of magnitude faster than BLAST. Tenemos la versi\u00f3n de 32 bits que es gratuita, pero no distribuible a terceros y tiene la limitaci\u00f3n de 4 GB de RAM como m\u00e1ximo.<br \/>\n<\/span><\/p>\n<h2>C\u00f3mo usar<\/h2>\n<p>Para ejecutar USEARCH ejecutar en los scripts el comando<\/p>\n<pre>\/software\/bin\/usearch<\/pre>\n<p>por ejemplo<\/p>\n<pre>\/software\/bin\/usearch -cluster_otus data.fa -otus otus.fa -uparseout out.up -relabel OTU_ -sizein -sizeout<\/pre>\n<p>Por el momento USEARCH solo est\u00e1 disponible en los nodos con etiqueta <em>xeon20<\/em>.<\/p>\n<h2>QIIME<\/h2>\n<p>USEARCH puede ser empleado bajo [intlink id=\u00bb7686&#8243; type=\u00bbpost\u00bb]QIIME[\/intlink].<\/p>\n<h2>M\u00e1s informaci\u00f3n<\/h2>\n<p><a href=\"http:\/\/www.drive5.com\/usearch\/\" target=\"_blank\">USEARCH home page<\/a>.<\/p>\n<p>[intlink id=\u00bb7686&#8243; type=\u00bbpost\u00bb]QIIME[\/intlink].<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Informaci\u00f3n general USEARCH is a unique sequence analysis tool\u00a0 that offers search and clustering algorithms that are often orders of magnitude faster than BLAST. Tenemos la versi\u00f3n de 32 bits que es gratuita, pero no distribuible a terceros y tiene la limitaci\u00f3n de 4 GB de RAM como m\u00e1ximo. C\u00f3mo usar Para ejecutar USEARCH ejecutar &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/software-de-calculo\/usearch\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">USEARCH<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[176,3],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/7700"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=7700"}],"version-history":[{"count":5,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/7700\/revisions"}],"predecessor-version":[{"id":7901,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/7700\/revisions\/7901"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=7700"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=7700"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=7700"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}