{"id":7744,"date":"2015-06-08T10:13:23","date_gmt":"2015-06-08T08:13:23","guid":{"rendered":"http:\/\/www.ehu.eus\/sgi\/?p=7744"},"modified":"2015-08-04T09:13:09","modified_gmt":"2015-08-04T07:13:09","slug":"usearch-2","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/scientific-software\/usearch-2","title":{"rendered":"USEARCH"},"content":{"rendered":"<h2>General information<\/h2>\n<p><span class=\"Text\">USEARCH is a unique sequence analysis tool that offers search and clustering algorithms that are often orders of magnitude faster than BLAST. We have the free 32 bits version that can not be distributed to third parties and has a 4 GB of RAM limitation.<br \/>\n<\/span><\/p>\n<h2>How to use<\/h2>\n<p>To use USEARCH execute<\/p>\n<pre>\/software\/bin\/usearch<\/pre>\n<p>for example<\/p>\n<pre>\/software\/bin\/usearch -cluster_otus data.fa -otus otus.fa -uparseout out.up -relabel OTU_ -sizein -sizeout<\/pre>\n<p>USEARCH is only available in the <em>xeon20<\/em> type nodes.<\/p>\n<h2>QIIME<\/h2>\n<p>USEARCH can be use under [intlink id=\u00bb7758&#8243; type=\u00bbpost\u00bb]QIIME[\/intlink].<\/p>\n<h2>More information<\/h2>\n<p><a href=\"http:\/\/www.drive5.com\/usearch\/\" target=\"_blank\">USEARCH home page<\/a>.<\/p>\n<p>[intlink id=\u00bb7686&#8243; type=\u00bbpost\u00bb]QIIME[\/intlink].<\/p>\n","protected":false},"excerpt":{"rendered":"<p>General information USEARCH is a unique sequence analysis tool that offers search and clustering algorithms that are often orders of magnitude faster than BLAST. We have the free 32 bits version that can not be distributed to third parties and has a 4 GB of RAM limitation. How to use To use USEARCH execute \/software\/bin\/usearch &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/scientific-software\/usearch-2\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">USEARCH<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[239,196],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/7744"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=7744"}],"version-history":[{"count":6,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/7744\/revisions"}],"predecessor-version":[{"id":7899,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/7744\/revisions\/7899"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=7744"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=7744"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=7744"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}