SPAdes 3.6.0 \u2013 St. Petersburg genome assembler \u2013 is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. You can also provide additional contigs that will be used as long reads. Supports paired-end reads, mate-pairs and unpaired reads. SPAdes can take as input several paired-end and mate-pair libraries simultaneously. Note, that SPAdes was initially designed for small genomes. It was tested on single-cell and standard bacterial and fungal data sets.<\/p>\n
Para enviar trabajos a la cola se puede usar el comando<\/p>\n
send_spades<\/pre>\nque realiza unas preguntas para configurar el c\u00e1lculo.<\/p>\n
Rendimiento<\/h2>\n
No se ha medido ninguna mejora ni reducci\u00f3n del tiempo de c\u00e1lculo configurando m\u00e1s de un core en un tipo de c\u00e1lculo:<\/p>\n
spades.py -pe1-1 file1 -pe1-2 file2 -o outdir<\/pre>\nRecomendamos usar 1 core a menos que se sepa que se va a obtener un mejor rendimiento con m\u00e1s cores.<\/p>\n
M\u00e1s informaci\u00f3n<\/h2>\n
P\u00e1gina web de SPAdes<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"
Informaci\u00f3n general SPAdes 3.6.0 \u2013 St. Petersburg genome assembler \u2013 is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. You can also provide additional contigs that will be used as long reads. … Seguir leyendo SPAdes<\/span>