{"id":8635,"date":"2017-02-10T16:22:01","date_gmt":"2017-02-10T14:22:01","guid":{"rendered":"http:\/\/www.ehu.eus\/sgi\/?p=8635"},"modified":"2017-03-14T15:44:31","modified_gmt":"2017-03-14T13:44:31","slug":"r-2","status":"publish","type":"post","link":"https:\/\/www.ehu.eus\/sgi\/software-de-calculo\/r-2","title":{"rendered":"R, RCommander and RStudio"},"content":{"rendered":"<h2>General information<\/h2>\n<p>R 3.3.3 is a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.<\/p>\n<p>RStudio an RCommander are a graphical front ends for R.<\/p>\n<h2>Installed packages<\/h2>\n<p>abind, ape, biomformat, cummeRbund, DCGL, DESeq2, DEXSeq, e1071, edgeR, FactoMineR, GEOquery, lavaan, metagenomeSeq, mnormt, optparse, psych, randomForest, Rcmdr, RColorBrewer, ReactomePA, RUVSeq, vegan, WGCNA, xlsx.<\/p>\n<p>Please, ask if you need any more.<\/p>\n<h2>How to use it<\/h2>\n<p>To use\u00a0R in the queue scripts execute:<\/p>\n<pre>\/software\/bin\/R CMD BATCH\u00a0 R-input-file.R<\/pre>\n<p>to execute RStudio you must connect to Txinparta or Katramila with X2Go and execute<\/p>\n<pre>rstudio<\/pre>\n<p>to execute RCommander you must connect to Txinparta or Katramila with X2Go and execute R. Then inside R load<\/p>\n<pre>library(Rcmdr)<\/pre>\n<h2>More information<\/h2>\n<p><a href=\"https:\/\/www.r-project.org\/\" target=\"_blank\">R web page.<\/a><\/p>\n<p><a href=\"https:\/\/www.rstudio.com\/\" target=\"_blank\">rstudio web page<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>General information R 3.3.3 is a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information. RStudio an RCommander are a graphical front ends &hellip; <a href=\"https:\/\/www.ehu.eus\/sgi\/software-de-calculo\/r-2\" class=\"more-link\">Seguir leyendo <span class=\"screen-reader-text\">R, RCommander and RStudio<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_links_to":"","_links_to_target":""},"categories":[176,166,3],"tags":[],"_links":{"self":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/8635"}],"collection":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/comments?post=8635"}],"version-history":[{"count":9,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/8635\/revisions"}],"predecessor-version":[{"id":8680,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/posts\/8635\/revisions\/8680"}],"wp:attachment":[{"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/media?parent=8635"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/categories?post=8635"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ehu.eus\/sgi\/wp-json\/wp\/v2\/tags?post=8635"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}