[Profile] 

Title="An example to perform a Mantel test on 3 user-defined matrices" 
     #We must define at least one sample in the project even if we do not use it for the Mantel test
     NbSamples= 1        
     DataType= DNA
     GenotypicData= 0
     LocusSeparator= NONE
     GameticPhase= 1
     RecessiveData= 0
     RecessiveAllele="null"
     MissingData= '?'
	 
[Data] 

[[Samples]] 

	SampleName="Minimal sample required to perform mantel test" 
	SampleSize= 1
	SampleData= {
	1 1 A
 	} 

[[Mantel]]
	#size of the distance matrix:
	Matrixsize= 5
	#number of matrixes involved in calculations: 2 or 3
	MatrixNumber=3
	#YMatrix will be defined hereafter
	Ymatrix="Custom"
	#Labels to identify matrix entry and Population
	YmatrixLabels={
		"1" "2" "3"
		"4" "5"
	}
	
	#Y matrix
	DistmatMantel={
  		0.00 
  		1.20 0.00
  		1.17 0.84 0.00
  		1.00 1.23 0.23 0.00 
  		2.12 0.44 0.21 0.12 0.00
	}
	
	#X1 matrix
	DistMatMantel={
  		0.00
  		3.20 0.00
  		2.23 1.73 0.00
  		2.55 2.23 0.35 0.00 
  		2.23 1.62 1.54 2.32 0.00
	}
	
	#X2 Matrix
	DistMatMantel={
  		0.00
  		2.20 0.00
  		1.23 0.73 0.00
  		1.55 1.23 0.35 0.00 
  		1.23 0.62 0.54 1.32 0.00
	}
	#Possibility to compute the correlation on a subset of the matrix
	UsedYmatrixLabels={
		"1" "2"	"3"	"4" "5"
	}
	


