Diferencia entre revisiones de «Usuario:Alexsavio»
De Grupo de Inteligencia Computacional (GIC)
(No se muestran 310 ediciones intermedias de 3 usuarios) | |||
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== | [[File:Alex_profile_summer.png | frame | right | alt=My photo here | Outside]] | ||
[[File:Anat_alex.png | thumb | right | alt=My MRI here | 800px | Inside]] | |||
* Contact: [[Imagen:Alex email.png]] | |||
* My PGP key: [[alexsavio_pgp.key]] | |||
[http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&art_id=328 Material] | |||
[http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&art_id=422 Seguimientos] | |||
[http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&art_id=382 Pedradas] | |||
[http://www.ehu.es/ccwintco/index.php/Surveys Surveys (wiki under construction)] | |||
[ | [http://www.ehu.es/ccwintco/index.php/friday_sessions Friday Sessions] | ||
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== Alexandre Manhães Savio == | |||
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* | * PhD Thesis: ''Experiments of Machine Learning for Neurodiagnosis''. Director: Prof. Manuel Graña Romay. 08/Nov/2013 | ||
: [[media:Alex-Savio-thesis final with covers.pdf | PhD thesis]] | |||
: [[Imagen:Cover_small.png | 200px]] | |||
: [[media:Alex_thesis_slides.pdf | Dissertation slides]] | |||
* | * January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes. | ||
* Information Engineer (October 2006) - University of the Basque Country | |||
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Work Experience | Work Experience | ||
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* November/2018 - present - Cloud Applications Developer in Nordcloud Deutschland GmbH, München. | |||
* November/2017 - present - Part-time post-doctoral researcher in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München'''. | |||
* November/2017 - October/2018 - Engineer in Siemens AG, München. | |||
* April/2017 - October/2017 - IT Architect for MaibornWolff Gmbh, München. | |||
* October/2015 - March/2017 - Post-doctoral research in the '''Nuclear Medicine Department''' of the '''Klinikum rechts der Isar - Technische Universität München''', Ismaninger Str. 22, 81675 Munich, Germany, | |||
:multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016. | |||
* January/2015 - October/2015 - Post-doctoral researcher for the European '''ENGINE Project''' at the '''Wrocław University of Technology''', Poland. | |||
:collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer. | |||
* December/2013 - December/2014 - Post-doctoral researcher at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country | |||
:collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer. | |||
* January/2010 - November/2013 - PhD Student in the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government. | |||
: Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models. | |||
* February/2008 - December/2009 - Research assistant at the '''Computational Intelligence Group''' of the '''Computer Science and Artificial Intelligence department''' - University of the Basque Country | |||
:MR image processing and application of classification algorithms for the detection of brain neuronal disorders. | |||
* April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain. | * April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain. | ||
:Java, Spring Framework, Hibernate, C/C++, GTK | :Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB | ||
* July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain. | * July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain. | ||
:C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration | :C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration | ||
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Courses | Courses | ||
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* 7th-11th | * July 7th-11th, 2008 - AERFAI Summer School - [http://www.cvc.uab.es/aerfaiss08/ PRMA'08] - Pattern Recognition for Motion Analysis in the [http://www.cvc.uab.es/ Computer Vision Center] of the Universidad Autónoma de Barcelona. | ||
* July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - [http://nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php Two-Week Multi-Modality Short Course] | |||
* | * May 31st - June 4th, 2010 - [http://www.fmrib.ox.ac.uk/fslcourse FSL Course] organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg & Würzburg Universities in Heidelberg, Germany. | ||
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Internships | |||
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* January 24th - July 31st, 2011 - [http://www.fmrib.ox.ac.uk/ FMRIB], University of Oxford, UK with Dr. Saad Jbabdi. On ball&stick diffusion models for multishell HARDI and model selection. | |||
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== Software == | |||
* [https://github.com/neurita/pypes Pypes]: a Python module based on Nipype for multimodal neuro-image pre-processing. | |||
* [https://github.com/alexsavio/aizkolari#aizkolari Aizkolari tools]: a ZIP file with the repository on Sept 20th, 2013. [[Media:Aizkolari-master.zip | click here]] | |||
* [https://github.com/alexsavio My github homepage] | |||
* [https://github.com/neurita Neurita free software packages] | |||
* [http://alexsavio.github.io/ Interlines] (my blog) | |||
* 19-10-12 [[Tutorial_Python_Alex_19-10-12 | Tutorial sobre Python y scikit-learn]] | |||
* Copies of some software in my GitHub account: | |||
'' [[Media:Visualize_volume-master.zip | visualize_volume]] | |||
'' [[Media:Oasis_aal-master.zip | OASIS_AAL]] | |||
'' [[Media:Oasis_feets-master.zip | OASIS_feets]] | |||
== Publications == | == Publications == | ||
[[Media:Alexsavio_references.bib.zip | BibTex File]] | [[Media:Alexsavio_references.bib.zip | BibTex File]] | ||
[[GIC-experimental-databases | Post-processed datasets from the work done in the group.]] | |||
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2017 | |||
</h3> | |||
; Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev | |||
: ''Resting state networks as simultaneously measured with fMRI and PET'' | |||
: The Journal of Nuclear Medicine, First published March 2, 2017, | |||
: doi: 10.2967/jnumed.116.185835 | |||
: http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract | |||
; Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev | |||
: ''Pypes: Workflows for Processing Multimodal Neuroimaging Data'' | |||
: Front. Neuroinform., 11 April 2017 | |||
: doi: 10.3389/fninf.2017.00025 | |||
: https://doi.org/10.3389/fninf.2017.00025 | |||
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2016 | |||
</h3> | |||
; Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev | |||
: ''Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI'' | |||
: The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2. | |||
: http://jnm.snmjournals.org/content/57/supplement_2/237.abstract | |||
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2015 | |||
</h3> | |||
; Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK | |||
: ''Automatic segmentation of brain tumors using tensor analysis and multimodal MRI'' | |||
: XX Medical Informatics & Technologies Conference - 21-23 October 2015. Szcyrk, Poland. | |||
; Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto | |||
: ''Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis'' | |||
: Frontiers in Aging Neuroscience. JCR 2014 - 4.000 | |||
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto | |||
: ''Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder'' | |||
: Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print) | |||
; Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse | |||
: ''Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification'' | |||
: Neurocomputing (aceptado 6 de marzo) [6] | |||
; Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I | |||
: ''The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study'' | |||
: Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017 | |||
; Darya Chyzhyk, Alexandre Savio, Manuel Graña | |||
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM | |||
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080 | |||
; Alexandre Savio, Manuel Graña | |||
: ''Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI'' | |||
: Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015) | |||
; G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos | |||
: ''A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data'' | |||
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42 | |||
: http://dx.doi.org/10.1016/j.neucom.2014.02.076 | |||
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2014 | |||
</h3> | |||
; Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio | |||
: ''Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial'' | |||
: Neurogune 14, San Sebastián, Spain. | |||
; Alexandre Savio & Manuel Graña | |||
: ''Brain Cloud Computing: Brain image pre-processing made easy and boring'' | |||
: Neurogune 14, San Sebastián, Spain. | |||
; Alexandre Savio, Darya Chyzhyk, Manuel Graña | |||
: ''Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI'' | |||
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. | |||
: Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [http://link.springer.com/chapter/10.1007%2F978-3-319-07617-1_1] | |||
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, | |||
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf] | |||
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, | |||
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065. | |||
: JCR (2012) 1.634 (T1, Q2 CSAI) | |||
; Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró | |||
: ''Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study'' | |||
: Human Brain Mapping (aceptado 15 nov 2013) online [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract] | |||
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) | |||
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2013 | |||
</h3> | |||
: [[media:Alex-Savio-thesis final with covers.pdf | PhD Thesis]] - [[media:Alex_thesis_slides.pdf | Dissertation slides]] | |||
; Borja Ayerdi, Alexandre Savio, Manuel Graña | |||
: ''Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features'' | |||
: IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[http://link.springer.com/chapter/10.1007%2F978-3-642-38622-0_13] | |||
: J.M. Ferrandez et al. (Eds.): | |||
; Alexandre Savio, Manuel Graña | |||
: ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection'' | |||
: IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) [[media:Iwann13_oasis_aal_draft.pdf|draft]][http://link.springer.com/chapter/10.1007%2F978-3-642-38682-4_13] | |||
: I. Rojas, G. Joya, and J. Cabestany (Eds.) | |||
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2012 | |||
</h3> | |||
; Alexandre Savio, Manuel Graña | |||
: ''Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease'' | |||
: Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009][[Media:Alexsavio_eswa12_draft.pdf | draft]] JCR (2011) 2.203 (Q1 in CSAI) | |||
; Darya Chyzhyk, Alexandre Savio and Manuel Grana | |||
: ''Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI'' | |||
: ELM 2012 | |||
; Alexandre Savio, Manuel Graña | |||
: ''Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database'' | |||
: Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012. | |||
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. [[Media:Alexsavio_kes12_draft.pdf | draft]][http://dblp.uni-trier.de/db/conf/kes/kes2012.html#Savio12] | |||
; S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens | |||
: ''Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems'' | |||
: Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204 | |||
; A. Bourisly, A. Savio, M. Graña | |||
: ''A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease'' | |||
: OHBM 2012. June 10-14, 2012 Beijing, China | |||
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora | |||
: ''Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI'' | |||
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429 | |||
<h3> | |||
2011 | |||
</h3> | |||
; A. Savio, A. Bourisly, M. Graña | |||
: ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'' | |||
: ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany | |||
:*[[media:Alexsavio_manuel_ismrm_final.pdf | slides (PDF)]] | |||
:*[[media:Alexsavio_prezi_ismrm.zip | slides (Prezi flash)]] | |||
; M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga | |||
: ''Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.'' | |||
: Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055 | |||
; Alexandre Savio, Manuel Graña, Jorge Villanúa | |||
: ''Deformation based features for Alzheimer's disease detection with linear SVM.'' | |||
: [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011) | |||
:* [[media:ASavio-HAIS-2011.pdf |draft]] | |||
:* [[GIC-experimental-databases/OASIS_deformation_feature_vectors | Deformation features]] | |||
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2010 | |||
</h3> | |||
; Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa | |||
: ''Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI'' | |||
: Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269 | |||
:* [[media:Savio-cbm-2011_draft.pdf | draft]] [http://www.ncbi.nlm.nih.gov/pubmed/21621760] | |||
:<b>Data:</b> | |||
:[[GIC-experimental-databases/OASIS_VBM_feature_vectors]] | |||
:[[List of 98 OASIS females]] | |||
; Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña | |||
: ''Neural classifiers for schizophrenia diagnostic support on diffusion imaging data'' | |||
: Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html].. ISI JCR 2009: 0.475 | |||
:* [[media:slides_schizophrenia_dti_nnw.pdf | slides]] | |||
:* [[media:schizophrenia_dti_nnw.pdf | draft]] | |||
: Data: | |||
::* Post-processed subjects: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part01.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part02.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_subjects.part03.rar part 3] | |||
::* Correlation values: [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part1.rar part 1], [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part2.rar part 2] and [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_correlation_values.part3.rar part 3] | |||
::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_masks.tar.gz Feature masks] | |||
::* [http://www.ehu.es/ccwintco/files/nnw_szhizophrenia_data/nnw_schizophrenia_dti_feature_vectors.tar.gz Features vectors] | |||
::* Data extracted from the [http://insight-journal.org/midas/collection/view/190?path_navigation=17 NAMIC: Brain Multimodality] database. | |||
; Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain | |||
: ''Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI'' | |||
: Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers | |||
: Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), | |||
; Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández | |||
: ''A Lattice Computing approach for On-line fMRI analysis'' | |||
: Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525 | |||
; Darya Chyzhyk, Maite Termenón, Alexandre Savio | |||
: ''A Comparison of VBM Results by SPM, ICA and LICA'' | |||
: Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; [http://dx.doi.org/10.1007/978-3-642-13803-4_53 DOI 10.1007/978-3-642-13803-4_53] | |||
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; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa | ; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa | ||
: | : ''On the use of Morphometry based features for Alzheimer's Disease detection on MRI'' | ||
:Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I) | : Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; [http://portal.acm.org/citation.cfm?id=1573045 DOI 10.1007/978-3-642-02478-8_120] | ||
:*[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWANN2009.pdf | draft]] | |||
:<b>Data:</b> | :<b>Data:</b> | ||
:[[GIC-experimental-databases/OASIS_VBM_feature_vectors]] | |||
:[[List of 98 OASIS females]] | :[[List of 98 OASIS females]] | ||
; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa | ; Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa | ||
: | : ''Results of an Adaboost approach on Alzheimer's Disease detection on MRI'' | ||
:Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II) | : Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; [http://portal.acm.org/citation.cfm?id=1574369 DOI 10.1007/978-3-642-02267-8_13] | ||
:[[Media:GarciaSebastianSavio-VBM_SPM_SVM-IWINAC2009_v2.pdf | draft]] | |||
:<b>Data:</b> | :<b>Data:</b> | ||
:[[GIC-experimental-databases/OASIS_VBM_feature_vectors]] | |||
:[[List of 98 OASIS females]] | :[[List of 98 OASIS females]] | ||
; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa | ; Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa | ||
:Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection | : ''Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection'' | ||
:Intelligent Data Engineering and Automated Learning - IDEAL 2009 | : Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; [http://www.springerlink.com/content/8q670qm0g4377822/ DOI: 10.1007/978-3-642-04394-9_78] | ||
:[[Media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]] | |||
:<b>Data:</b> | :<b>Data:</b> | ||
:[[GIC-experimental-databases/OASIS_VBM_feature_vectors]] | |||
:[[List of 98 OASIS females]] | :[[List of 98 OASIS females]] | ||
<h3> | <h3> | ||
2008 | 2008 | ||
</h3> | </h3> | ||
; Maite García-Sebastián, A. M. Savio, M. Graña | ; Maite García-Sebastián, A. M. Savio, M. Graña | ||
:Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&arnumber=4631363&isnumber=4630767] | : ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm'' | ||
: [http://ieeexplore.ieee.org/xpls/abs_all.jsp?tp=&arnumber=4631363&isnumber=4630767 | link]; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0 | |||
; Alexandre Manhaes Savio | ; Alexandre Manhaes Savio | ||
: | : ''Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08'' | ||
:Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors) | : Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1 | ||
:[[Media:LibroPresentacionesVerona.pdf | slides_book]] | |||
:ISBN 978-84-296-2316-1 | |||
<br/> | <br/> | ||
== Projects == | == Projects == | ||
=== XXIV Premio Toribio Echeverria === | |||
* Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio "Ideas/Proyectos Empresariales" 2014 "Empresa Asmoak" Saria [[media:2014-05-29-Los Toribio premian proyectos de tecnología computacional. Noticias de Gipuzkoa.pdf|noticias de gipuzkoa]], [[Archivo:Con-el-premio-toribio-echeverria-20140-Brain-Cloud-Computing-team.jpg|100px|thumb|right|con el premio]], [[media:2014-05-28-noticia-SPRI.pdf|noticias SPRI]] | |||
=== Segundo Premio Laborde Werlinden XIII === | |||
* Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [http://entreprenari.com/html/cast/premios/mlaborde1.htm] [[media:Diario vasco premio laborde XIII.pdf | on the local news]] | |||
=== MICINN Imagenes Medicas === | |||
*Investigador Principal: Manuel Graña | |||
* Participantes: | |||
** UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos | |||
** Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua, | |||
** Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012) | |||
** Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola | |||
** Ikerbasque: Amaury Lendasse | |||
** Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner | |||
* duración: 2011-2013 | |||
* Type of participation: member of the research group | |||
=== [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] === | === [http://www.ehu.es/ccwintco/index.php/Proyectos#Proyecto_Saiotek_2009-2010 SAIOTEK 2009] === | ||
* Investigador Principal: Manuel Graña | |||
* Acronimo SOFLIMRI | |||
*Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas | |||
*Importe de la subvención: 32000 euros | |||
*Duracion: 2009-2010 | |||
* [[media:Memoria-adicional-SOFLIMRI.pdf|memoria adicional final]] | |||
* Type of participation: member of the research group | |||
* Otros proyectos del grupo [http://www.ehu.es/ccwintco/index.php/Proyectos] | |||
* | |||
<br/> | <br/> | ||
Línea 129: | Línea 392: | ||
== Research Questions == | == Research Questions == | ||
* | * How does the multivariate tensor analysis work using all the deformation tensor information? | ||
* | * Is there any SOM-based framework for diffusion data modelling? | ||
* Any application of Lattice-Computing on Probabilistic Tractography? | |||
<br/> | <br/> | ||
Línea 142: | Línea 406: | ||
* Multivariate Analysis | * Multivariate Analysis | ||
* [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate] | * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate] | ||
* DTI modeling | |||
* Process Ann's DTI dataset | |||
* Add MRI and ML related info pages with literature reviews on this wiki. | |||
<br/> | <br/> | ||
=== articulos de revistas en proceso de redacción === | |||
* rsfMRI scalar measures and CAD | |||
* rsfMRI connectivity matrices and CAD | |||
=== conferencias en el horno === | |||
== Conferences == | == Conferences == | ||
Línea 152: | Línea 426: | ||
'''Coming...''' | '''Coming...''' | ||
<br/> | <br/> | ||
== Current readings == | == Current readings == | ||
Línea 220: | Línea 457: | ||
<h3>Working articles</h3> | <h3>Working articles</h3> | ||
* | * More information in my groupware articles [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&art_id=172 Artículos Image Registration] and [http://www.ehu.es/ccwintco/groupware/index.php?menuaction=phpbrain.uikb.view_article&art_id=328 Working Diaries] | ||
<br/> | <br/> | ||
Línea 246: | Línea 469: | ||
2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis] | 2- [http://www.elsevier.com/wps/find/journaldescription.cws_home/620983/description Medical Image Analysis] | ||
3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions | 3- [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=42 IEEE Transactions on Medical Imaging] | ||
4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine] | 4- [http://www3.interscience.wiley.com/journal/10005196/home Magnetic Resonance in Medicine] | ||
=== Otras revistas === | === Otras revistas === | ||
* [http://journals.elsevier.com/10538119/neuroimage/ Neuroimage] | |||
* [http://www.cars-int.org Computer Assisted Radiology and Surgery] | * [http://www.cars-int.org Computer Assisted Radiology and Surgery] | ||
* [http://www.springer.com/biomed/neuroscience/journal/12021 Neuroinformatics] | |||
* [http://insight-journal.org Insight Journal] | * [http://insight-journal.org Insight Journal] | ||
Línea 259: | Línea 486: | ||
* [http://www.biij.org Biomedical Imaging and Intervention Journal] | * [http://www.biij.org Biomedical Imaging and Intervention Journal] | ||
* [http://brain.oxfordjournals.org/ Brain] | * [http://brain.oxfordjournals.org/ Brain] | ||
Línea 269: | Línea 494: | ||
* [http://scitation.aip.org/EL Electronics Letters] | * [http://scitation.aip.org/EL Electronics Letters] | ||
* [http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?reload=true&punumber=10 IEEE Transactions on Biomedical Engineering] | |||
* [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291522-2586 Journal of MRI] | |||
* [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine] | * [http://www.elsevier.com/wps/find/journaldescription.cws_home/505627/description#description Artificial Intelligence in Medicine] | ||
* [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems] | * [http://www.tandf.co.uk/journals/tf/01969722.html Cybernetics and Systems] | ||
* [http://www.elsevier.com/wps/find/journaldescription.cws_home/506081/description Neuroscience Letters] | |||
=== Congresos === | === Congresos === | ||
Línea 279: | Línea 510: | ||
* [http://www.biostec.org BIOSTEC] | * [http://www.biostec.org BIOSTEC] | ||
* [http://www.ismrm.org/meetings-workshops/future-ismrm-meetings/ ISMRM] | |||
* [http://spie.org/medical-imaging.xml SPIE Medical Imaging] | * [http://spie.org/medical-imaging.xml SPIE Medical Imaging] | ||
Línea 289: | Línea 522: | ||
* [http://www.wbir2010.org WBIR] WBIR 2010 | * [http://www.wbir2010.org WBIR] WBIR 2010 | ||
* [http://www.biomedicalimaging.org/ International Symposium on Biomedical Imaging] | |||
* More conferences: [http://www.isi.uu.nl/Conferences/] | * More conferences: [http://www.isi.uu.nl/Conferences/] | ||
Línea 321: | Línea 556: | ||
* [http://www.oasis-brains.org OASIS] | * [http://www.oasis-brains.org OASIS] | ||
* [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project] | |||
* [http://adni.loni.ucla.edu/ ADNI] | |||
* [http://www.nitrc.org/projects/brainmap BrainMap] | * [http://www.nitrc.org/projects/brainmap BrainMap] | ||
* [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database] | * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database] | ||
* [http://insight-journal.org/midas MIDAS] | |||
* [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE] | |||
* [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia] | |||
=== Research Groups === | === Research Groups === | ||
* [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England | |||
* [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building | * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building | ||
Línea 333: | Línea 580: | ||
* [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania | * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania | ||
* [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung] | |||
* [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón | |||
* [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University | |||
* [http://www.na-mic.org/ National Alliance for Medical Image Computing] | |||
* [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis | |||
* [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis | |||
* [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich | |||
* [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam | |||
* [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology | * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology | ||
Línea 343: | Línea 606: | ||
== Utilities == | == Utilities == | ||
=== Scientific Writing === | |||
* [[Media:How_to_write_a_good_introduction.pdf | Chapter "How to Write an Introduction" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] ) | |||
* [[Media:Writing_about_methodology.pdf | Chapter "Writing about methodology" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] | |||
* [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]] | |||
=== Computer Settings === | === Computer Settings === | ||
Línea 364: | Línea 635: | ||
* [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]] | * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]] | ||
* [http:// | * [http://neuro.debian.net/ Página de instalación de FSL en Debian] | ||
* [[Setting up FSL to use a SunGridEngine or computing cluster]] | * [[Setting up FSL to use a SunGridEngine or computing cluster]] | ||
* [[How to install Springer LNCS Style for Lyx]] | * [[How to install Springer LNCS Style for Lyx]] | ||
* [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV] | |||
* [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]] | |||
* [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]] | |||
* [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]] | |||
=== Image Processing === | === Image Processing === | ||
Línea 411: | Línea 690: | ||
* [http://www.fmrimethods.org/index.php/Main_Page fMRI methods] | * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods] | ||
* [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations] | |||
* [[media:fdt.pdf | FMRIB Diffusion Toolbox]] | |||
=== Pattern Recognition === | === Pattern Recognition === | ||
Línea 421: | Línea 704: | ||
* [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines] | * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines] | ||
* [http://www.support-vector-machines.org/SVM_soft.html Spider SVM] | |||
* [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)] | * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)] | ||
Línea 427: | Línea 712: | ||
* [[Presentaciones-informes-software-veganzones | Some interesting presentations]] | * [[Presentaciones-informes-software-veganzones | Some interesting presentations]] | ||
* [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration) | |||
=== Real World === | === Real World === | ||
Línea 432: | Línea 719: | ||
* [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]] | * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]] | ||
* [http://www.youtube.com/watch?v= | * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!] | ||
* [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] ) | * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] ) | ||
Línea 456: | Línea 743: | ||
; Trabajo de investigación aprobado. | ; Trabajo de investigación aprobado. | ||
; [[Media:Contratos_PIC_2008-2009.pdf Contratos durante los años 2008 y 2009]] | ; [[Media:Contratos_PIC_2008-2009.pdf | Contratos durante los años 2008 y 2009]] | ||
; Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas). |
Revisión actual - 13:37 4 feb 2019
- My PGP key: alexsavio_pgp.key
Surveys (wiki under construction)
Alexandre Manhães Savio
Studies
- PhD Thesis: Experiments of Machine Learning for Neurodiagnosis. Director: Prof. Manuel Graña Romay. 08/Nov/2013
- January/2010 - November/2013 - PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.
- Information Engineer (October 2006) - University of the Basque Country
Work Experience
- November/2018 - present - Cloud Applications Developer in Nordcloud Deutschland GmbH, München.
- November/2017 - present - Part-time post-doctoral researcher in the Nuclear Medicine Department of the Klinikum rechts der Isar - Technische Universität München.
- November/2017 - October/2018 - Engineer in Siemens AG, München.
- April/2017 - October/2017 - IT Architect for MaibornWolff Gmbh, München.
- October/2015 - March/2017 - Post-doctoral research in the Nuclear Medicine Department of the Klinikum rechts der Isar - Technische Universität München, Ismaninger Str. 22, 81675 Munich, Germany,
- multi-modal brain PET-MRI processing and classification for detection of dementiae, collaboration with the Wrocław University of Technology. Board member of the EuroPython Society and organizer of EuroPython 2016.
- January/2015 - October/2015 - Post-doctoral researcher for the European ENGINE Project at the Wrocław University of Technology, Poland.
- collaborations with the local research group, Spanish clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.
- December/2013 - December/2014 - Post-doctoral researcher at the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country
- collaborations with clinical staff for medical image processing projects, brain fMRI image processing, Python programmer and EuroPython 2015 organizer.
- January/2010 - November/2013 - PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country. 4 years pre-doctoral grant from the Basque Government.
- Brain MR image processing and application of classification algorithms for the detection of brain neuronal disorders. Testing of new multishell brain HARDI models.
- February/2008 - December/2009 - Research assistant at the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country
- MR image processing and application of classification algorithms for the detection of brain neuronal disorders.
- April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.
- Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB
- July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.
- C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration
Courses
- July 7th-11th, 2008 - AERFAI Summer School - PRMA'08 - Pattern Recognition for Motion Analysis in the Computer Vision Center of the Universidad Autónoma de Barcelona.
- July 1st-12th, 2009 - Athinoula A. Martinos Center for Biomedical Imaging, Boston, MA - Two-Week Multi-Modality Short Course
- May 31st - June 4th, 2010 - FSL Course organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg & Würzburg Universities in Heidelberg, Germany.
Internships
- January 24th - July 31st, 2011 - FMRIB, University of Oxford, UK with Dr. Saad Jbabdi. On ball&stick diffusion models for multishell HARDI and model selection.
Software
- Pypes: a Python module based on Nipype for multimodal neuro-image pre-processing.
- Aizkolari tools: a ZIP file with the repository on Sept 20th, 2013. click here
- Interlines (my blog)
- 19-10-12 Tutorial sobre Python y scikit-learn
- Copies of some software in my GitHub account:
Publications
Post-processed datasets from the work done in the group.
2017
- Alexandre Savio, Sarah Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince Calhoun, Alexander Drzezga, Valentin Riedl and Igor Yakushev
- Resting state networks as simultaneously measured with fMRI and PET
- The Journal of Nuclear Medicine, First published March 2, 2017,
- doi: 10.2967/jnumed.116.185835
- http://jnm.snmjournals.org/content/early/2017/02/23/jnumed.116.185835.abstract
- Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev
- Pypes: Workflows for Processing Multimodal Neuroimaging Data
- Front. Neuroinform., 11 April 2017
- doi: 10.3389/fninf.2017.00025
- https://doi.org/10.3389/fninf.2017.00025
2016
- Thomas Stadhouders, Alexandre Savio, Janine Diehl-Schmid, Christian Sorg, Timo Grimmer and Igor Yakushev
- Alterations in neurocognitive networks in dementing disorders as assessed with simultaneous PET/fMRI
- The Journal of Nuclear Medicine, May 2016, vol. 57, supplement 2.
- http://jnm.snmjournals.org/content/57/supplement_2/237.abstract
2015
- Konrad JACKOWSKI, Alexandre MANHAES-SAVIO, Boguslaw CYGANEK
- Automatic segmentation of brain tumors using tensor analysis and multimodal MRI
- XX Medical Informatics & Technologies Conference - 21-23 October 2015. Szcyrk, Poland.
- Ariadna Besga, Itxaso González-Ortega, Enrique Echeburúa, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose LM Madrigal, Juan C. Leza, Manuel Graña, Ana González-Pinto
- Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis
- Frontiers in Aging Neuroscience. JCR 2014 - 4.000
- Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto
- Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder
- Current Alzheimer Research, Volume 13, Number 5, 2016. PAges 557-565. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)
- Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse
- Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification
- Neurocomputing (aceptado 6 de marzo) [6]
- Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I
- The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study
- Contemporary Clinical Trials, Article accepted for publication: 21 Sep 2015, DOI: 10.1016/j.cct.2015.09.017
- Darya Chyzhyk, Alexandre Savio, Manuel Graña
- Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM
- Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080
- Alexandre Savio, Manuel Graña
- Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI
- Neurocomputing (Q1 CSAI: 2.005) (accepted Jan 10th, 2015)
- G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos
- A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data
- Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 37–42
- http://dx.doi.org/10.1016/j.neucom.2014.02.076
2014
- Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega, Alexandre Savio
- Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial
- Neurogune 14, San Sebastián, Spain.
- Alexandre Savio & Manuel Graña
- Brain Cloud Computing: Brain image pre-processing made easy and boring
- Neurogune 14, San Sebastián, Spain.
- Alexandre Savio, Darya Chyzhyk, Manuel Graña
- Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI
- 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014.
- Proceedings, pp 1-12. DOI: 10.1007/978-3-319-07617-1_1; Print ISBN: 978-3-319-07616-4 [1]
- Darya Chyzhyk, Alexandre Savio, Manuel Graña,
- Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI pdf
- Neurocomputing, Volume 128, 27 March 2014, Pages 73-80,
- ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.
- JCR (2012) 1.634 (T1, Q2 CSAI)
- Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró
- Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study
- Human Brain Mapping (aceptado 15 nov 2013) online [2]
- Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences)
2013
- Borja Ayerdi, Alexandre Savio, Manuel Graña
- Meta-ensembles of classifiers for Alzheimer's disease detection using independent ROI features
- IWINAC 2013, Part II, LNCS 7931, pp. 122-130. Springer, Heidelberg (2013)[3]
- J.M. Ferrandez et al. (Eds.):
- Alexandre Savio, Manuel Graña
- An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection
- IWANN 2013, Part II, LNCS 7903, pp. 107-114. Springer, Heidelberg (2013) draft[4]
- I. Rojas, G. Joya, and J. Cabestany (Eds.)
2012
- Alexandre Savio, Manuel Graña
- Deformation based feature selection for Computer Aided Diagnosis of Alzheimer’s Disease
- Expert Systems with Applications, Available online 20 September 2012, Volume 40, Issue 5, April 2013, Pages 1619–1628 [5] draft JCR (2011) 2.203 (Q1 in CSAI)
- Darya Chyzhyk, Alexandre Savio and Manuel Grana
- Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI
- ELM 2012
- Alexandre Savio, Manuel Graña
- Supervised classification using deformation-based features for Alzheimer's disease detection on the OASIS cross-sectional database
- Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012.
- Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. draft[6]
- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens
- Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems
- Magnetic Resonance in Medicine, Volume 68, Issue 6, pages 1846–1855, December 2012, DOI: 10.1002/mrm.24204 - doi: 10.1002/mrm.24204
- A. Bourisly, A. Savio, M. Graña
- A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease
- OHBM 2012. June 10-14, 2012 Beijing, China
- Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora
- Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI
- Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77; ISSN 0925-2312; ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429
2011
- A. Savio, A. Bourisly, M. Graña
- On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques
- ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany
- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga
- Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation.
- Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055
- Alexandre Savio, Manuel Graña, Jorge Villanúa
- Deformation based features for Alzheimer's disease detection with linear SVM.
- Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)
2010
- Alexandre Savio, Maite García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa
- Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI
- Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269
- Data:
- GIC-experimental-databases/OASIS_VBM_feature_vectors
- List of 98 OASIS females
- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña
- Neural classifiers for schizophrenia diagnostic support on diffusion imaging data
- Neural Network World 20(7):935-949 [8].. ISI JCR 2009: 0.475
- Data:
- Post-processed subjects: part 1, part 2 and part 3
- Correlation values: part 1, part 2 and part 3
- Feature masks
- Features vectors
- Data extracted from the NAMIC: Brain Multimodality database.
- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain
- Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI
- Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers
- Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds),
- Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández
- A Lattice Computing approach for On-line fMRI analysis
- Image and Vision Computing 28(7):1155-1161, July 2010,; http://dx.doi.org/10.1016/j.imavis.2009.10.004; ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525
- Darya Chyzhyk, Maite Termenón, Alexandre Savio
- A Comparison of VBM Results by SPM, ICA and LICA
- Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; DOI 10.1007/978-3-642-13803-4_53
2009
- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa
- On the use of Morphometry based features for Alzheimer's Disease detection on MRI
- Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; DOI 10.1007/978-3-642-02478-8_120
- Data:
- GIC-experimental-databases/OASIS_VBM_feature_vectors
- List of 98 OASIS females
- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa
- Results of an Adaboost approach on Alzheimer's Disease detection on MRI
- Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; DOI 10.1007/978-3-642-02267-8_13
- draft
- Data:
- GIC-experimental-databases/OASIS_VBM_feature_vectors
- List of 98 OASIS females
- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa
- Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection
- Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; DOI: 10.1007/978-3-642-04394-9_78
- draft
- Data:
- GIC-experimental-databases/OASIS_VBM_feature_vectors
- List of 98 OASIS females
2008
- Maite García-Sebastián, A. M. Savio, M. Graña
- Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm
- | link; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0
- Alexandre Manhaes Savio
- Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08
- Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1
- slides_book
Projects
XXIV Premio Toribio Echeverria
* Alexandre Savio y Borja Ayerdi y Manuel Graña: XXIV Premio Toribio Echeverria, Brain Cloud Computing, Premio "Ideas/Proyectos Empresariales" 2014 "Empresa Asmoak" Saria noticias de gipuzkoa,
Segundo Premio Laborde Werlinden XIII
- Alexandre Savio, Borja Ayerdi y Manuel Graña: XIII Premio Manuel Laborde Werlinden, 2013 [9] on the local news
MICINN Imagenes Medicas
- Investigador Principal: Manuel Graña
- Participantes:
- UPV/EHU: Darya Chyzhyk, Blanca Rosa Cases Gutierrez, Alexandre Manhaes Savio, Josu Maiora Oria, Carmen Hernandez Gomez, Pablo Gonzalez Nalda, Borja Fernandez Gauna, Aitzol Ezeiza Ramos
- Oastek: Esther Fernandez Pardavila, Jorge Alberto Villanua Bernues, Jon Echeveste Aizpurua,
- Hospital Santiago: Ariadna Besga Basterra (baja en junio 2012)
- Vicomtech: Ivan Macia Oliver, Iñigo Barandiaran Martirena, Andoni Beristain Iraola
- Ikerbasque: Amaury Lendasse
- Colaboradores Extranjeros: Dost Ongur, Ann K. Shinn, Vassilis G Kaburlasos, Ajith Abraham, Timothy E Behrens, Saad Jbabdi, Peter Sussner
- duración: 2011-2013
- Type of participation: member of the research group
SAIOTEK 2009
- Investigador Principal: Manuel Graña
- Acronimo SOFLIMRI
- Titulo: Desarrollo basado en software libre de técnicas morfométricas de anatomía computacional para estudio de enfermedades neurodegenerativas
- Importe de la subvención: 32000 euros
- Duracion: 2009-2010
- memoria adicional final
- Type of participation: member of the research group
- Otros proyectos del grupo [10]
Research Areas
- Pattern recognition applied to medical images
- Brain medical image processing
- Gesture recognition systems
Research Questions
- How does the multivariate tensor analysis work using all the deformation tensor information?
- Is there any SOM-based framework for diffusion data modelling?
- Any application of Lattice-Computing on Probabilistic Tractography?
Pending Tasks
- ITK, ANTS...
- OpenMP and MPI
- Multivariate Analysis
- Meditate
- DTI modeling
- Process Ann's DTI dataset
- Add MRI and ML related info pages with literature reviews on this wiki.
articulos de revistas en proceso de redacción
- rsfMRI scalar measures and CAD
- rsfMRI connectivity matrices and CAD
conferencias en el horno
Conferences
"I love deadlines. I especially like the whooshing sound they make as they go flying by." - Douglas Adams
Coming...
Current readings
Books
- Human Brain Function 2nd edition - J Ashburner, K Friston and W Penny PDF completo
- Medical Image Registration - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)
@book{mcconnell_applications_1960, title = {Applications of Tensor Analysis}, isbn = {0486603733}, publisher = {Dover Publications}, author = {A. J. {McConnell}}, month = jun, year = {1960} }
Working articles
- More information in my groupware articles Artículos Image Registration and Working Diaries
Congresos y revistas objetivo
Revistas (ordenadas por factor de impacto)
1- Journal of Magnetic Resonance Imaging
3- IEEE Transactions on Medical Imaging
4- Magnetic Resonance in Medicine
Otras revistas
Congresos
- WBIR WBIR 2010
- More conferences: [12]
Internet Bookmarks
Courses
Databases
Research Groups
- Oxford Centre for Functional MRI of the Brain - University of Oxford - JR Hospital - England
- Centre of Medical Image Computing - University College London - Gower Street - Eng. Building
- Structural Brain Mapping Group - University of Jena - Thüringen - central Germany
- Section of Biomedical Image Analysis - University of Pennsylvania
- Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental - Hospital General Universitario Gregorio Marañón
- McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI) - McGill University
- Asclepios project - INRIA Sophia-Antipolis
- ODYSSEE research project-team - INRIA Sophia-Antipolis
- Divisions of Bioimaging and MRI Technology - University and ETH Zurich
- Biomedical Imaging Group Rotterdam - Erasmus MC - University Medical Center Rotterdam
- A community portal for MIT brain research - Massachussets Institute of Technology
- Image Processing Lab de la FEI Sao Bernardo do Campo (SP) - Brasil
Utilities
Scientific Writing
- Chapter "How to Write an Introduction" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English ( Ref. )
Computer Settings
- Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL) Giclus10.04 Installation Procedure (PDF File)
Image Processing
- Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)
Pattern Recognition
- Invited speakers for SIAM Conference on Optimization (Modersitzki presentation on image registration)
Real World
- Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos. ( Página personal de Luis Ibañez en Kitware )
- Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009
Estado burocrático de la tesis
- Director
- Manuel Graña
- Trabajo de investigación aprobado.
- Beca de Formación de Personal Investigador del Gobierno Vasco para los años 2010, 2011, 2012 y 2013 (todas las renovaciones ya han sido concedidas).