Usuario:Daria.chizhik

Darya Chyzhyk

Personal data

PhD Student

Thesis title: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral

Thesis advisor: Manuel Graña

Contact data

• E-mail: darya.chyzhyk@ehu.es
• Phone number: 0034 943 01 8047
• Address:
  • Darya Chyzhyk
  • Computational Intelligence Group
  • Computer Science Faculty - Lab. 307
  • University Of The Basque Country (UPV/EHU)
  • Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain

Reseach Areas

Medical Image Analysis, Machine learning and Image Processing.

Publicaciones

Publicaciones internas

• Trabajo sobre reconocimiento visual del alfabeto dactilológico

• Feature extraction from structural MRI images based on VBM: data from OASIS database

2012

Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña

A Novel Lattice Associative Memory Based on Dendritic Computing" draft

Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. Slides

Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209

ISBN: 978-3-642-28930-9

2011

Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora

Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. PDF

Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77

doi:10.1016/j.neucom.2011.02.024

ISSN 0925-2312

ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440

Darya Chyzhyk, Ann K. Shinn, and Manuel Graña

Exploration of LICA Detections in Resting State fMRI. draft

4th. International work-Conference on the Interplay between Natural and Artificial Computation (IWINAC 2011), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.

Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111,

ISBN: 978-3-642-21325-0

Darya Chyzhyk, Manuel Graña

Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. draft. slides.

Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.

Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57

Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak

Publisher: Springer Berlin / Heidelberg

ISBN: 978-3-642-19643-0

2010

Darya Chyzhyk, Maite Termenon, and Alexandre Savio

A Comparison of VBM results by SPM, ICA and LICA.

Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2

ISBN 978-3-642-13802-7

Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández

Lattice Independent Component Analysis for functional Magnetic Resonance Imaging DRAFT

Information Sciences 181, issue 10, 2011, pp. 1910-1928

Impact factor JCR (2008): 3.095 (2009) 3.291

DOI

Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua

Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI

Computers in Biology and Medicine 41 (2011), pp. 600-610 DOI

ISI Impact JCR (2009) 1.269 (2010) 1.112

Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain

Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI

in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101

2010 Bentham Science Publishers

2009

Darya Chyzhyk

Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry).

III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0

Activities

Reviews

• Journal of Mathematical Imaging and Vision
• HAIS 2010
• An International Journal on Multi-Sensor, Multi-Source Information Fusion

Organizer

• Local organizing committee member of the 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.
• Programme committee member of the Third International Conference on Computational Aspects of Social Networks (CASoN 2011), October 19-21, 2011 in Salamanca, Spain.
• Programme committee member of the Seventh International Conference on Next Generation Web Services Practices (NWeSP 2011), October 19-21, 2011 in Salamanca, Spain.
• Programme committee member of the Third World Congress on Nature and Biologically Inspired Computing (NaBIC 2011), October 19-21, 2011 in Salamanca, Spain.
• Programme committee member of the 7th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2012 (HAIS 2012), March 28-30, 2012 in Salamanca, Spain.

Internship

• University of Florida.

Department of Computer &Information Science & Engineering

Responsable investigator: Professor Gerhard X. Ritter

September 15th – December 15th, 2011

Research projects participation

• Project Title: Computational Intelligence techniques for brain imaging and the

neurosciences

• • Organism: University of Basque Country
  • Reference: MICINN Project, TIN2011-23823
  • Principal Investigator: Prof. Manuel Graña Romay
  • Date: 2011 – 2013.

Courses

• FSL & FreeSurfer Course 2010

Heidelberg, Germany

31 May - 4 June 2010

• Course on Statistical Parametric Mapping (SPM)

Zurich, Switzerland

16-18 February 2011

• International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)

European Centre of Soft Computing, Mieres, Spain

4-8 July 2011

Semana de la ciencia

• IX Semana de la Ciencia 2009
• X Semana de la Ciencia 2010

Congress of interest

• HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.

http://hais.usal.es/

• ISBI 2012, 2-5 May, Barcelona, Spain.

http://www.biomedicalimaging.org/index.php/authors/call-for-papers

• ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !

http://www.esann.org/

• Neuroinformatics 2012, Munich, Germany, September 10-12

http://www.neuroinformatics2012.org/ deadline February - April, 2012

• MICCAI 2012, Nice - October 1-5, 2012

http://www.miccai.org/

• | M-BIC Workshop Series, rsfMRI

Images

• fMRI
• sMRI
• Resting-state fMRI
  • REST
  • MELODIC

Data base

• Alzheimer's disease, OASIS
• Schizophrenia
• Cocainomania

2012 Neuroimage Sample

Soft

• SPM
• FSL
  • MELODIC
  • FreeSurfer
• REST, DPARSF
• Brain Connectivity Toolbox
• GIFT - ICA toolbox
• AFNI
• Anatomy of the brain de prepago :(

Grants

• Beca FPU

Estado burocrático de la tesis

Director - Manuel Graña Romay

beca concedida desde agosto 2009

tareas pendientes

1 -Reformato de imagenes[1], funcionales, fMRI

• coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.

• usar MRIcron[2] para pasar de formato DICOM a NIfTI (imagen final 4D)

• ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)

• Comprobar que se puede trabajar con el SPM5[3] y las imágenes NIfTI que hemos generado.

2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.

• Funciones a utilizar (dicominfo y dicomread)

• | DARTEL
• | Embajada E.E.U.U