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QIIME

 1. General information

 2.  How to use

 3. USEARCH

 4. More information

1. General information

QIIME (Quantitative Insights Into Microbial Ecology) is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data. QIIME is designed to take users from raw sequencing data generated on the Illumina or other platforms through publication quality graphics and statistics. This includes demultiplexing and quality filtering, OTU picking, taxonomic assignment, and phylogenetic reconstruction, and diversity analyses and visualizations. QIIME has been applied to studies based on billions of sequences from tens of thousands of samples

2.  How to use

To send QIIME jobs run the command

send_qiime

and answer the questions.

3. USEARCH

QIIME can use the USEARCH pakage.

4. More information

QIIME home page.

USEARCH.

 

 

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