Computational and Experimental Evaluation of the Immune Response of Neoantigens for Personalized Vaccine Design (2023) Iker Malaina; Lorena Gonzalez Melero; Luis Martinez; Aiala Salvador; Ana Sanchez-Diez; Aintzane Asumendi; Javier Margareto; Jose Carrasco-Pujante; Leire Legarreta; Maria Asuncion Garcia … S Alonso, Rosa M Hernandez, MD Boyano International Journal of Molecular Sciences 24(10), 9024

Melanoma Clinical Decision Support System: An Artificial Intelligence-Based Tool to Diagnose and Predict Disease Outcome in Early-Stage Melanoma (2023) Jose Luis Diaz-Ramon; Jesus Gardeazabal; Rosa Izu Belloso; Estibaliz Garrote; Javier Rasero; Aintzane Apraiz; Cristina Penas Lago; Sandra Seijo; Cristina L. Saratxaga; Pedro Maria De la Pna … S Alonso, Aintzane Asumendi, MD Boyano Cancers 15(7), 2174

A Universal Antigen-Ranking Method to Design Personalized Vaccines Targeting Neoantigens against Melanoma (2023) Iker Malaina; Luis Martinez; Juan Manuel Montoya; Santos Alonso; Maria Dolores Boyano; Aintzane Asumendi; Rosa Izu; Ana Sanchez-Diez; Goikoane Cancho-Galan; Ildefonso M. de la Fuente Life 13()1 155

Benchmarking of human Y-chromosomal haplogroup classifiers with whole-genome and whole-exome sequence data (2022) Victor Garcia-Olivares; Adrian Munoz-Barrera; Luis A. Rubio-Rodriguez; David Jaspez; Ana Diaz-de Usera; Antonio Inigo Campos; Krishna R. Veeramah; Santos Alonso; Mark G. Thomas; Jose M. Lorenzo-Salazar et al. Comput Struct Biotechnol J 15:21:4613-4618

Association of TYR SNP rs1042602 with Melanoma Risk and Prognosis (2022) Arrate Sevilla Mambrilla; Ana Sanchez-Diez; Sofia Cobo Sustacha; Neskuts Izagirre Arribalzaga; Conrado Martinez-Cadenas; Marti RM; Teresa Puertolas; Blanca de Unamuno; Jose Banuls; Rosa Izu et al. [S Alonso last] Life 12(12) 2004

Complete mitogenome in a population sample from Cameroon (2020) Sonia Olaechea-Lazaro, Oscar Garcia, Rafaela Gonzalez-Montelongo, Jose Miguel Lorenzo-Salazar, Carlos Flores, Saioa Lopez, Krishna R. Veeramah, Garrett Hellenthal, Mark, G. Thomas, Santos Alonso Forensic Science International: Genetics 55-102597

shinyCurves, a shiny web application to analyse multisource qPCR amplification data: a COVID 19 case study (2021) S. Olaechea-Lazaro, I. Garcia-Santisteban, JR. Pineda, I. Badiola, S. Alonso, JR. Bilbao, N. Fernandez-Jimenez BMC Bioinformatics 22:476 doi: https://doi.org/10.1186/s12859-021-04392-1

Fast SARS-CoV-2 detection protocol based on RNA precipitation and RT-qPCR in nasopharyngeal swab samples (2020) Xabier Guruceaga, Amanda Sierra, Daniel Marino, Izortze Santin, Jon Ander Nieto-Garai, Jose Ramon Bilbao, Maier Lorizate, Patricia Aspichueta, coBIG (COVID19 Basque Inter-institutional Group), Ugo Mayor medRxiv doi: https://doi.org/10.1101/2020.04.26.20081307

RKIP Regulates Differentiation-Related Features in Melanocytic Cells (2020) Cristina Penas, Aintzane Apraiz, Iraia Munoa, Yoana Arroyo-Berdugo, Javier Rasero, Pilar A Ezkurra, Veronica Velasco, Nerea Subiran, Anja K Bosserhoff, Santos Alonso, Aintzane Asumendi, Maria D Boyano Cancers (Basel)12:1451

BRAF V600E mutational load as a prognosis biomarker in malignant melanoma (2020) Sevilla A, Morales MC, Ezkurra PA, Rasero J, Velasco V, Cancho-Galan G, Sanchez-Diez A, Mujika K, Penas C, Smith I, Asumendi A, Cortes JM, Boyano MD, Alonso S. PLoS ONE 15:e0230136

Genomic analyses of human European diversity at the southwestern edge: isolation, African influence and disease associations in the Canary Islands (2018) Beatriz Guillen-Guio, Jose M Lorenzo-Salazar, Rafaela Gonzalez-Montelongo, Ana Diaz-de Usera, Itahisa Marcelino-Rodriguez, Almudena Corrales, Antonio Cabrera de Leon, Santos Alonso, Carlos Flores Mol Biol Evol 35:3010-3026

Identification of a novel locus associated with skin colour in African-admixed populations (2017) Natalia Hernandez-Pacheco, Carlos Flores, Santos Alonso, Celeste Eng, Angel C. Y. Mak, Scott Hunstman, Donglei Hu, Marquitta J. White, Sam S. Oh, Kelley Meade, Harold J. Farber, Pedro C. Avila, Denise Serebrisky, Shannon M. Thyne, Emerita Brigino-Buenaventura, William Rodriguez-Cintron, Saunak Sen, Rajesh Kumar, Michael Lenoir, Jose R. Rodriguez-Santana, Esteban G. Burchard & Maria Pino-Yanes. Sci Reports. 7:445487

Sex-specific genetic effects associated with pigmentation, sensitivity to sunlight, and melanoma in a population of Spanish origin (2016) Hernando B, Ibarrola-Villava M, Fernandez LP, Peña-Chilet M, Llorca-Cardeñosa M, Oltra SS, Alonso S, Boyano MD, Martinez-Cadenas C, Ribas G. Biol Sex Differ. 18;7:17

The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa (2016) M. Hervella, E. M. Svensson, A. Alberdi, T. Günther, N. Izagirre, A. R. Munters, S. Alonso, M. Ioana, F. Ridiche, A. Soficaru, M. Jakobsson, M. G. Netea, C. de-la-Rua. Sci Reports 6, Article number: 25501

Melanocytes from dark and light skin respond differently after ultraviolet B irradiation: effect of kerartinocyte –conditioned medium (2015) López S, Alonso S, García de Galdeano A, Smith-Zubiaga I. Photodermatology, Photoimmunology & Photomedicine 31:149-158

Comparison of transcriptional profiles of melanocytes from dark and light skinned individuals under basal conditions and following ultraviolet-B radiation (2015) Saioa López, Isabel Smith-Zubiaga, Alicia García de Galdeano, María Dolores Boyano, Oscar García, Jesús Gardeazábal, Conrado Martinez-Cadenas, Neskuts Izagirre, Concepción de la Rúa, Santos Alonso PLoS ONE 10(8):e0134911

Evaluation of European coeliac disease risk variants in a North Indian population (2015) Sabyasachi Senapati, Javier Gutierrez-Achury, Ajit Sood, Vandana Midha, Agata Szperl, Jihane Romanos, Alexandra Zhernakova, Lude Franke, Santos Alonso, B.K Thelma, Cisca Wijmenga and Gosia Trynka. European Journal of Human Genetics 23, 530–53 82

The interplay between natural selection and suceptibility to melanoma on allele 374F of SLC45A2 gene in a South European Population (2014) Lopez S, García O, Yurrebaso I, Flores C, Marialbert Acosta-Herrera, Hua Chen, Jesús Gardeazabal, Jesús María Careaga, María Dolores Boyano, Ana Sánchez, Juan Antonio Ratón-Nieto, Arrate Sevilla, Isabel Smith-Zubiaga, Alicia García de Galdeano, Conrado Martinez-Cadenas, Neskuts Izagirre, Concepción de la Rúa, Santos Alonso. PLoS ONE 9(8): e10436

Convergent evolution in European and Rroma populations reveals pressure exerted by plague on Toll-like receptors (2014) Laayouni H1, Oosting M, Luisi P, Ioana M, Alonso S, Ricaño-Ponce I, Trynka G, Zhernakova A, Plantinga TS, Cheng SC, van der Meer JW, Popp R, Sood A, Thelma BK, Wijmenga C, Joosten LA, Bertranpetit J, Netea MG. Proc Natl Acad Sci USA 111:2668-73

Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny (2013) Francalacci P1, Morelli L, Angius A, Berutti R, Reinier F, Atzeni R, Pilu R, Busonero F, Maschio A, Zara I, Sanna D, Useli A, Urru MF, Marcelli M, Cusano R, Oppo M, Zoledziewska M, Pitzalis M, Deidda F, Porcu E, Poddie F, Kang HM, Lyons R, Tarrier B, Gresham JB, Li B, Tofanelli S, Alonso S, Dei M, Lai S, Mulas A, Whalen MB, Uzzau S, Jones C, Schlessinger D, Abecasis GR, Sanna S, Sidore C, Cucca F. Science 341:565-569

Simultaneous purifying selection on the ancestral MC1R allele and positive selection on the melanoma-risk allele V60L in South Europeans (2013) C Martínez-Cadenas*, S López*, G Ribas3, C Flores, O García, A Sevilla, I Smith-Zubiaga, M Ibarrola-Villaba, M Pino-Yanes, J Gardeazabal, MD Boyano, A García de Galdeano, N Izagirre, C de la Rúa and S Alonso. Mol Biol Evol 30:2654-2665