Hileko artxiboak: June 2015

R-3.2.0

Maths @eu

Informazio Orokorra

R is ‘GNU S’, a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.

Instalatutako paketeak

lavaan, mnormt, psych, Rcmdr, abind, e1071, xlsx,biocLite(),FactoMineR

Besterenbat behar izanez gero, ezka iezaguzu.

Nola Erabili

R-3.2 exekutatzeko erabili:

/software/R-3.2.0/bin/R CMD BATCH input.R

Informazio Gehiago

http://cran.r-project.org/

USEARCH

Genetika, Kalkulu Softwarea

Informazio orokorra

USEARCH is a unique sequence analysis tool that offers search and clustering algorithms that are often orders of magnitude faster than BLAST. Tenemos la versión de 32 bits que es gratuita, pero no distribuible a terceros. Tiene la limitación de 4 GB de RAM como máximo.

Cómo usar

USEARCH erabiltzeko erabili ondorengo komandoa

/software/bin/usearch

adibidez

usearch -cluster_otus data.fa -otus otus.fa -uparseout out.up -relabel OTU_ -sizein -sizeout

Momentuz USEARCH xeon20 etiketa duten nodoetan dago eskuragarri

QIIME

USEARCH [intlink id=”7758″ type=”post”]QIIME[/intlink]-pean erabili daiteke

Informazio gehiago

USEARCH home page.

[intlink id=”7686″ type=”post”]QIIME[/intlink].