Informática Aplicada a la Investigación Rotating Header Image

febrero, 2017:

R, RCommander and RStudio

General information

R 3.3.3 is a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.

RStudio an RCommander are a graphical front ends for R.

Installed packages

abind, ape, biomformat, cummeRbund, DCGL, DESeq2, DEXSeq, e1071, edgeR, FactoMineR, GEOquery, lavaan, metagenomeSeq, mnormt, optparse, psych, randomForest, Rcmdr, RColorBrewer, ReactomePA, RUVSeq, vegan, WGCNA, xlsx.

Please, ask if you need any more.

How to use it

To use R in the queue scripts execute:

/software/bin/R CMD BATCH  R-input-file.R

to execute RStudio you must connect to Txinparta or Katramila with X2Go and execute

rstudio

to execute RCommander you must connect to Txinparta or Katramila with X2Go and execute R. Then inside R load

library(Rcmdr)

More information

R web page.

rstudio web page.

R eta RStudio

Informazio Orokorra

R 3.3.3 is a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.

RStudio and RCommander are a graphical front ends for R.

Instalatutako paketeak

abind, ape, biomformat, cummeRbund, DCGL, DESeq2, DEXSeq, e1071, edgeR, FactoMineR, GEOquery, lavaan, metagenomeSeq, mnormt, optparse, psych, randomForest, Rcmdr, RColorBrewer, ReactomePA, RUVSeq, vegan, WGCNA, xlsx..

Besterenbat behar izanez gero, ezka iezaguzu.

Nola erabili

R exekutatzeko kola sistemaren scriptetan erabili:

/software/bin/R  CMD  BATCH R-input-file.R

eta RStudio erabiltzeko X2Go bitartez egin behar da lehioak ireki ahal izateko, Katramilara edo Txinpartara konektatuz eta exekutatuz:

rstudio

eta RCommander erabiltzeko X2Go bitartez egin behar da lehioak ireki ahal izateko, Katramilara edo Txinpartara konektatuz eta exekutatu R. Gero R-n kargatu:

library(Rcmdr)

Informazio Gehiago

R web orrialdea.

rstudio web orrialdeal.

R, RCommader y RStudio

Información general

R 3.3.3 is a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.

RStudio and RCommander are graphical front ends for R.

Paquetes Instalados

abind, ape, biomformat, cummeRbund, DCGL, DESeq2, DEXSeq, e1071, edgeR, FactoMineR, GEOquery, lavaan, metagenomeSeq, mnormt, optparse, psych, randomForest, Rcmdr, RColorBrewer, ReactomePA, RUVSeq, vegan, WGCNA, xlsx.

Si se requiere alguno más, por favor, haxlo saber a los técnicos.

Cómo usar

Para usar R en el sistema de colas ejecutar:

/software/bin/R  CMD  BATCH  R-input-file.R

Para ejecutar RStudio se ha de conectarse a Txinparta o Katramila con X2Go y ejecutar

rstudio

Para ejecutar RCommander se ha de conectarse a Txinparta o Katramila con X2Go y ejecutar R. Dentro de R cargar:

library(Rcmdr)

Más información

Página web de R.

Página web de RStudio.