Archivo mensual: mayo 2015

Cufflinks

Información general Cufflinks is a reference-guided assembler for RNA-Seq experiments. It simultaneously assembles transcripts from reads and estimates their relative abundances, without using a reference annotation. The software expects as input RNA-Seq read alignments in SAM format (http://samtools.sourceforge.net). Versión instalada … Sigue leyendo

Publicado en Genética, Software de Cálculo | Deja un comentario

TopHat

Información general TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Versión … Sigue leyendo

Publicado en Genética, Software, Software de Cálculo | Deja un comentario