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FR20_Peptidomimetic Chemistry_Gilles Guichard

Gilles Guichard

+33 6 08 90 42 80

g.guichard@iecb.u-bordeaux.fr

https://www.guichard-iecb.fr/

Group description

The peptidomimetic chemistry research group led by Gilles Guichard focuses on the biomimetic chemistry of peptides and proteins. We are interested in designing and elaborating systems with protein-like structure and functions and to investigate and develop their applications in various fields including as bioinspired catalysts, drug-delivery systems or tools for the manipulation of biological processes. In particular, the group actively developed various projects in the field of foldamer chemistry which have been consistently funded by Regional, national and European granting agencies. The group pioneered the development of aliphatic urea-based helical foldamers as peptide helix mimics and for H-bond donor catalysis. Although centered on chemical synthesis, the research projects in the Guichard group are based on multidisciplinary approaches involving spectroscopic studies, crystallographic analyses, combinatorial techniques, and binding studies.

Gilles Guichard (53 y.o., 172 publications + 6 book chapters, H index 42 (scopus)) is currently a CNRS Research Director (DR1) and group leader at CBMN and IECB. He has been serving as scientific deputy director of CBMN Institute since 2017. The Guichard research group is composed of 13 people (excluding Master students) including 4 permanent researchers and one technician in crystallography, 5 post-doctoral fellows and 4 PhD students. Guichard is a strong advocate for equal opportunity recruitment (>40 % of current coworkers in the group are women).

The group led by G. Guichard is located on the Univ. Bordeaux campus in Pessac and is affiliated to  the Institut de Chimie et Biologie des Membranes et Nanoobjets (CBMN) and to the  Institut Européen de Chimie et Biologie (IECB). The CBMN and IECB institutes are dynamic and interdisciplinary research centers located on the campus of the University of Bordeaux (France). The laboratory is fully equipped for chemical synthesis and the institute has analytical and biophysical facilities combining state-of-the-art instrumentation (NMR, mass spectrometry and X-ray diffraction).

Keywords

  • Organocatalysis
  • Biomimetic chemistry
  • H-bond donor catalysis
  • Foldamers
  • Helices
  • Ureas
  • Green chemistry
  • Brønsted base
  • Asymmetric synthesis

Team Description

  • Gilles GUICHARD PI 0000-0002-2584-7502 (Principle Investigator)

    ORCID: 0000-0002-2584-7502

  • Morgane PASCO (Co-Principle Investigator)

    ORCID: 0000-0002-1556-2802

  • Christel DOLAIN RE (Research staff)

    ORCID: -

  • Claire SARAGAGLIA (Research staff)

    ORCID: -

  • Naveen GUPTA (Post-doctoral researcher)

    ORCID: 0000-0003-0406-3378

Projects

  • MPPs Foldamer-based nanostructures

    Pl: G. Guichard

    Funding Agency*: European Commission

    Ongoing: yes

    Project reference: -

  • Thera-HCi (protein mimicry)

    Pl: G. Guichard

    Funding Agency*: National

    Ongoing: yes

    Project reference: -

  • Foldamer inhibitors of protein-protein interactions

    Pl: G. Guichard

    Funding Agency*: Regional

    Ongoing: yes

    Project reference: -

  • HCO_for_LLAC (catalysis)

    Pl: G. Guichard

    Funding Agency*: National

    Ongoing: yes

    Project reference: -

  • International Doctorate program (catalysis)

    Pl: G. Guichard

    Funding Agency*: Regional

    Ongoing: yes

    Project reference: -

* INT - International EU - European NAT - National RE - Regional

Publications

  • Yoo, S. H., Buratto, J., Roy, A., Morvan, E., Pasco, M., Pulka-Ziach, K., Lombardo, C. M., Rosu, F., Gabelica, V., Mackereth, C. D., Collie, G. W., & Guichard, G, = Adaptive Binding of Alkyl Glycosides by Nonpeptidic Helix Bundles in Water: Toward Artificial Glycolipid Binding Proteins, J. Am. Chem. Soc., 2022
    http://dx.doi.org/10.1021/jacs.2c05234

  • Delamare, A., Naulet, G., Kauffmann, B., Guichard, G., & Compain, G., = Hexafluoroisobutylation of enolates through a tandem elimination/allylic shift/hydrofluorination reaction, Chem. Sci., 2022
    http://dx.doi.org/10.1039/D2SC02871A

  • Toledo-González, Y., Sotiropoulos, J.-M., Bécart, D., Guichard, G., & Carbonnière, P., = Insight into Substrate Recognition by Urea-Based Helical Foldamer Catalysts Using a DFT Global Optimization Approach, J. Org. Chem., 2022
    http://dx.doi.org/10.1021/acs.joc.2c00562

  • Bécart, D., Diemer, V., Salaün, A., Oiarbide, M., Nelli, Y. R., Kauffmann, B., Fischer, L., Palomo, C., & Guichard, G., = Helical Oligourea Foldamers as Powerful Hydrogen Bonding Catalysts for Enantioselective C-C Bond-Forming Reactions, J. Am. Chem. Soc., 2017
    http://dx.doi.org/10.1021/jacs.7b05802

  • Collie, G. W., Pulka-Ziach, K., Lombardo, C. M., Fremaux, J., Rosu, F., Decossas, M., Mauran, L., Lambert, O., Gabelica, V., Mackereth, C. D., & Guichard, G., = Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation, Nat. Chem., 2015
    http://dx.doi.org/10.1038/nchem.2353

Research Lines

ADVANCED MATERIALS AND PROCESSES

Rationalize the assembly process of Foldamer-based nanostructures as Enzyme mimics

Many of the promising applications of (bio)nanotechnology rely on extending synthetic organic chemistry into the nanometer length-scale with the expectation that accurate control of the chemical structure and functionalities in the 2D and 3D space may lead to materials with distinctive properties and function. Sequence-specific molecules, exhibiting a water soluble potential (e.g. biopolymers) have advantages as design elements for construction of these types of nanoscale materials in that correlations can be drawn between primary structure (the sequence), secondary structure (folded elements) and further assembly into higher order structure, potentially affording ordered architectures with emergent functions tailored to various applications (e.g. encapsulation and release, sensing, storage, catalysis). Fully synthetic, scalable systems that would manifest a high degree of hierarchical structure formation and functional capability in aqueous environment, have a far-reaching development and application potential. Yet, architectures made of non-natural self-assembling sequence-specific components have proven challenging to prepare and even more difficult to characterize at an atomic resolution, and further advancement are highly needed. This research line will take a leap towards the fabrication of a whole new range of fully synthetic protein-inspired water soluble self-assembled folded systems with shapes unseen among natural biopolymers and tailored properties such as catalytic (e.g. hydrolytic) activities.

Construction and characterization of Precise pore-forming Assemblies of bioinspired foldamers in membranes

The aim of this research line is to explore the potential use of synthetic, bioinspired helically folded oligomers (i.e. foldamers) to construct homogeneous nanometer-sized channel architectures, characterize their structures, investigate their interaction with membranes and explore molecular recognition within and transport properties through these systems. This research which is inspired by cellular membrane proteins forming pores across the membranes, capitalizes on some recent achievements of the Guichard group published in Nature Chemistry in 2015 showing that short amphiphilic helical foldamers that bear proteinogenic side chains in well-defined sequences can self-assemble into unique nanostructures such as water-filled channels of various diameters.

SUSTAINABLE MANUFACTURING

Bioinspired Foldamer-based Asymmetric Catalysis at low catalyst loading

Organocatalysis is a rapidly expanding methodology enabling challenging chemical transformations to be performed in the broad context of sustainable chemistry (metal-free procedures, catalyst recycling…). Potential applications include the rapid elaboration of advanced and useful building blocks for pharmaceutical development. Despite major achievements, organocatalysts generally suffer from low rate acceleration and turnover and the need for relatively high amounts to achieve good conversion and selectivity. The ability to synthesize artificial sequence-based oligomers that fold with high fidelity (foldamers) raises new prospects for mimicking biopolymers and for creating molecules with emergent functions including catalysis. We previously discovered that a catalytic system consisting of a chiral urea oligomer (H-bond donor) and a simple Brønsted base was able to promote the Michael reaction between enolizable carbonyl compounds and nitroolefins with excellent enantioselectivities, even at very low (up to 1/10000) chiral catalyst/substrate molar ratio. The main goal of this research line is to expand the scope and utility of this original catalytic system utilizing the chiral micro-environment of oligourea helices to catalyze more challenging asymmetric transformations while maintaining low catalyst loading. Particular attention will be paid to mechanistic factors that govern catalysis to better optimize the performance of the catalyst as well as its reusability.

Cross-border Collaboration (if any)

Several years ago, the Guichard group started a collaboration with the Asymmetric Catalysis and Chemical Synthesis research group (Department of Organic Chemistry I ) directed by Prof. Claudio Palomo  at the University of the Basque Country (UPV/EHU, San Sebastian, Spain) aimed at exploring the potential of oligourea foldamers in chemical catalysis. As unique, highly ordered helical structures with strong hydrogen-bond network capabilities that may mimic small peptides, oligoureas constitute novel entities whose catalytic properties remain unexplored. Both understanding how they can work in activating organic substrates and reagents, and how to fully exploit their capabilities in asymmetric (organo)catalysis and for the preparation of useful advanced intermediates for the production of fine chemicals and drugs are our objectives. Up to now our joint efforts, which are financially supported by : (i) a collaborative ANR proposal (HCO_for_LLAC ANR-18-CE07-0018, along with D. Taton at Univ. Bordeaux and P. Carbonnière at Univ. Pau et des pays de l'Adour - UPPA)  have led to five papers published including a landmark paper : Bécart et al, J. Am. Chem. Soc. 2017, 139, 12524 (selected for a spotlight by the editors) with one more in preparation reporting with a detailed sequence-activity relationship study of foldamer-based organocatalysts designed in our group, and (ii) two co-tutelle PhD Theses (D. Bécart 2018, A. Hacihasanoglu 2022).